Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 3.3e-259 897.9 466 100.0
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 8.2e-234 813.5 472 91.3
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 8.8e-220 766.9 470 87.2
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 3.7e-178 628.6 471 74.1
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 1.4e-113 414.1 454 55.3
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 6.7e-111 405.2 365 62.7
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 2.6e-110 403.3 449 53.7
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 3.3e-110 402.9 460 53.3
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 9.7e-110 401.4 412 55.8
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 1.4e-108 397.5 453 53.4
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 9.1e-108 394.8 478 52.9
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 1.6e-107 394.0 478 52.5
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 2.6e-107 393.3 457 51.6
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 2.6e-107 393.3 452 50.9
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 4.5e-107 392.5 457 51.4
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 7.7e-107 391.7 440 53.0
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 2.2e-106 390.2 480 50.6
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 6.5e-106 388.7 458 52.0
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 1.9e-105 387.1 480 52.9
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 4.7e-104 382.5 452 52.7
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 2.0e-102 377.1 457 50.5
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 3.7e-101 372.9 421 52.7
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 2.0e-99 367.1 351 59.3
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 2.0e-99 367.1 458 48.7
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 3.5e-99 366.3 453 51.2
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 6.5e-98 362.1 354 58.8
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 1.1e-97 361.3 415 53.5
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 1.5e-97 360.9 457 50.5
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 1.5e-97 360.9 458 50.0
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 4.2e-97 359.4 427 50.6
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 7.2e-97 358.6 475 46.9
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 9.4e-97 358.2 403 54.1
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 3.6e-96 356.3 421 51.3
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 3.4e-94 349.7 440 49.5
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 1.3e-93 347.8 472 46.8
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 4.8e-93 345.9 435 51.0
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 1.4e-92 344.4 462 49.4
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 2.4e-92 343.6 440 48.6
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 5.4e-92 342.4 414 51.4
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 7.0e-92 342.0 324 60.5
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 7.0e-92 342.0 407 51.4
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 9.1e-92 341.7 391 52.4
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 9.1e-92 341.7 403 52.6
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 1.6e-91 340.9 441 48.3
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 1.6e-91 340.9 431 48.7
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 1.3e-90 337.8 467 48.2
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 1.7e-90 337.4 427 47.8
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 3.8e-90 336.3 473 47.4
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 1.1e-89 334.7 418 49.0
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 1.1e-89 334.7 424 48.6
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 5.5e-89 332.4 435 49.0
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 5.5e-89 332.4 421 48.5
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 5.5e-89 332.4 419 48.7
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 7.2e-89 332.0 447 50.3
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 3.6e-88 329.7 424 48.6
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 3.6e-88 329.7 372 52.2
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 3.0e-87 326.6 436 48.4
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 5.7e-86 322.4 452 45.1
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 8.3e-85 318.5 414 47.6
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 1.8e-84 317.4 441 46.5
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 5.4e-84 315.8 461 44.7
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 5.4e-84 315.8 420 49.0
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 9.2e-84 315.1 511 42.3
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 1.6e-83 314.3 454 45.8
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 3.5e-83 313.2 420 47.9
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 5.9e-83 312.4 437 45.5
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 1.0e-82 311.6 383 48.0
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 1.7e-82 310.8 422 47.6
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 1.7e-82 310.8 422 47.6
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 5.0e-82 309.3 429 45.9
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 1.1e-81 308.1 438 46.3
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 3.3e-81 306.6 472 43.4
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 1.4e-79 301.2 406 48.0
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 1.4e-79 301.2 418 47.4
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 1.8e-79 300.8 434 44.7
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 1.2e-78 298.1 402 46.3
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 3.4e-78 296.6 166 91.0
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 4.4e-78 296.2 398 44.7
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 4.4e-78 296.2 438 44.7
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 2.2e-77 293.9 292 56.5
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 3.7e-77 293.1 421 43.9
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.8e-76 290.8 419 45.3
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 1.3e-74 284.6 450 41.8
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 6.2e-72 275.8 475 41.3
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 8.0e-72 275.4 415 44.1
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 1.4e-71 274.6 362 47.5
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 5.2e-71 272.7 410 43.9
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 8.9e-71 271.9 397 44.8
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 4.4e-70 269.6 419 43.2
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 2.9e-69 266.9 472 41.3
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 2.7e-67 260.4 437 41.6
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 3.5e-67 260.0 424 42.2
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 6.0e-67 259.2 367 45.0
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 2.3e-66 257.3 384 44.5
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 3.0e-66 256.9 434 42.4
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 3.0e-66 256.9 464 39.4
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 3.9e-66 256.5 440 41.1
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 5.0e-66 256.1 406 42.1
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 3.3e-65 253.4 245 57.6
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 4.7e-64 249.6 255 52.2
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 8.1e-64 248.8 463 38.2
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 1.8e-63 247.7 302 51.7
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 6.4e-61 239.2 397 42.6
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 4.6e-59 233.0 426 39.0
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 7.8e-59 232.3 353 44.8
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 1.3e-58 231.5 203 62.6
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 1.5e-57 228.0 332 44.0
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 2.5e-57 227.3 222 58.1
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.1e-56 224.2 384 41.1
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 4.0e-55 219.9 240 57.1
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 1.5e-54 218.0 397 39.5
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 3.7e-53 213.4 324 43.8
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 3.9e-50 203.4 430 37.2
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 3.9e-50 203.4 430 37.2
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 6.6e-50 202.6 368 40.5
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 4.7e-48 196.4 333 43.5
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 6.2e-48 196.1 379 38.5
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 3.4e-46 190.3 174 61.5
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 1.4e-44 184.9 291 44.7
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 7.1e-44 182.6 298 42.6
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 9.3e-44 182.2 316 38.6
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 7.8e-43 179.1 251 45.0
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.1e-41 175.3 262 40.5
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 5.8e-38 162.9 374 39.8
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 3.3e-33 147.1 249 41.4
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 7.4e-33 146.0 476 29.6
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 2.0e-30 137.9 134 56.0
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 1.7e-29 134.8 236 45.3
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 7.1e-28 129.4 151 47.0
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.2e-22 112.1 222 34.7
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 1.1e-20 105.5 174 46.0
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 4.2e-20 103.6 193 43.0
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 4.6e-19 100.1 84 65.5
MELO3C032928.2 Cucumis melo HOM05D006039 ORTHO05D006797 1.7e-13 81.6 81 56.8
MELO3C034566.2 Cucumis melo HOM05D006039 ORTHO05D006797 8.5e-13 79.3 60 63.3
Pp3c6_9630 Physcomitrium patens HOM05D026113 ORTHO05D006797 7.2e-12 76.3 92 45.7
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 7.2e-12 76.3 122 36.1
Pp3c16_7650 Physcomitrium patens HOM05D026113 ORTHO05D006797 1.6e-11 75.1 109 42.2
Pp3c20_22990 Physcomitrium patens HOM05D022188 ORTHO05D006797 5.1e-10 70.1 109 39.4
Mapoly0060s0031 Marchantia polymorpha HOM05D022188 ORTHO05D006797 3.7e-08 63.9 111 31.5
Pp3c10_11042 Physcomitrium patens HOM05D026113 ORTHO05D006797 6.3e-08 63.2 93 39.8
Pp3c23_10180 Physcomitrium patens HOM05D022188 ORTHO05D006797 2.4e-07 61.2 92 38.0


User provided reference genes

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