Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 7.2e-137 490.7 276 100.0
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 7.7e-131 470.7 276 94.2
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 1.1e-121 440.3 277 89.2
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 2.5e-121 439.1 277 90.3
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 3.3e-121 438.7 275 88.7
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 3.3e-121 438.7 277 88.4
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 5.5e-121 438.0 280 88.9
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 9.5e-121 437.2 277 89.5
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 9.5e-121 437.2 275 88.7
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 9.5e-121 437.2 277 89.5
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.6e-120 436.4 277 89.9
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 2.1e-120 436.0 276 88.4
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 2.1e-120 436.0 277 88.8
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 3.6e-120 435.3 277 89.9
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 4.7e-120 434.9 277 88.8
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 4.7e-120 434.9 277 88.8
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 6.1e-120 434.5 277 88.8
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 6.1e-120 434.5 277 87.7
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 8.0e-120 434.1 274 88.0
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 8.0e-120 434.1 277 89.5
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 8.0e-120 434.1 277 88.1
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 1.8e-119 433.0 277 88.1
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 2.3e-119 432.6 277 88.4
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 2.3e-119 432.6 277 87.7
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 3.0e-119 432.2 274 87.6
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 4.0e-119 431.8 277 87.7
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 4.0e-119 431.8 277 87.7
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 5.2e-119 431.4 277 87.0
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 6.8e-119 431.0 277 87.7
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 6.8e-119 431.0 277 88.1
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 6.8e-119 431.0 277 87.4
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 8.9e-119 430.6 277 86.6
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 8.9e-119 430.6 275 87.3
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 8.9e-119 430.6 275 87.3
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 8.9e-119 430.6 277 87.7
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 8.9e-119 430.6 277 87.7
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 1.2e-118 430.3 277 87.7
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 2.6e-118 429.1 277 87.4
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 2.6e-118 429.1 274 87.6
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.6e-118 429.1 277 87.4
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 2.6e-118 429.1 277 87.0
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 3.4e-118 428.7 277 87.4
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 5.7e-118 427.9 277 86.3
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 9.8e-118 427.2 277 86.6
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 9.8e-118 427.2 277 86.6
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 9.8e-118 427.2 276 86.2
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.3e-117 426.8 277 87.0
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 1.7e-117 426.4 277 85.9
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 1.7e-117 426.4 277 87.0
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 2.2e-117 426.0 277 87.0
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 2.2e-117 426.0 277 87.0
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 2.8e-117 425.6 277 85.6
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 3.7e-117 425.2 275 88.0
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 4.9e-117 424.9 277 86.3
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 4.9e-117 424.9 277 86.3
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 8.3e-117 424.1 276 87.3
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 8.3e-117 424.1 277 85.9
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 1.1e-116 423.7 277 85.9
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 2.4e-116 422.5 278 85.6
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 2.4e-116 422.5 276 87.0
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 3.1e-116 422.2 277 86.6
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 4.1e-116 421.8 277 85.2
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 5.4e-116 421.4 277 84.8
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 7.0e-116 421.0 273 86.8
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 7.0e-116 421.0 277 85.6
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 9.2e-116 420.6 276 85.9
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 2.7e-115 419.1 277 85.6
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 3.5e-115 418.7 279 86.0
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 2.3e-114 416.0 276 84.1
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 5.0e-114 414.8 277 84.8
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 1.1e-113 413.7 283 83.0
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.5e-113 413.3 277 84.1
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 4.3e-113 411.8 301 79.7
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 5.6e-113 411.4 261 89.3
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 1.6e-112 409.8 229 98.3
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 2.3e-111 406.0 321 75.1
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 2.0e-110 402.9 277 83.0
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 3.4e-110 402.1 261 86.6
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 3.4e-110 402.1 261 86.6
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 4.4e-110 401.7 276 83.7
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 7.5e-110 401.0 277 79.4
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 7.5e-110 401.0 278 81.3
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.2e-109 399.4 320 74.1
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 4.9e-109 398.3 275 82.9
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 6.4e-109 397.9 274 84.7
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 2.4e-108 396.0 270 85.2
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 1.2e-107 393.7 263 85.2
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 2.7e-107 392.5 275 81.1
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 3.5e-107 392.1 299 73.6
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 4.6e-107 391.7 274 77.0
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 3.9e-106 388.7 272 80.5
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 6.6e-106 387.9 278 79.1
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 1.1e-105 387.1 318 68.6
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 1.5e-105 386.7 318 71.4
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 2.5e-105 386.0 278 78.8
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 1.2e-104 383.6 271 79.0
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 1.1e-103 380.6 256 83.2
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 1.8e-103 379.8 276 78.6
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 3.1e-103 379.0 278 78.1
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 6.8e-103 377.9 269 77.3
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.5e-102 376.7 355 62.5
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 3.7e-101 372.1 260 81.9
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 2.4e-100 369.4 256 82.8
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 9.2e-100 367.5 262 79.4
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 6.6e-98 361.3 274 75.9
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 2.5e-97 359.4 331 68.6
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 1.4e-95 353.6 230 85.7
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 2.4e-92 342.8 222 89.2
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 4.1e-92 342.0 266 71.4
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 3.0e-90 335.9 222 87.8
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 3.9e-90 335.5 249 77.9
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 3.9e-90 335.5 249 77.9
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 1.9e-89 333.2 276 64.1
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 3.1e-87 325.9 278 67.6
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 1.2e-86 323.9 281 67.6
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 7.6e-86 321.2 224 83.9
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 4.9e-85 318.5 273 65.6
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 1.2e-83 313.9 283 65.7
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 8.7e-82 307.8 314 63.4
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 4.7e-80 302.0 274 66.4
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 5.2e-79 298.5 274 66.1
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 3.4e-70 269.2 258 60.1
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 1.1e-68 264.2 186 80.6
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 2.8e-64 249.6 274 52.6
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 6.9e-63 245.0 278 55.0
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 1.6e-59 233.8 153 79.1
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 8.7e-58 228.0 180 76.7
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 6.2e-56 221.9 138 84.8
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 3.4e-54 216.1 145 86.2
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 9.3e-52 208.0 132 81.8
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 7.9e-51 204.9 129 84.5
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 3.1e-47 193.0 300 45.0
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 2.5e-41 173.3 97 90.7
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 4.3e-41 172.6 106 83.0
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 3.1e-39 166.4 90 93.3
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 3.6e-35 152.9 84 92.9
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 1.8e-34 150.6 155 61.3
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 1.4e-28 131.0 80 82.5
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.9e-28 130.6 74 89.2
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.9e-28 130.6 74 89.2
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 1.6e-27 127.5 80 78.8
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 1.5e-20 104.4 158 46.2
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 4.2e-20 102.8 258 36.0
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 1.2e-19 101.3 158 43.7
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 1.4e-18 97.8 176 38.1
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 2.3e-18 97.1 123 52.0
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.3e-18 97.1 71 87.3
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 1.5e-17 94.4 150 38.7
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 7.5e-17 92.0 71 80.3
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 7.5e-17 92.0 57 77.2
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 1.7e-16 90.9 158 39.2
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 2.2e-16 90.5 157 42.0
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 1.6e-14 84.3 89 61.8
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.0e-13 81.6 179 32.4
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 3.8e-13 79.7 70 65.7
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.2e-12 76.6 46 82.6
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 4.2e-12 76.3 157 38.9
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 9.4e-12 75.1 157 38.9
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 6.1e-11 72.4 163 35.6
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 6.8e-10 68.9 43 76.7
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 4.4e-09 66.2 242 32.6
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 8.3e-08 62.0 140 40.7


User provided reference genes

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