Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 3.4e-69 265.0 145 100.0
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 5.1e-41 171.4 107 88.8
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 3.7e-31 138.7 111 75.7
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 3.5e-26 122.1 109 70.6
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 5.1e-25 118.2 107 63.6
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 6.7e-25 117.9 107 63.6
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 2.4e-22 109.4 110 61.8
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 2.4e-22 109.4 109 65.1
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 3.1e-22 109.0 109 63.3
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 1.5e-21 106.7 110 61.8
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 3.4e-21 105.5 111 62.2
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 2.2e-20 102.8 110 60.0
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 8.4e-20 100.9 107 57.9
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 8.4e-20 100.9 107 57.9
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 8.4e-20 100.9 107 57.9
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 1.9e-19 99.8 111 60.4
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 3.2e-19 99.0 109 59.6
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 4.2e-19 98.6 105 57.1
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 7.1e-19 97.8 115 56.5
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 2.1e-18 96.3 120 50.0
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 4.6e-18 95.1 111 53.2
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 4.6e-18 95.1 111 53.2
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 6.0e-18 94.7 110 56.4
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 7.9e-18 94.4 112 54.5
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 1.0e-17 94.0 106 52.8
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 1.0e-17 94.0 112 58.9
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 1.0e-17 94.0 107 59.8
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 3.0e-17 92.4 107 52.3
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 3.9e-17 92.0 110 51.8
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 5.1e-17 91.7 113 57.5
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 5.1e-17 91.7 111 56.8
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 6.7e-17 91.3 109 57.8
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 8.7e-17 90.9 109 56.0
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 2.5e-16 89.4 113 54.9
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 2.5e-16 89.4 107 54.2
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 9.7e-16 87.4 109 54.1
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 1.3e-15 87.0 112 54.5
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 1.3e-15 87.0 107 52.3
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 1.6e-15 86.7 111 52.3
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 2.2e-15 86.3 113 54.0
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 2.8e-15 85.9 114 50.9
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 2.8e-15 85.9 113 55.8
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 3.7e-15 85.5 111 55.9
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 3.7e-15 85.5 111 56.8
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 3.7e-15 85.5 110 50.0
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 4.8e-15 85.1 108 55.6
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 4.8e-15 85.1 111 52.3
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 4.8e-15 85.1 108 52.8
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 4.8e-15 85.1 108 48.1
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 6.3e-15 84.7 109 51.4
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 8.2e-15 84.3 107 56.1
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 8.2e-15 84.3 109 49.5
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 1.1e-14 84.0 110 52.7
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 1.1e-14 84.0 107 55.1
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 1.1e-14 84.0 106 50.9
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 1.4e-14 83.6 108 51.9
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 1.4e-14 83.6 110 53.6
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 1.4e-14 83.6 107 54.2
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 1.4e-14 83.6 107 54.2
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 1.4e-14 83.6 107 54.2
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 1.4e-14 83.6 107 54.2
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 1.8e-14 83.2 107 50.5
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 2.4e-14 82.8 111 53.2
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 2.4e-14 82.8 109 51.4
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 3.1e-14 82.4 107 50.5
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 3.1e-14 82.4 107 50.5
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 5.3e-14 81.6 107 54.2
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 5.3e-14 81.6 112 50.9
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 5.3e-14 81.6 108 50.0
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 5.3e-14 81.6 110 50.0
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 6.9e-14 81.3 107 47.7
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 9.0e-14 80.9 109 49.5
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 9.0e-14 80.9 111 51.4
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 1.2e-13 80.5 107 53.3
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 1.2e-13 80.5 108 50.9
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 1.5e-13 80.1 107 54.2
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 1.5e-13 80.1 112 50.0
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 1.5e-13 80.1 112 50.0
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 1.5e-13 80.1 112 50.0
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 2.6e-13 79.3 109 48.6
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 2.6e-13 79.3 110 50.0
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 3.4e-13 79.0 111 48.6
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 3.4e-13 79.0 114 46.5
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 3.4e-13 79.0 111 49.5
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 3.4e-13 79.0 109 48.6
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 4.5e-13 78.6 109 45.0
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 4.5e-13 78.6 109 51.4
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 4.5e-13 78.6 110 48.2
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 7.7e-13 77.8 109 48.6
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.0e-12 77.4 108 49.1
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 1.0e-12 77.4 111 48.6
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 1.3e-12 77.0 107 43.0
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 1.3e-12 77.0 113 48.7
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.3e-12 77.0 108 49.1
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 1.3e-12 77.0 108 49.1
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 1.3e-12 77.0 109 51.4
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 1.7e-12 76.6 114 50.0
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 1.1e-11 73.9 107 42.1
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.1e-11 73.9 99 51.5
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 2.5e-11 72.8 112 46.4
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 2.5e-11 72.8 141 43.3
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 2.5e-11 72.8 111 45.9
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 2.5e-11 72.8 105 43.8
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 3.2e-11 72.4 111 48.6
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 3.2e-11 72.4 105 49.5
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 4.2e-11 72.0 108 45.4
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 7.2e-11 71.2 109 47.7
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 7.2e-11 71.2 109 45.0
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 9.4e-11 70.9 111 46.8
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 1.2e-10 70.5 112 44.6
Eucgr.B03692 Eucalyptus grandis HOM05D004268 ORTHO05D004958 1.6e-10 70.1 113 47.8
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 1.6e-10 70.1 112 46.4
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 2.1e-10 69.7 107 47.7
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 2.1e-10 69.7 105 46.7
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 2.1e-10 69.7 113 44.2
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 2.1e-10 69.7 113 46.0
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 2.7e-10 69.3 116 45.7
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 2.7e-10 69.3 112 44.6
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 3.6e-10 68.9 114 44.7
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 3.6e-10 68.9 114 44.7
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 7.9e-10 67.8 108 44.4
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 1.0e-09 67.4 109 44.0
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.4e-09 67.0 112 47.3
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 3.9e-09 65.5 126 38.1
BraA01t03491Z Brassica rapa HOM05D004268 ORTHO05D004958 5.1e-09 65.1 107 44.9
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 5.1e-09 65.1 95 44.2
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 5.1e-09 65.1 111 44.1
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 6.7e-09 64.7 103 44.7
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 8.8e-09 64.3 109 42.2
BolC1t04268H Brassica oleracea HOM05D004268 ORTHO05D004958 1.5e-08 63.5 107 44.9
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 1.5e-08 63.5 38 81.6
Nn7g36237 Nelumbo nucifera HOM05D004268 ORTHO05D004958 2.0e-08 63.2 113 42.5
Nn7g36238 Nelumbo nucifera HOM05D004268 ORTHO05D004958 2.0e-08 63.2 113 42.5
A01p33800 Brassica napus HOM05D004268 ORTHO05D004958 2.5e-08 62.8 107 43.9
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 3.3e-08 62.4 108 38.9
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 5.7e-08 61.6 109 43.1
Aqoxy1G00277 Aquilegia oxysepala HOM05D004268 ORTHO05D004958 2.8e-07 59.3 40 75.0
Lalb_Chr01g0000351 Lupinus albus HOM05D004268 ORTHO05D004958 3.7e-07 58.9 111 38.7
Sp3g19010 Schrenkiella parvula HOM05D004268 ORTHO05D004958 3.7e-07 58.9 106 41.5
Oeu033136.1 Olea europaea HOM05D004268 ORTHO05D004958 4.8e-07 58.5 40 75.0
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 1.1e-06 57.4 95 41.1
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 1.8e-06 56.6 115 40.0
BcaB04g20616 Brassica carinata HOM05D004268 ORTHO05D004958 5.3e-06 55.1 106 39.6
Sopen01g004050 Solanum pennellii HOM05D004268 ORTHO05D004958 9.1e-06 54.3 120 38.3


User provided reference genes

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