Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 7.5e-239 830.1 415 100.0
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 1.3e-217 759.6 416 90.6
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 4.2e-205 718.0 455 82.6
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 5.0e-190 667.9 424 77.6
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 3.2e-189 665.2 416 78.8
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 3.2e-189 665.2 426 77.9
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 9.3e-189 663.7 400 80.8
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 1.6e-188 662.9 400 80.8
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 2.5e-186 655.6 428 76.4
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 7.4e-186 654.1 431 74.5
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 1.3e-185 653.3 433 76.7
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 4.8e-185 651.4 427 75.4
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 6.3e-185 651.0 428 75.5
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 1.1e-184 650.2 415 76.4
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 1.1e-184 650.2 429 75.1
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 1.4e-184 649.8 429 75.1
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 4.1e-184 648.3 424 74.1
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 5.3e-184 647.9 401 78.6
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 1.2e-183 646.7 428 74.5
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 1.2e-183 646.7 425 76.0
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 4.5e-183 644.8 427 74.5
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 1.0e-182 643.7 404 78.2
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 6.5e-182 641.0 393 80.4
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 1.2e-180 636.7 416 76.9
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 4.6e-180 634.8 400 77.2
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 6.1e-180 634.4 426 74.9
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 7.9e-180 634.0 399 77.2
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 1.0e-179 633.6 401 77.3
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 1.4e-179 633.3 408 75.7
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 3.9e-179 631.7 400 75.8
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 6.7e-179 630.9 398 77.4
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 1.5e-178 629.8 411 76.6
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 2.0e-178 629.4 412 75.0
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 7.4e-178 627.5 398 75.6
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 9.7e-178 627.1 411 74.0
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 2.2e-177 625.9 398 75.4
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 3.7e-177 625.2 400 75.5
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 3.7e-177 625.2 400 76.8
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 1.1e-176 623.6 392 76.8
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 3.1e-176 622.1 414 74.2
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 3.1e-176 622.1 437 72.3
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 2.6e-175 619.0 420 72.9
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 3.4e-175 618.6 414 73.7
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 3.4e-175 618.6 414 73.7
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 3.4e-175 618.6 398 75.9
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 5.9e-175 617.8 463 67.4
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 5.9e-175 617.8 433 71.4
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 7.7e-175 617.5 420 73.1
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 7.7e-175 617.5 432 71.3
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 6.5e-174 614.4 398 74.1
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 6.5e-174 614.4 392 75.8
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 8.5e-174 614.0 398 73.6
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 2.5e-173 612.5 398 72.9
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 4.2e-173 611.7 445 71.0
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 5.5e-173 611.3 398 73.1
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 7.2e-173 610.9 414 72.5
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 7.2e-173 610.9 400 73.2
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 9.4e-173 610.5 398 73.1
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 1.2e-172 610.1 417 73.1
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 3.6e-172 608.6 442 69.7
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 1.0e-171 607.1 392 75.0
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 5.1e-171 604.7 417 72.7
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 8.8e-171 604.0 392 74.5
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 2.0e-170 602.8 393 74.0
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 3.7e-169 598.6 400 72.5
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 4.8e-169 598.2 400 72.2
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 4.8e-169 598.2 397 72.0
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 4.8e-169 598.2 398 73.6
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 8.2e-169 597.4 393 73.3
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 1.1e-168 597.0 409 74.3
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 1.1e-168 597.0 400 72.8
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 5.3e-168 594.7 374 79.1
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 3.5e-167 592.0 383 73.4
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 4.5e-167 591.7 400 71.0
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 2.9e-166 589.0 400 70.5
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 5.0e-166 588.2 392 71.9
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 2.5e-165 585.9 393 72.8
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 3.3e-162 575.5 400 70.0
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 4.4e-162 575.1 400 70.0
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 9.7e-162 573.9 354 79.4
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 1.3e-161 573.5 400 69.8
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 1.3e-161 573.5 400 69.8
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 2.7e-159 565.8 398 70.1
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 1.7e-158 563.1 387 69.3
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 3.2e-157 558.9 348 78.4
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 4.2e-157 558.5 402 69.4
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 7.2e-157 557.8 563 54.4
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 9.4e-157 557.4 348 78.2
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.0e-155 553.9 419 64.0
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 6.3e-153 544.7 406 66.5
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 1.4e-152 543.5 371 71.7
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 9.1e-152 540.8 290 94.5
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 3.0e-147 525.8 332 77.4
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 3.4e-146 522.3 398 66.3
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 4.9e-145 518.5 339 73.5
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 1.3e-142 510.4 373 70.8
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 1.1e-141 507.3 344 70.1
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 1.6e-140 503.4 409 62.6
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 4.0e-139 498.8 408 59.1
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 2.0e-138 496.5 393 60.1
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 3.2e-136 489.2 413 58.1
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 1.2e-135 487.3 378 61.6
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 2.7e-135 486.1 334 73.1
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 2.4e-128 463.0 418 60.5
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 6.2e-124 448.4 348 68.7
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 1.5e-122 443.7 334 65.6
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 1.7e-118 430.3 331 65.9
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 5.4e-112 408.7 369 52.8
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 4.7e-108 395.6 276 69.6
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 6.2e-108 395.2 308 66.6
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 2.0e-106 390.2 320 62.5
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 4.0e-99 365.9 396 47.7
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 9.3e-96 354.8 410 45.6
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 3.9e-94 349.4 319 55.5
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 5.6e-93 345.5 228 74.1
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 3.1e-83 313.2 399 43.1
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 1.4e-67 261.2 170 70.6
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 1.8e-67 260.8 129 98.4
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 1.1e-61 241.5 262 47.7
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 2.5e-56 223.8 242 52.5
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 9.7e-53 211.8 122 82.0
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 8.5e-49 198.7 166 61.4
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 1.9e-48 197.6 147 65.3
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-45 188.3 167 56.3
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 2.6e-45 187.2 336 32.1
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 8.3e-36 155.6 140 60.7
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 2.0e-29 134.4 415 28.9
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 4.4e-29 133.3 84 75.0
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 8.6e-25 119.0 116 55.2
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 2.3e-22 110.9 77 70.1
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 7.5e-21 105.9 105 57.1
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 1.7e-20 104.8 64 71.9
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 1.2e-15 88.6 69 63.8
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 1.6e-15 88.2 49 81.6
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 4.0e-14 83.6 72 56.9
unitig_62.g23890 Utricularia gibba HOM05D005532 ORTHO05D006873 1.0e-09 68.9 62 54.8
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 5.0e-09 66.6 76 43.4
RhsimUnG0131100 Rhododendron simsii HOM05D005532 ORTHO05D000282 7.3e-08 62.8 44 63.6
AUR62000670 Chenopodium quinoa HOM05D001135 ORTHO05D001005 2.3e-06 57.8 47 59.6


User provided reference genes

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