Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014563.2 Cucumis melo HOM05D007144 ORTHO05D008709 1.0e-31 140.6 158 100.0
CsaV3_6G039020 Cucumis sativus L. HOM05D007144 ORTHO05D008709 1.6e-27 126.7 156 93.6
Cpa.g.sc482.3 Carica papaya HOM05D007144 ORTHO05D008709 3.6e-16 89.0 68 70.6
Potri.001G276100 Populus trichocarpa HOM05D007144 ORTHO05D008709 5.2e-15 85.1 64 64.1
Sed0028076 Sechium edule HOM05D007144 ORTHO05D008709 5.2e-15 85.1 68 70.6
Potri.009G070700 Populus trichocarpa HOM05D007144 ORTHO05D008709 5.8e-14 81.6 68 60.3
CSS0000717 Camellia sinensis var. sinensis HOM05D007144 ORTHO05D008709 7.5e-14 81.3 68 61.8
COL.COLO4_35678 Corchorus olitorius HOM05D007144 ORTHO05D008709 2.2e-13 79.7 68 60.3
Sabra09G0053500 Salix brachista HOM05D007144 ORTHO05D008709 2.9e-13 79.3 63 61.9
Duzib150G1568 Durio zibethinus HOM05D007144 ORTHO05D008709 3.7e-13 79.0 68 58.8
TPR.G13466 Trifolium pratense HOM05D007144 ORTHO05D008709 3.7e-13 79.0 58 67.2
Gohir.A07G120000 Gossypium hirsutum HOM05D007144 ORTHO05D008709 4.9e-13 78.6 65 60.0
Gohir.D07G124200 Gossypium hirsutum HOM05D007144 ORTHO05D008709 1.1e-12 77.4 67 59.7
Gorai.001G134000 Gossypium raimondii HOM05D007144 ORTHO05D008709 1.1e-12 77.4 67 59.7
Zm00001eb329760 Zea mays HOM05D007144 ORTHO05D008709 1.1e-12 77.4 68 60.3
Actinidia06960 Actinidia chinensis HOM05D007144 ORTHO05D008709 1.4e-12 77.0 61 59.0
Thecc.09G249300 Theobroma cacao HOM05D007144 ORTHO05D008709 1.4e-12 77.0 68 60.3
Nitab4.5_0003882g0010 Nicotiana tabacum HOM05D007144 ORTHO05D008709 1.9e-12 76.6 59 66.1
Hma1.2p1_0842F.1_g227150 Hydrangea macrophylla HOM05D007144 ORTHO05D008709 3.2e-12 75.9 63 60.3
Manes.02G140201 Manihot esculenta HOM05D007144 ORTHO05D008709 3.2e-12 75.9 66 57.6
Prupe.4G267400 Prunus persica HOM05D007144 ORTHO05D008709 3.2e-12 75.9 66 60.6
Atru.chr3.2764 Acer truncatum HOM05D007144 ORTHO05D008709 4.1e-12 75.5 65 60.0
Solyc04g008580.3 Solanum lycopersicum HOM05D007144 ORTHO05D008709 4.1e-12 75.5 59 66.1
CAN.G880.2 Capsicum annuum HOM05D007144 ORTHO05D008709 5.4e-12 75.1 53 71.7
TAR369G0480 Trochodendron aralioides HOM05D007144 ORTHO05D008709 5.4e-12 75.1 59 62.7
Cc11_g02820 Coffea canephora HOM05D007144 ORTHO05D008709 7.1e-12 74.7 68 54.4
DCAR_023846 Daucus carota HOM05D007144 ORTHO05D008709 7.1e-12 74.7 57 66.7
Sp6g31320 Schrenkiella parvula HOM05D007144 ORTHO05D008709 7.1e-12 74.7 48 70.8
Sc06g0004670 Simmondsia chinensis HOM05D007144 ORTHO05D008709 7.1e-12 74.7 59 62.7
Cfa010657 Carpinus fangiana HOM05D007144 ORTHO05D008709 9.2e-12 74.3 65 63.1
Haze_23224 Corylus avellana HOM05D007144 ORTHO05D008709 9.2e-12 74.3 65 63.1
Nitab4.5_0000129g0400 Nicotiana tabacum HOM05D007144 ORTHO05D008709 9.2e-12 74.3 59 64.4
Peaxi162Scf00329g00929 Petunia axillaris HOM05D007144 ORTHO05D008709 9.2e-12 74.3 59 64.4
CARHR200790 Cardamine hirsuta HOM05D007144 ORTHO05D008709 1.2e-11 73.9 48 68.8
Sopen04g003740 Solanum pennellii HOM05D007144 ORTHO05D008709 1.2e-11 73.9 59 64.4
PGSC0003DMG400031376 Solanum tuberosum HOM05D007144 ORTHO05D008709 1.2e-11 73.9 59 64.4
AL6G23120 Arabidopsis lyrata HOM05D007144 ORTHO05D008709 1.6e-11 73.6 48 68.8
Thhalv10014957m.g Eutrema salsugineum HOM05D007144 ORTHO05D008709 1.6e-11 73.6 48 68.8
Haze_03594 Corylus avellana HOM05D007144 ORTHO05D008709 2.7e-11 72.8 65 61.5
Carub.0006s1083 Capsella rubella HOM05D007144 ORTHO05D008709 3.5e-11 72.4 48 70.8
Glyma.08G150200 Glycine max HOM05D007144 ORTHO05D008709 3.5e-11 72.4 55 63.6
HanXRQChr17g0535301 Helianthus annuus HOM05D007144 ORTHO05D008709 3.5e-11 72.4 68 55.9
Aqoxy1G00362 Aquilegia oxysepala HOM05D007144 ORTHO05D008709 4.6e-11 72.0 65 55.4
CiPaw.13G151300 Carya illinoinensis HOM05D007144 ORTHO05D008709 4.6e-11 72.0 68 58.8
Ciclev10017489m.g Citrus clementina HOM05D007144 ORTHO05D008709 6.0e-11 71.6 58 63.8
SGA_v2.0_scaffold43G16444 Striga asiatica HOM05D007144 ORTHO05D008709 6.0e-11 71.6 68 54.4
ATR0745G069 Amborella trichopoda HOM05D007144 ORTHO05D008709 1.0e-10 70.9 48 66.7
Lsat_1_v5_gn_2_34061 Lactuca sativa HOM05D007144 ORTHO05D008709 1.0e-10 70.9 65 56.9
THA.LOC104799122 Tarenaya hassleriana HOM05D007144 ORTHO05D008709 1.0e-10 70.9 53 62.3
Medtr3g088410 Medicago truncatula HOM05D007144 ORTHO05D008709 1.3e-10 70.5 58 60.3
RcHm_v2.0_Chr3g0485011 Rosa chinensis HOM05D007144 ORTHO05D008709 1.3e-10 70.5 48 68.8
A10p25500 Brassica napus HOM05D007144 ORTHO05D008709 1.7e-10 70.1 48 66.7
C09p64580 Brassica napus HOM05D007144 ORTHO05D008709 1.7e-10 70.1 48 66.7
BolC9t59291H Brassica oleracea HOM05D007144 ORTHO05D008709 1.7e-10 70.1 48 66.7
BraA10t44614Z Brassica rapa HOM05D007144 ORTHO05D008709 1.7e-10 70.1 48 66.7
ClCG02G022890 Citrullus lanatus HOM05D007144 ORTHO05D008709 1.7e-10 70.1 169 62.7
SalBow5G2895 Salvia bowleyana HOM05D007144 ORTHO05D008709 2.3e-10 69.7 68 51.5
Ca_03986_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 3.0e-10 69.3 51 64.7
Duzib168G0692 Durio zibethinus HOM05D007144 ORTHO05D008709 3.0e-10 69.3 68 57.4
SalBow5G2023 Salvia bowleyana HOM05D007144 ORTHO05D008709 3.0e-10 69.3 68 51.5
Aa31LG3G14910 Aethionema arabicum HOM05D007144 ORTHO05D008709 3.9e-10 68.9 47 66.0
Ah.06g194530 Amaranthus hybridus HOM05D007144 ORTHO05D008709 3.9e-10 68.9 68 58.8
EL10Ac4g10148 Beta vulgaris HOM05D007144 ORTHO05D008709 3.9e-10 68.9 48 72.9
FAN19G1536 Fragaria x ananassa HOM05D007144 ORTHO05D008709 3.9e-10 68.9 53 58.5
Lj6g0012120 Lotus japonicus HOM05D007144 ORTHO05D008709 3.9e-10 68.9 55 61.8
Manes.01G179700 Manihot esculenta HOM05D007144 ORTHO05D008709 3.9e-10 68.9 64 53.1
AT5G12320 Arabidopsis thaliana HOM05D007144 ORTHO05D008709 5.1e-10 68.6 48 62.5
Eucgr.B03730 Eucalyptus grandis HOM05D007144 ORTHO05D008709 5.1e-10 68.6 58 58.6
FvH4_1g25870 Fragaria vesca HOM05D007144 ORTHO05D008709 5.1e-10 68.6 61 55.7
FAN23G1846 Fragaria x ananassa HOM05D007144 ORTHO05D008709 5.1e-10 68.6 61 55.7
FAN26G3363 Fragaria x ananassa HOM05D007144 ORTHO05D008709 5.1e-10 68.6 61 55.7
AUR62006537 Chenopodium quinoa HOM05D007144 ORTHO05D008709 6.6e-10 68.2 51 64.7
MD11G1186200 Malus domestica HOM05D007144 ORTHO05D008709 8.6e-10 67.8 52 59.6
Hund07439 Selenicereus undatus HOM05D007144 ORTHO05D008709 1.1e-09 67.4 49 61.2
HPP92_013978 Vanilla planifolia HOM05D007144 ORTHO05D008709 1.1e-09 67.4 61 50.8
Migut.O00557 Erythranthe guttata HOM05D007144 ORTHO05D008709 1.5e-09 67.0 48 66.7
MBI13_g27793_MAGBIO Magnolia biondii HOM05D007144 ORTHO05D008709 1.5e-09 67.0 65 55.4
Rhsim13G0210700 Rhododendron simsii HOM05D007144 ORTHO05D008709 1.9e-09 66.6 59 55.9
Ca_12164_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 2.5e-09 66.2 67 56.7
Dinv36172 Davidia involucrata HOM05D007144 ORTHO05D008709 2.5e-09 66.2 77 51.9
arahy.Tifrunner.gnm1.ann1.FNNB0Q Arachis hypogaea HOM05D007144 ORTHO05D008709 4.3e-09 65.5 65 55.4
arahy.Tifrunner.gnm1.ann1.J3HRR4 Arachis hypogaea HOM05D007144 ORTHO05D008709 4.3e-09 65.5 65 55.4
arahy.Tifrunner.gnm1.ann1.A9WCXI Arachis hypogaea HOM05D007144 ORTHO05D008709 5.6e-09 65.1 67 52.2
TAR623G0360 Trochodendron aralioides HOM05D007144 ORTHO05D008709 5.6e-09 65.1 65 53.8
Psat1g051560 Pisum sativum HOM05D007144 ORTHO05D008709 1.2e-08 63.9 57 59.6
CDE04G3392 Ceratophyllum demersum HOM05D000144 ORTHO05D007336 2.1e-08 63.2 68 51.5
ECA236G5047 Erigeron canadensis HOM05D007144 ORTHO05D008709 2.1e-08 63.2 68 50.0
MD03G1167000 Malus domestica HOM05D007144 ORTHO05D008709 2.1e-08 63.2 66 51.5
unitig_749.g14354 Utricularia gibba HOM05D007144 ORTHO05D008709 2.8e-08 62.8 45 64.4
AUR62000186 Chenopodium quinoa HOM05D007144 ORTHO05D008709 4.7e-08 62.0 47 63.8
PGR102G1924 Punica granatum HOM05D007144 ORTHO05D008709 4.7e-08 62.0 58 56.9
Mapoly0026s0092 Marchantia polymorpha HOM05D007144 ORTHO05D008709 1.8e-07 60.1 50 52.0
GSVIVG01037268001 Vitis vinifera HOM05D007144 ORTHO05D008709 2.3e-07 59.7 51 56.9
TWI23G1223 Tripterygium wilfordii HOM05D007144 ORTHO05D008709 4.0e-07 58.9 55 58.2
CANSAT54G2482 Cannabis sativa HOM05D007144 ORTHO05D008709 5.2e-07 58.5 65 50.8
Atru.chr4.1901 Acer truncatum HOM05D007144 ORTHO05D008709 3.4e-06 55.8 65 49.2
Cre12.g484500 Chlamydomonas reinhardtii HOM05D007144 ORTHO05D008709 3.4e-06 55.8 44 56.8
QL01p017309 Quercus lobata HOM05D007144 ORTHO05D008709 4.4e-06 55.5 68 47.1


User provided reference genes

Program Settings