Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 5.0e-130 468.0 277 100.0
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 6.6e-114 414.5 278 92.1
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 2.1e-107 392.9 280 75.4
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 1.3e-85 320.5 279 68.5
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 1.2e-78 297.4 219 73.5
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.1e-76 290.8 205 74.1
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 2.4e-76 289.7 206 76.2
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 3.2e-76 289.3 219 67.1
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 3.2e-76 289.3 214 67.8
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 5.5e-76 288.5 215 69.8
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 1.2e-75 287.3 205 74.6
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.2e-75 287.3 220 68.6
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 1.2e-75 287.3 206 74.3
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 1.2e-75 287.3 218 67.0
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 2.7e-75 286.2 205 74.1
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.3e-74 283.9 205 73.7
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 2.3e-74 283.1 276 56.2
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 2.3e-74 283.1 216 64.8
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 3.0e-74 282.7 222 69.8
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 5.1e-74 282.0 216 67.1
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 8.7e-74 281.2 219 71.2
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 1.1e-73 280.8 216 65.7
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 1.9e-73 280.0 212 68.4
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 7.4e-73 278.1 222 68.0
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 6.2e-72 275.0 210 71.0
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 2.4e-71 273.1 219 65.3
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 2.4e-71 273.1 209 69.4
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 3.1e-71 272.7 207 68.1
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 5.3e-71 271.9 233 61.4
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 5.3e-71 271.9 217 65.9
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 6.9e-71 271.6 225 64.4
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 2.6e-70 269.6 217 62.2
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 4.5e-70 268.9 212 69.8
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 1.3e-69 267.3 205 67.8
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 3.8e-69 265.8 219 68.0
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 6.5e-69 265.0 219 68.0
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 8.4e-69 264.6 210 71.4
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 8.4e-69 264.6 223 67.3
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 1.1e-68 264.2 214 70.1
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 1.1e-68 264.2 211 69.2
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 1.4e-68 263.8 206 66.0
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 1.9e-68 263.5 204 66.7
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 2.5e-68 263.1 204 65.7
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 4.2e-68 262.3 204 65.7
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 4.2e-68 262.3 206 66.5
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 5.5e-68 261.9 206 66.0
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 5.5e-68 261.9 206 66.0
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 1.2e-67 260.8 209 66.5
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 4.6e-67 258.8 234 59.8
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 7.9e-67 258.1 200 65.5
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 1.8e-66 256.9 229 60.7
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 2.3e-66 256.5 208 67.3
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 3.0e-66 256.1 213 65.7
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 3.0e-66 256.1 201 65.2
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 5.1e-66 255.4 227 61.2
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 1.1e-65 254.2 210 64.3
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 1.9e-65 253.4 202 63.9
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 2.5e-65 253.1 204 68.1
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 5.7e-65 251.9 205 64.4
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 5.7e-65 251.9 211 63.5
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 7.4e-65 251.5 225 66.2
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 2.1e-64 250.0 234 60.3
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 1.1e-63 247.7 230 62.2
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 2.4e-63 246.5 226 59.3
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.4e-63 246.5 224 62.9
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 2.4e-63 246.5 224 63.8
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 3.1e-63 246.1 224 62.5
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 4.1e-63 245.7 228 59.6
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 5.3e-63 245.4 216 64.4
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 9.0e-63 244.6 205 62.9
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 9.0e-63 244.6 205 62.9
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 1.2e-62 244.2 202 62.9
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 1.2e-62 244.2 207 69.1
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 1.5e-62 243.8 213 60.6
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 5.9e-62 241.9 219 59.8
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 5.9e-62 241.9 221 61.5
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 7.6e-62 241.5 231 58.4
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 1.3e-61 240.7 219 60.7
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 1.7e-61 240.4 258 57.8
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 8.5e-61 238.0 220 66.8
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 1.4e-60 237.3 222 60.4
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 2.5e-60 236.5 227 60.8
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.6e-59 233.8 228 57.0
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 3.6e-59 232.6 208 58.2
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 3.6e-59 232.6 208 58.2
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 6.1e-59 231.9 230 56.1
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 2.3e-58 229.9 205 60.0
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 3.0e-58 229.6 174 69.0
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 5.1e-58 228.8 218 58.3
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 6.7e-58 228.4 237 55.3
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 1.9e-57 226.9 213 55.4
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 5.7e-57 225.3 221 61.5
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 5.7e-57 225.3 208 62.0
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 1.3e-56 224.2 220 62.3
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 1.6e-56 223.8 225 54.7
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 2.8e-56 223.0 176 66.5
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 3.7e-56 222.6 227 59.0
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 4.8e-56 222.2 175 72.6
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 1.1e-55 221.1 208 55.8
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 2.0e-54 216.9 176 65.3
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 5.9e-54 215.3 222 61.3
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 1.3e-53 214.2 213 62.0
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 1.7e-53 213.8 233 51.9
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 2.2e-53 213.4 232 51.7
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 2.2e-53 213.4 232 51.7
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 2.9e-53 213.0 231 51.5
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 2.9e-53 213.0 231 51.5
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 3.8e-53 212.6 229 52.4
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 5.0e-53 212.2 195 58.5
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 8.5e-53 211.5 238 55.0
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 1.4e-52 210.7 242 55.0
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 4.2e-52 209.1 237 54.9
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 5.5e-52 208.8 225 52.4
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 2.1e-51 206.8 237 54.4
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 3.9e-50 202.6 238 50.4
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 1.1e-49 201.1 171 57.9
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 3.3e-49 199.5 205 55.1
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 4.3e-49 199.1 181 61.3
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 1.7e-48 197.2 243 47.3
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 6.3e-48 195.3 227 48.5
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 1.4e-47 194.1 198 55.6
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 2.4e-47 193.4 193 58.0
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 5.3e-47 192.2 229 48.9
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 1.5e-46 190.7 209 51.2
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 1.0e-45 188.0 182 57.7
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 1.9e-44 183.7 141 73.0
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 7.2e-44 181.8 147 67.3
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 2.1e-43 180.3 176 52.8
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 3.6e-43 179.5 210 49.0
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 1.4e-42 177.6 198 52.0
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 2.0e-41 173.7 150 57.3
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 2.8e-40 169.9 195 48.7
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 4.8e-40 169.1 175 51.4
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 1.2e-38 164.5 229 44.5
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 3.8e-37 159.5 204 44.6
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 7.2e-36 155.2 138 62.3
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 1.4e-34 151.0 84 76.2
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 5.7e-33 145.6 140 61.4
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 9.7e-33 144.8 159 59.7
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.3e-32 144.4 141 63.1
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 8.2e-32 141.7 95 67.4
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 7.0e-31 138.7 133 61.7
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 2.0e-30 137.1 153 59.5
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 2.9e-29 133.3 154 46.1
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.5e-28 131.0 142 67.6
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 9.4e-28 128.3 64 81.2
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 1.6e-27 127.5 148 63.5
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 8.0e-27 125.2 77 72.7
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 4.0e-26 122.9 243 42.8
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 4.0e-26 122.9 174 38.5
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 2.6e-25 120.2 132 62.1
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 1.2e-22 111.3 149 58.4
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 1.6e-22 110.9 67 71.6
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 1.1e-20 104.8 168 36.9
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 2.5e-20 103.6 201 37.8
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 7.2e-20 102.1 80 56.2
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 4.7e-19 99.4 112 41.1
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 8.0e-19 98.6 98 62.2
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 2.6e-17 93.6 132 48.5
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 9.8e-17 91.7 101 62.4
Sed0017072 Sechium edule HOM05D004084 ORTHO05D004662 6.3e-16 89.0 101 49.5
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 9.2e-15 85.1 87 67.8
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 8.0e-11 72.0 64 46.9
ClCG02G022870 Citrullus lanatus HOM05D004084 ORTHO05D004662 8.9e-10 68.6 67 61.2
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 2.6e-09 67.0 73 56.2
QL01p017234 Quercus lobata HOM05D004084 ORTHO05D004662 2.9e-08 63.5 47 55.3
MBI19_g25614_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 8.3e-08 62.0 49 55.1
Haze_23225 Corylus avellana HOM05D004084 ORTHO05D004662 1.8e-07 60.8 101 37.6
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 2.4e-07 60.5 60 43.3
BraA10t44098Z Brassica rapa HOM05D004084 ORTHO05D004662 3.2e-07 60.1 90 40.0
A10p20270 Brassica napus HOM05D004084 ORTHO05D004662 4.1e-07 59.7 90 38.9
CSS0027788 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 7.8e-06 55.5 28 82.1


User provided reference genes

Program Settings