Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 0.0e+00 3495.3 1814 100.0
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 0.0e+00 3383.2 1820 96.4
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 0.0e+00 3214.9 1831 91.7
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 0.0e+00 3118.9 1810 88.8
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 0.0e+00 2537.7 1825 71.9
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 0.0e+00 2477.2 1813 69.9
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 0.0e+00 2475.7 1819 70.4
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 0.0e+00 2471.4 1876 68.7
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 0.0e+00 2457.2 1807 69.6
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 0.0e+00 2450.6 1819 69.3
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 0.0e+00 2441.4 1822 69.4
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 0.0e+00 2436.8 1820 68.7
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 0.0e+00 2436.0 1816 68.7
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 0.0e+00 2435.6 1820 69.1
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 0.0e+00 2427.1 1821 68.4
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 0.0e+00 2419.0 1819 68.2
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 0.0e+00 2418.7 1819 68.5
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 0.0e+00 2394.0 1816 68.8
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 0.0e+00 2393.6 1821 68.4
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 0.0e+00 2392.5 1825 67.7
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 0.0e+00 2391.7 1811 68.8
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2385.5 1815 68.2
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2384.4 1844 67.6
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2382.1 1844 67.5
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 0.0e+00 2381.3 1814 68.2
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 0.0e+00 2380.9 1810 69.2
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2377.4 1814 67.3
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2375.5 1807 68.2
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 0.0e+00 2374.4 1822 67.7
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 0.0e+00 2370.5 1821 66.0
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 0.0e+00 2369.3 1816 66.4
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 0.0e+00 2368.6 1809 66.2
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 2367.8 1825 67.2
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2364.0 1816 67.8
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 0.0e+00 2358.2 1813 68.0
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2350.1 1812 67.1
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 0.0e+00 2347.8 1812 66.8
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 0.0e+00 2332.4 1819 66.0
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2313.1 1807 67.0
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2303.9 1836 65.3
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 0.0e+00 2292.7 1805 64.7
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 0.0e+00 2290.8 1826 64.5
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 0.0e+00 2288.1 1797 66.9
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 0.0e+00 2286.9 1827 64.8
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2282.7 1812 65.5
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2282.7 1809 65.4
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 0.0e+00 2276.5 1805 65.3
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 0.0e+00 2276.5 1826 63.7
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 0.0e+00 2256.1 1847 63.8
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2254.2 1816 64.8
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 0.0e+00 2252.2 1859 64.1
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 0.0e+00 2248.8 1824 64.4
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 0.0e+00 2247.2 1824 63.1
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 0.0e+00 2224.1 1826 62.8
AT2G26780 Arabidopsis thaliana HOM05D004500 ORTHO05D005775 0.0e+00 2223.4 1812 62.8
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 0.0e+00 2219.1 2366 52.5
AL4G19970 Arabidopsis lyrata HOM05D004500 ORTHO05D005775 0.0e+00 2218.4 1812 62.6
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 0.0e+00 2216.4 1810 63.0
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2215.7 1811 63.7
Carub.0004s0721 Capsella rubella HOM05D004500 ORTHO05D005775 0.0e+00 2211.8 1803 62.6
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2210.6 1814 63.3
Thhalv10011180m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 0.0e+00 2206.0 1823 62.0
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2202.9 1818 63.0
CARHR118960 Cardamine hirsuta HOM05D004500 ORTHO05D005775 0.0e+00 2194.5 1809 62.0
Aa31LG5G9010 Aethionema arabicum HOM05D004500 ORTHO05D005775 0.0e+00 2191.8 1816 61.4
A08p01100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 2191.4 1816 61.9
Sp1g40640 Schrenkiella parvula HOM05D004500 ORTHO05D005775 0.0e+00 2191.4 1807 62.0
C03p92100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 2190.2 1810 62.1
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 0.0e+00 2169.8 1987 57.8
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 2163.7 1809 61.6
SGA_v2.0_scaffold29G12209 Striga asiatica HOM05D004500 ORTHO05D005775 0.0e+00 2149.0 1839 60.9
BraA08t32166Z Brassica rapa HOM05D004500 ORTHO05D005775 0.0e+00 2127.1 1829 60.3
BolC3t21527H Brassica oleracea HOM05D004500 ORTHO05D005775 0.0e+00 2125.1 1820 60.4
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 0.0e+00 2108.2 1806 60.5
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 0.0e+00 2105.5 1900 59.3
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 0.0e+00 2017.3 1821 57.7
Gohir.A09G108500 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 1960.7 1489 68.2
PSO339G3895 Papaver somniferum HOM05D004500 ORTHO05D005775 0.0e+00 1931.0 1504 65.9
Thecc.09G254300 Theobroma cacao HOM05D004500 ORTHO05D005775 0.0e+00 1872.1 1402 68.3
Solyc11g062310.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 0.0e+00 1817.7 1362 67.0
Peaxi162Scf00029g02524 Petunia axillaris HOM05D004500 ORTHO05D005775 0.0e+00 1804.3 1313 68.8
DCAR_023834 Daucus carota HOM05D004500 ORTHO05D005775 0.0e+00 1739.9 1401 64.0
COL.COLO4_06617 Corchorus olitorius HOM05D004500 ORTHO05D005775 0.0e+00 1713.0 1312 67.5
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 0.0e+00 1674.1 1371 65.1
AagrBONN_evm.TU.Sc2ySwM_117.694 Anthoceros agrestis HOM05D004500 ORTHO05D005775 0.0e+00 1600.9 1868 46.9
Lj1C1068G11 Lonicera japonica HOM05D004500 ORTHO05D005775 0.0e+00 1560.4 1338 61.6
Mapoly0009s0155 Marchantia polymorpha HOM05D004500 ORTHO05D005775 0.0e+00 1551.2 1855 45.6
Pp3c1_28010 Physcomitrium patens HOM05D004500 ORTHO05D005775 0.0e+00 1539.6 1894 45.9
Rhsim13G0205000 Rhododendron simsii HOM05D004500 ORTHO05D005775 0.0e+00 1530.8 1234 65.4
unitig_578.g16660 Utricularia gibba HOM05D004500 ORTHO05D005775 0.0e+00 1522.3 1836 47.7
SMO228G0054 Selaginella moellendorffii HOM05D004500 ORTHO05D005775 0.0e+00 1440.6 1647 47.5
Ah.06g194800 Amaranthus hybridus HOM05D004500 ORTHO05D005775 0.0e+00 1420.2 1153 63.6
Nitab4.5_0002026g0140 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 1415.2 1097 65.6
BcaB04g17016 Brassica carinata HOM05D004500 ORTHO05D005775 0.0e+00 1310.8 1349 54.7
Os11g0137300 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1258.4 1116 58.2
CDE02G2423 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 0.0e+00 1131.7 1052 56.7
Os12g0134200 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1115.1 907 62.2
CBR_g37490 Chara braunii HOM05D004500 ORTHO05D005775 1.7e-279 967.2 1714 35.1
SEGI_14316 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 6.6e-271 938.7 888 55.5
MCO04G062 Micromonas commoda HOM05D004500 ORTHO05D005775 1.1e-244 851.7 1738 33.4
PRCOL_00001646 Prasinoderma coloniale HOM05D004500 ORTHO05D005775 8.1e-237 825.5 1812 32.1
Cpa.g.sc34.185 Carica papaya HOM05D004500 ORTHO05D005775 5.3e-228 796.2 638 64.7
HPP92_022829 Vanilla planifolia HOM05D004500 ORTHO05D005775 4.2e-225 786.6 769 52.9
Psat7g231400 Pisum sativum HOM05D004500 ORTHO05D005775 3.1e-204 717.2 602 64.1
Cpa.g.sc34.186 Carica papaya HOM05D004500 ORTHO05D005775 3.2e-193 680.6 514 69.1
Os12g0148400 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 5.5e-177 626.7 663 50.8
COL.COLO4_06618 Corchorus olitorius HOM05D004500 ORTHO05D005775 1.4e-175 622.1 465 68.8
VMungo0647G1179 Vigna mungo HOM05D004500 ORTHO05D005775 3.2e-169 600.9 454 68.7
Cre04.g217935 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 2.2e-165 588.2 2017 26.6
Psat7g231320 Pisum sativum HOM05D004500 ORTHO05D005775 2.4e-156 558.1 452 66.4
Haze_23272 Corylus avellana HOM05D004500 ORTHO05D005775 2.1e-152 545.0 457 66.3
SEGI_37322 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 2.3e-151 541.6 500 57.6
vmacro04081 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.7e-146 525.4 347 74.1
Psat6g216840 Pisum sativum HOM05D004500 ORTHO05D005775 3.0e-130 471.5 316 75.9
CDE02G1339 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 1.9e-116 425.6 827 36.0
FAN21G2043 Fragaria x ananassa HOM05D004500 ORTHO05D005775 1.6e-112 412.5 367 61.3
Cfa026787 Carpinus fangiana HOM05D004500 ORTHO05D005775 4.8e-112 411.0 1630 24.8
Peaxi162Scf00029g02523 Petunia axillaris HOM05D004500 ORTHO05D005775 6.7e-98 364.0 290 63.8
Solyc11g062320.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 2.2e-93 349.0 297 61.3
Nitab4.5_0002026g0160 Nicotiana tabacum HOM05D004500 ORTHO05D005775 3.6e-91 341.7 283 61.5
vmacro04082 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 7.7e-70 270.8 161 83.9
MELO3C032687.2 Cucumis melo HOM05D004500 ORTHO05D005775 4.7e-67 261.5 147 91.8
vmacro04079 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.8e-66 259.6 275 52.4
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 6.3e-64 251.1 339 46.9
Hma1.2p1_0460F.1_g157660 Hydrangea macrophylla HOM05D004500 ORTHO05D005775 3.1e-63 248.8 194 65.5
HPP92_022831 Vanilla planifolia HOM05D004500 ORTHO05D005775 2.9e-61 242.3 344 36.6
SEGI_21027 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 7.7e-54 217.6 207 56.0
Gohir.A09G108566 Gossypium hirsutum HOM05D004500 ORTHO05D005775 8.9e-50 204.1 163 60.7
MELO3C033637.2 Cucumis melo HOM05D007110 ORTHO05D000233 7.5e-49 201.1 149 75.2
Thhalv10012226m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 3.9e-45 188.7 331 40.8
vmacro04083 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 2.5e-44 186.0 161 63.4
EL10Ac5g11937 Beta vulgaris HOM05D004500 ORTHO05D005775 5.6e-44 184.9 191 51.3
Psat6g216720 Pisum sativum HOM05D004500 ORTHO05D005775 3.1e-42 179.1 131 71.0
Psat0s1467g0200 Pisum sativum HOM05D004500 ORTHO05D005775 1.7e-40 173.3 182 54.9
Psat5g143880 Pisum sativum HOM05D004500 ORTHO05D001434 3.7e-40 172.2 182 54.9
VMungo0647G0474 Vigna mungo HOM05D004500 ORTHO05D005775 1.1e-39 170.6 167 58.7
PSO339G2400 Papaver somniferum HOM05D004500 ORTHO05D005775 1.4e-39 170.2 288 39.9
BcaC01g01445 Brassica carinata HOM05D004500 ORTHO05D005775 2.4e-39 169.5 143 63.6
SEGI_00521 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 2.4e-31 142.9 258 37.2
arahy.Tifrunner.gnm1.ann1.K04MEX Arachis hypogaea HOM05D004500 ORTHO05D005775 5.4e-31 141.7 153 56.2
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 7.0e-31 141.4 216 36.1
MELO3C035575.2 Cucumis melo HOM05D004500 ORTHO05D005775 2.3e-29 136.3 90 77.8
Solyc11g062300.3 Solanum lycopersicum HOM05D004500 ORTHO05D028702 4.3e-28 132.1 174 42.0
Lj1A1068G47 Lonicera japonica HOM05D004500 ORTHO05D005775 9.9e-25 120.9 78 80.8
Psat2g099920 Pisum sativum HOM05D001218 ORTHO05D015696 2.9e-24 119.4 84 69.0
SEGI_03367 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 4.1e-23 115.5 151 45.7
Psat2g090360 Pisum sativum HOM05D001218 ORTHO05D015696 1.2e-22 114.0 73 75.3
SEGI_28959 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 9.5e-20 104.4 203 34.5
Cre04.g217942 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 8.1e-19 101.3 211 28.4
Peaxi162Scf00029g02525 Petunia axillaris HOM05D004500 ORTHO05D028702 4.0e-18 99.0 172 37.8
SEGI_00784 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.2e-17 97.4 84 56.0
Lj1A1068G46 Lonicera japonica HOM05D001538 ORTHO05D011045 2.0e-17 96.7 92 56.5
MELO3C033954.2 Cucumis melo HOM05D004500 ORTHO05D005775 2.4e-15 89.7 48 93.8
HPP92_022828 Vanilla planifolia HOM05D004500 ORTHO05D005775 9.2e-15 87.8 78 61.5
MELO3C034995.2 Cucumis melo HOM05D004500 ORTHO05D005775 1.2e-14 87.4 48 91.7
Psat0s2295g0160 Pisum sativum HOM05D003609 ORTHO05D004185 8.7e-13 81.3 70 61.4
SEGI_16541 Sequoiadendron giganteum HOM05D004500 ORTHO05D011045 8.7e-13 81.3 68 60.3
SEGI_01442 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 3.1e-10 72.8 133 33.1
EL10Ac5g12062 Beta vulgaris HOM05D004500 ORTHO05D005775 1.5e-09 70.5 60 56.7
MD12G1083300 Malus domestica HOM05D004500 ORTHO05D005775 4.4e-09 68.9 73 56.2
Nitab4.5_0004629g0080 Nicotiana tabacum HOM05D004500 ORTHO05D028702 1.3e-08 67.4 71 43.7
SEGI_07125 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.7e-08 67.0 117 37.6
TPR.G24491 Trifolium pratense HOM05D003400 ORTHO05D003687 2.1e-06 60.1 78 47.4


User provided reference genes

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