Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 0.0e+00 1190.3 595 100.0
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 0.0e+00 1171.8 595 98.3
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 0.0e+00 1117.4 599 93.7
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 2.0e-264 915.6 554 83.6
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 7.3e-227 790.8 601 66.7
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 1.8e-225 786.2 594 66.3
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 3.7e-223 778.5 605 65.5
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 3.0e-220 768.8 603 63.8
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 6.6e-220 767.7 606 64.5
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 8.6e-220 767.3 601 65.1
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 3.1e-217 758.8 593 63.7
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 3.4e-216 755.4 599 63.6
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 7.5e-216 754.2 598 64.2
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 9.2e-214 747.3 604 62.7
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 9.2e-214 747.3 614 63.5
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 2.6e-208 729.2 608 62.5
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 4.4e-208 728.4 514 70.0
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 1.3e-207 726.9 631 61.0
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 1.7e-207 726.5 604 61.1
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 2.9e-207 725.7 593 60.2
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 3.7e-207 725.3 599 61.8
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 4.1e-206 721.8 598 62.0
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 1.6e-205 719.9 603 61.5
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 2.1e-205 719.5 593 61.6
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 1.0e-204 717.2 604 60.1
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 2.3e-204 716.1 596 60.7
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 3.9e-204 715.3 594 61.4
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 8.6e-204 714.1 604 60.1
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 8.6e-204 714.1 604 60.3
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 1.9e-203 713.0 604 60.3
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 3.3e-203 712.2 599 60.1
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 4.3e-203 711.8 600 61.5
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 7.3e-203 711.1 600 60.7
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 9.6e-203 710.7 599 60.6
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 1.2e-202 710.3 600 59.0
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 4.7e-202 708.4 600 61.0
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 6.2e-202 708.0 595 61.2
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 8.1e-202 707.6 602 61.8
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 1.1e-201 707.2 598 59.7
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 1.5e-200 703.4 600 58.5
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 3.4e-200 702.2 589 60.8
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 3.8e-199 698.7 600 59.5
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 2.4e-198 696.0 603 59.0
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 3.2e-198 695.7 596 60.2
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 2.7e-197 692.6 596 60.2
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 6.0e-197 691.4 518 66.6
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 6.0e-197 691.4 613 58.1
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.0e-196 690.6 596 59.9
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 1.3e-196 690.3 595 60.0
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 1.7e-196 689.9 596 60.1
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 1.1e-195 687.2 595 58.8
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 1.6e-194 683.3 607 56.7
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 2.1e-194 682.9 516 65.7
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 2.1e-194 682.9 591 59.7
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 6.2e-194 681.4 598 59.4
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 1.8e-193 679.9 659 55.4
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 4.9e-191 671.8 603 57.2
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 8.4e-191 671.0 598 58.7
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 2.4e-190 669.5 577 60.0
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 3.2e-190 669.1 597 58.6
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 3.2e-190 669.1 601 59.2
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 5.4e-190 668.3 592 57.8
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 1.2e-189 667.2 581 59.9
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 3.5e-189 665.6 576 58.7
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 4.6e-189 665.2 606 56.4
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 4.6e-189 665.2 793 47.3
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 7.9e-189 664.5 598 56.7
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 3.0e-188 662.5 597 56.6
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 8.7e-188 661.0 593 57.3
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 1.5e-187 660.2 600 56.3
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 1.5e-187 660.2 596 57.7
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 3.3e-187 659.1 597 56.4
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 4.3e-187 658.7 610 56.2
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 1.3e-186 657.1 597 56.3
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 1.6e-186 656.8 602 56.1
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 2.8e-186 656.0 583 58.5
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 3.6e-186 655.6 599 55.9
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 2.4e-185 652.9 614 55.4
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 4.0e-185 652.1 595 57.0
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 7.6e-184 647.9 596 56.4
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 7.6e-184 647.9 599 55.8
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 2.4e-182 642.9 594 56.4
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 1.9e-179 633.3 583 56.8
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 6.2e-178 628.2 606 54.6
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 5.8e-176 621.7 520 59.8
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 3.2e-174 615.9 543 58.9
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 2.7e-165 586.3 606 53.0
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 1.9e-163 580.1 509 57.6
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 4.3e-163 578.9 592 51.4
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 1.6e-162 577.0 488 59.4
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 6.7e-156 555.1 601 49.1
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 1.5e-155 553.9 603 50.1
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 2.2e-154 550.1 626 48.6
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 2.2e-154 550.1 573 50.4
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 7.9e-149 531.6 356 72.8
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 6.3e-146 521.9 469 57.1
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 6.3e-138 495.4 618 44.8
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 3.5e-120 436.4 558 43.2
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 4.7e-117 426.0 529 44.4
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 1.2e-115 421.4 492 44.9
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 6.4e-114 415.6 445 48.8
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 4.1e-113 412.9 389 53.0
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 1.3e-111 407.9 554 41.2
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 1.9e-110 404.1 304 65.5
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 3.6e-101 373.2 335 55.5
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 1.4e-84 318.2 214 76.2
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 2.1e-77 294.3 411 40.9
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 1.4e-76 291.6 216 69.9
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 4.5e-75 286.6 280 52.5
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 3.6e-69 266.9 339 41.0
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 1.4e-68 265.0 295 49.2
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 5.8e-67 259.6 178 73.6
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 7.6e-67 259.2 360 36.7
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 2.4e-65 254.2 319 40.8
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.6e-45 188.3 191 51.8
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 2.3e-39 167.9 122 71.3
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.5e-38 165.2 123 59.3
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 1.7e-37 161.8 112 70.5
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 8.8e-31 139.4 107 64.5
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 1.2e-27 129.0 560 24.5
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.5e-25 122.1 258 33.7
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 1.6e-24 118.6 98 56.1
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 2.7e-24 117.9 375 27.7
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 3.7e-21 107.5 141 39.0
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.4e-20 105.5 112 50.0
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 1.4e-20 105.5 85 61.2
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.8e-20 105.1 155 35.5
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 2.0e-19 101.7 70 67.1
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 8.5e-18 96.3 116 46.6
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 4.7e-16 90.5 165 35.8
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 5.2e-15 87.0 123 43.9
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 4.1e-12 77.4 94 47.9
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 5.4e-12 77.0 58 69.0
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 1.6e-11 75.5 82 51.2
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 5.9e-11 73.6 80 51.2
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 2.9e-10 71.2 253 24.1
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 8.5e-10 69.7 62 48.4
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 1.9e-09 68.6 138 32.6
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 2.5e-09 68.2 69 49.3
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 4.2e-09 67.4 52 55.8


User provided reference genes

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