Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 3.5e-183 644.8 320 100.0
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 3.5e-167 591.7 313 94.9
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 2.5e-149 532.3 297 90.6
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 1.0e-94 350.9 282 63.8
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 3.0e-94 349.4 317 60.9
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 9.1e-91 337.8 282 63.8
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 6.1e-87 325.1 288 60.1
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 3.1e-83 312.8 288 59.4
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 6.9e-83 311.6 292 58.6
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 3.4e-82 309.3 289 58.5
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 7.7e-82 308.1 282 57.4
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 7.7e-82 308.1 282 57.4
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 7.7e-82 308.1 283 58.3
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 1.7e-81 307.0 289 58.1
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 3.8e-81 305.8 282 58.2
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 2.5e-80 303.1 284 58.5
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 7.2e-80 301.6 284 59.2
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 1.2e-79 300.8 289 56.7
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 1.2e-79 300.8 282 58.5
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 2.7e-79 299.7 289 56.4
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 4.7e-79 298.9 282 56.4
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 1.0e-78 297.7 289 55.7
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.5e-77 293.9 253 62.8
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 2.0e-77 293.5 252 63.1
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 2.6e-77 293.1 247 61.5
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 3.3e-77 292.7 282 57.1
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 5.7e-77 292.0 283 55.8
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 7.4e-77 291.6 253 62.5
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 7.4e-77 291.6 162 89.5
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 8.2e-76 288.1 286 56.3
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 7.0e-75 285.0 282 55.3
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 2.6e-74 283.1 289 55.0
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 5.0e-73 278.9 282 54.6
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 8.5e-73 278.1 255 60.4
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 5.5e-72 275.4 283 53.4
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 3.0e-70 269.6 280 55.7
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 4.0e-70 269.2 293 52.9
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 6.7e-70 268.5 285 54.4
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 2.0e-69 266.9 286 52.8
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 7.5e-69 265.0 308 50.3
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 7.5e-69 265.0 308 50.3
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 2.4e-67 260.0 282 50.4
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 2.4e-67 260.0 331 45.9
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 9.1e-67 258.1 279 52.7
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 1.0e-65 254.6 285 54.0
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 2.9e-65 253.1 287 53.3
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 6.5e-65 251.9 295 52.5
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 1.9e-64 250.4 285 51.2
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 1.6e-63 247.3 263 53.6
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 4.7e-63 245.7 283 52.3
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 4.7e-63 245.7 378 40.7
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 1.0e-62 244.6 283 51.9
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.3e-62 243.4 253 54.9
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 8.8e-62 241.5 391 39.1
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 7.5e-61 238.4 283 47.7
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 1.4e-59 234.2 206 61.2
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 7.7e-58 228.4 281 48.4
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 1.6e-55 220.7 201 59.2
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 1.6e-55 220.7 226 53.5
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 3.6e-55 219.5 294 45.9
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 1.0e-54 218.0 297 46.1
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 3.0e-54 216.5 282 45.7
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 3.0e-54 216.5 254 48.0
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 8.8e-54 214.9 250 50.0
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 2.0e-53 213.8 241 49.8
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 4.4e-53 212.6 240 48.8
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 1.7e-52 210.7 291 43.0
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 2.4e-51 206.8 236 48.3
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 3.1e-51 206.5 220 52.3
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 5.4e-51 205.7 289 41.5
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 1.6e-50 204.1 196 56.1
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 7.8e-50 201.8 295 43.7
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 3.8e-49 199.5 200 55.5
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 3.8e-49 199.5 283 42.0
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 2.5e-48 196.8 320 40.3
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 5.6e-48 195.7 264 49.6
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 3.6e-47 193.0 287 43.9
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 3.6e-47 193.0 294 43.2
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 8.0e-47 191.8 287 43.9
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 1.0e-46 191.4 287 43.9
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 1.0e-46 191.4 287 43.9
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 3.0e-46 189.9 236 46.2
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 4.0e-46 189.5 215 48.8
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 4.0e-46 189.5 286 41.3
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 8.9e-46 188.3 287 43.6
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 8.9e-46 188.3 321 39.6
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 1.2e-45 188.0 286 42.0
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 2.6e-45 186.8 221 47.1
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 4.4e-45 186.0 282 40.4
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 5.7e-45 185.7 236 45.3
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 2.9e-44 183.3 293 38.9
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 2.7e-42 176.8 187 52.4
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 3.5e-42 176.4 285 36.8
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 3.5e-42 176.4 371 34.0
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 4.6e-42 176.0 306 40.2
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 2.3e-41 173.7 279 40.1
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 1.5e-40 171.0 298 37.2
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 1.9e-40 170.6 255 39.2
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 9.5e-40 168.3 232 44.8
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 2.1e-39 167.2 301 40.5
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 2.1e-39 167.2 271 42.4
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 3.6e-39 166.4 307 36.5
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 8.0e-39 165.2 200 47.5
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 1.8e-38 164.1 283 39.2
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 2.0e-37 160.6 295 39.0
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 2.6e-37 160.2 235 41.3
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 3.7e-36 156.4 279 36.9
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.4e-35 154.5 316 35.8
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 5.4e-35 152.5 295 39.0
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 2.7e-34 150.2 288 39.9
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 7.8e-34 148.7 297 36.7
Sed0023885 Sechium edule HOM05D005413 ORTHO05D006536 5.6e-32 142.5 82 85.4
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 9.5e-32 141.7 249 39.4
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 1.2e-31 141.4 290 37.6
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 6.2e-31 139.0 252 37.3
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 8.1e-31 138.7 179 48.0
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 5.2e-30 136.0 278 33.5
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 8.9e-30 135.2 142 50.0
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.5e-29 134.4 141 50.4
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 5.8e-29 132.5 158 50.0
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 1.7e-28 131.0 176 44.3
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 2.2e-28 130.6 205 43.4
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 2.9e-28 130.2 318 29.9
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 4.9e-28 129.4 280 35.0
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 2.1e-26 124.0 296 31.4
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 8.1e-23 112.1 322 31.1
Hma1.2p1_0298F.1_g117400 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.4e-22 111.3 119 52.1
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 1.3e-20 104.8 199 37.7
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 9.2e-19 98.6 199 36.2
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 3.5e-18 96.7 310 27.7
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 6.0e-18 95.9 286 29.4
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 1.7e-17 94.4 95 53.7
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 3.0e-17 93.6 203 33.5
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 3.9e-17 93.2 207 32.9
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 7.3e-16 89.0 262 28.6
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 2.1e-15 87.4 172 37.8
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 4.7e-15 86.3 121 43.8
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 4.7e-15 86.3 139 40.3
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 6.9e-14 82.4 135 36.3
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 2.2e-12 77.4 279 27.6
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 5.4e-11 72.8 83 48.2
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 1.1e-08 65.1 85 41.2
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 1.6e-07 61.2 52 59.6
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 1.1e-06 58.5 69 44.9
Haze_15139 Corylus avellana HOM05D005413 ORTHO05D006536 1.4e-06 58.2 97 35.1
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 4.0e-06 56.6 70 44.3


User provided reference genes

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