Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014503.2 Cucumis melo HOM05D006639 ORTHO05D008339 6.6e-71 270.8 156 100.0
CsaV3_6G038390 Cucumis sativus L. HOM05D006639 ORTHO05D008339 1.0e-63 246.9 141 94.3
ClCG02G022260 Citrullus lanatus HOM05D006639 ORTHO05D008339 5.6e-62 241.1 162 84.0
Thecc.09G282700 Theobroma cacao HOM05D006639 ORTHO05D008339 4.5e-43 178.3 124 76.6
GSVIVG01036120001 Vitis vinifera HOM05D006639 ORTHO05D008339 8.4e-42 174.1 137 67.9
Gorai.009G085200 Gossypium raimondii HOM05D006639 ORTHO05D008339 1.2e-40 170.2 121 73.6
Ciclev10029525m.g Citrus clementina HOM05D006639 ORTHO05D008339 2.1e-40 169.5 121 73.6
Gohir.D05G083500 Gossypium hirsutum HOM05D006639 ORTHO05D008339 3.5e-40 168.7 121 73.6
Rhsim13G0112100 Rhododendron simsii HOM05D006639 ORTHO05D008339 3.5e-40 168.7 141 68.1
PGR119G2179 Punica granatum HOM05D006639 ORTHO05D008339 6.0e-40 167.9 117 75.2
arahy.Tifrunner.gnm1.ann1.UG6V14 Arachis hypogaea HOM05D006639 ORTHO05D008339 1.3e-39 166.8 138 67.4
Eucgr.J00499 Eucalyptus grandis HOM05D006639 ORTHO05D008339 1.3e-39 166.8 130 70.8
arahy.Tifrunner.gnm1.ann1.I7PXCJ Arachis hypogaea HOM05D006639 ORTHO05D008339 1.8e-39 166.4 138 68.1
Lalb_Chr19g0136451 Lupinus albus HOM05D006639 ORTHO05D008339 2.3e-39 166.0 133 69.2
Ca_19409_v3 Cicer arietinum L. HOM05D006639 ORTHO05D008339 3.9e-39 165.2 130 71.5
Potri.009G163500 Populus trichocarpa HOM05D006639 ORTHO05D008339 8.7e-39 164.1 139 66.2
TAR636G3315 Trochodendron aralioides HOM05D006639 ORTHO05D008339 1.1e-38 163.7 133 66.2
CANSAT56G0593 Cannabis sativa HOM05D006639 ORTHO05D008339 4.3e-38 161.8 130 66.9
CANSAT56G1587 Cannabis sativa HOM05D006639 ORTHO05D008339 4.3e-38 161.8 130 66.9
Duzib168G1184 Durio zibethinus HOM05D006639 ORTHO05D008339 4.3e-38 161.8 114 73.7
Lj3g0014332 Lotus japonicus HOM05D006639 ORTHO05D008339 9.7e-38 160.6 115 73.0
TPR.G17231 Trifolium pratense HOM05D006639 ORTHO05D008339 9.7e-38 160.6 134 69.4
Nn6g34885 Nelumbo nucifera HOM05D006639 ORTHO05D008339 1.6e-37 159.8 121 69.4
Glyma.11G183100 Glycine max HOM05D006639 ORTHO05D008339 2.2e-37 159.5 116 74.1
Sabra09G0127600 Salix brachista HOM05D006639 ORTHO05D008339 2.2e-37 159.5 138 65.9
CSS0034800 Camellia sinensis var. sinensis HOM05D006639 ORTHO05D008339 2.8e-37 159.1 131 68.7
Oeu031474.1 Olea europaea HOM05D006639 ORTHO05D008339 8.2e-37 157.5 125 64.8
Sed0014981 Sechium edule HOM05D006639 ORTHO05D008339 1.1e-36 157.1 92 88.0
MBI17_g08336_MAGBIO Magnolia biondii HOM05D006639 ORTHO05D008339 1.8e-36 156.4 130 66.2
Manes.11G162100 Manihot esculenta HOM05D006639 ORTHO05D008339 1.8e-36 156.4 108 73.1
Medtr4g052950 Medicago truncatula HOM05D006639 ORTHO05D008339 1.8e-36 156.4 145 66.2
Phvul.011G094600 Phaseolus vulgaris HOM05D006639 ORTHO05D008339 3.1e-36 155.6 120 70.8
Solyc11g068480.2 Solanum lycopersicum HOM05D006639 ORTHO05D008339 6.9e-36 154.5 116 71.6
Migut.D02442 Erythranthe guttata HOM05D006639 ORTHO05D008339 9.0e-36 154.1 134 61.9
BraA07t29539Z Brassica rapa HOM05D006639 ORTHO05D008339 1.2e-35 153.7 104 73.1
Gohir.A05G080500 Gossypium hirsutum HOM05D006639 ORTHO05D008339 1.5e-35 153.3 105 75.2
Psat7g187880 Pisum sativum HOM05D006639 ORTHO05D008339 1.5e-35 153.3 120 72.5
VMungo1127G0544 Vigna mungo HOM05D006639 ORTHO05D008339 2.0e-35 152.9 120 70.0
FAN25G3607 Fragaria x ananassa HOM05D006639 ORTHO05D008339 3.4e-35 152.1 118 69.5
PSO339G4282 Papaver somniferum HOM05D006639 ORTHO05D008339 3.4e-35 152.1 128 64.1
Aqoxy4G02766 Aquilegia oxysepala HOM05D006639 ORTHO05D008339 5.9e-35 151.4 136 62.5
Nitab4.5_0000755g0110 Nicotiana tabacum HOM05D006639 ORTHO05D008339 5.9e-35 151.4 120 66.7
Nitab4.5_0010969g0010 Nicotiana tabacum HOM05D006639 ORTHO05D008339 5.9e-35 151.4 116 68.1
TWI31G0153 Tripterygium wilfordii HOM05D006639 ORTHO05D008339 5.9e-35 151.4 126 68.3
FvH4_3g24950 Fragaria vesca HOM05D006639 ORTHO05D008339 1.0e-34 150.6 107 74.8
PGSC0003DMG400026357 Solanum tuberosum HOM05D006639 ORTHO05D008339 1.0e-34 150.6 113 71.7
Sopen11g027190 Solanum pennellii HOM05D006639 ORTHO05D008339 1.3e-34 150.2 113 71.7
Aa31LG5G8810 Aethionema arabicum HOM05D006639 ORTHO05D008339 1.7e-34 149.8 133 60.9
THA.LOC104826426 Tarenaya hassleriana HOM05D006639 ORTHO05D008339 2.9e-34 149.1 106 69.8
A07p18230 Brassica napus HOM05D006639 ORTHO05D008339 3.8e-34 148.7 140 60.0
Oeu022427.1 Olea europaea HOM05D006639 ORTHO05D008339 5.0e-34 148.3 122 64.8
RcHm_v2.0_Chr5g0044741 Rosa chinensis HOM05D006639 ORTHO05D008339 5.0e-34 148.3 126 67.5
MSTRG.18760 Avicennia marina HOM05D006639 ORTHO05D008339 6.5e-34 147.9 122 63.9
BcaB02g10091 Brassica carinata HOM05D006639 ORTHO05D008339 6.5e-34 147.9 98 73.5
Glyma.12G089400 Glycine max HOM05D006639 ORTHO05D008339 6.5e-34 147.9 116 70.7
Peaxi162Scf00040g00018 Petunia axillaris HOM05D006639 ORTHO05D008339 6.5e-34 147.9 130 63.8
Prupe.6G130500 Prunus persica HOM05D006639 ORTHO05D008339 6.5e-34 147.9 137 62.8
BcaC02g10878 Brassica carinata HOM05D006639 ORTHO05D008339 8.5e-34 147.5 99 72.7
C04p24130 Brassica napus HOM05D006639 ORTHO05D008339 8.5e-34 147.5 99 72.7
BolC4t23910H Brassica oleracea HOM05D006639 ORTHO05D008339 8.5e-34 147.5 99 72.7
Hund18759 Selenicereus undatus HOM05D006639 ORTHO05D008339 1.1e-33 147.1 118 67.8
Cc01_g09080 Coffea canephora HOM05D006639 ORTHO05D008339 1.4e-33 146.7 125 60.8
FAN16G2085 Fragaria x ananassa HOM05D006639 ORTHO05D008339 1.4e-33 146.7 113 69.9
HanXRQChr14g0438101 Helianthus annuus HOM05D006639 ORTHO05D008339 1.4e-33 146.7 113 70.8
FAN21G1301 Fragaria x ananassa HOM05D006639 ORTHO05D008339 1.9e-33 146.4 134 62.7
QL01p012190 Quercus lobata HOM05D006639 ORTHO05D008339 1.9e-33 146.4 138 60.1
EL10Ac7g15828 Beta vulgaris HOM05D006639 ORTHO05D008339 2.5e-33 146.0 123 63.4
vmacro03320 Vaccinium macrocarpon HOM05D006639 ORTHO05D008339 2.5e-33 146.0 116 70.7
PSO384G2857 Papaver somniferum HOM05D006639 ORTHO05D008339 3.2e-33 145.6 124 62.9
Ah.15g095860 Amaranthus hybridus HOM05D006639 ORTHO05D008339 7.2e-33 144.4 120 65.0
AT2G27470 Arabidopsis thaliana HOM05D006639 ORTHO05D008339 9.4e-33 144.1 102 67.6
Sc12g0004540 Simmondsia chinensis HOM05D006639 ORTHO05D008339 9.4e-33 144.1 127 61.4
SGA_v2.0_scaffold22G09859 Striga asiatica HOM05D006639 ORTHO05D008339 9.4e-33 144.1 115 66.1
CDE08G1389 Ceratophyllum demersum HOM05D006639 ORTHO05D008339 2.7e-32 142.5 148 56.1
Haze_23370 Corylus avellana HOM05D006639 ORTHO05D008339 3.6e-32 142.1 95 75.8
HPP92_003216 Vanilla planifolia HOM05D006639 ORTHO05D008339 6.1e-32 141.4 142 56.3
Cfa010012 Carpinus fangiana HOM05D006639 ORTHO05D008339 7.9e-32 141.0 105 70.5
CiPaw.14G099800 Carya illinoinensis HOM05D006639 ORTHO05D008339 7.9e-32 141.0 95 74.7
CARHR120120 Cardamine hirsuta HOM05D006639 ORTHO05D008339 1.0e-31 140.6 108 65.7
AL4G21460 Arabidopsis lyrata HOM05D006639 ORTHO05D008339 1.8e-31 139.8 100 66.0
Os09g0568200 Oryza sativa ssp. japonica HOM05D006639 ORTHO05D008339 1.8e-31 139.8 131 57.3
Lsat_1_v5_gn_2_59441 Lactuca sativa HOM05D006639 ORTHO05D008339 3.0e-31 139.0 107 69.2
Sp4g10260 Schrenkiella parvula HOM05D006639 ORTHO05D008339 5.1e-31 138.3 142 52.8
BolC3t15529H Brassica oleracea HOM05D006639 ORTHO05D008339 8.8e-31 137.5 100 67.0
Carub.0004s0810 Capsella rubella HOM05D006639 ORTHO05D008339 1.1e-30 137.1 132 55.3
CAN.G1524.3 Capsicum annuum HOM05D006639 ORTHO05D008339 1.5e-30 136.7 112 67.9
ECA238G3612 Erigeron canadensis HOM05D006639 ORTHO05D008339 2.0e-30 136.3 102 72.5
Zm00001eb308280 Zea mays HOM05D006639 ORTHO05D008339 2.0e-30 136.3 132 56.1
DCAR_010346 Daucus carota HOM05D006639 ORTHO05D008339 5.7e-30 134.8 141 56.7
BcaC01g04942 Brassica carinata HOM05D006639 ORTHO05D008339 7.4e-30 134.4 100 66.0
C03p31860 Brassica napus HOM05D006639 ORTHO05D008339 1.3e-29 133.7 99 66.7
unitig_37.g12892 Utricularia gibba HOM05D006639 ORTHO05D008339 2.2e-29 132.9 118 60.2
ATR0776G083 Amborella trichopoda HOM05D006639 ORTHO05D008339 1.4e-28 130.2 133 55.6
Atru.BG.107.p Acer truncatum HOM05D006639 ORTHO05D008339 3.1e-28 129.0 83 75.9
FAN11G3713 Fragaria x ananassa HOM05D006639 ORTHO05D008339 3.1e-28 129.0 95 71.6
Thhalv10017865m.g Eutrema salsugineum HOM05D006639 ORTHO05D008339 6.9e-28 127.9 88 69.3
MD11G1164600 Malus domestica HOM05D006639 ORTHO05D008339 1.2e-27 127.1 169 47.9
SEGI_32267 Sequoiadendron giganteum HOM05D006639 ORTHO05D008339 1.2e-27 127.1 104 60.6
DCAR_006164 Daucus carota HOM05D006639 ORTHO05D008339 2.0e-27 126.3 91 72.5
Atru.chr3.3238 Acer truncatum HOM05D006639 ORTHO05D008339 3.4e-27 125.6 86 72.1
Lj2A946T24 Lonicera japonica HOM05D006639 ORTHO05D008339 3.4e-27 125.6 100 67.0
BcaB01g03073 Brassica carinata HOM05D006639 ORTHO05D008339 7.7e-27 124.4 162 46.9
Lj2A964T5 Lonicera japonica HOM05D006639 ORTHO05D008339 1.0e-26 124.0 100 66.0
AagrBONN_evm.TU.Sc2ySwM_362.1778 Anthoceros agrestis HOM05D006639 ORTHO05D008339 1.8e-23 113.2 122 52.5
Mapoly0105s0006 Marchantia polymorpha HOM05D006639 ORTHO05D008339 3.9e-23 112.1 143 46.2
Pp3c26_8280 Physcomitrium patens HOM05D006639 ORTHO05D008339 3.9e-23 112.1 132 47.7
SMO340G0007 Selaginella moellendorffii HOM05D006639 ORTHO05D008339 5.1e-23 111.7 107 56.1
ECA238G0189 Erigeron canadensis HOM05D006639 ORTHO05D008339 2.6e-19 99.4 94 58.5
PRCOL_00006285 Prasinoderma coloniale HOM05D006639 ORTHO05D008339 1.7e-18 96.7 108 47.2
Cre07.g341800 Chlamydomonas reinhardtii HOM05D006639 ORTHO05D008339 3.2e-17 92.4 106 47.2
MCO15G204 Micromonas commoda HOM05D006639 ORTHO05D008339 6.1e-16 88.2 109 44.0
COL.COLO4_19857 Corchorus olitorius HOM05D006639 ORTHO05D008339 4.1e-12 75.5 54 74.1
Nn1g05220 Nelumbo nucifera HOM05D006639 ORTHO05D008339 1.2e-08 63.9 51 62.7
Nn1g05039 Nelumbo nucifera HOM05D006639 ORTHO05D008339 4.7e-08 62.0 49 63.3
Nn053s41924 Nelumbo nucifera HOM05D006639 ORTHO05D008339 2.3e-07 59.7 83 47.0
Nn1g05216 Nelumbo nucifera HOM05D006639 ORTHO05D008339 2.3e-07 59.7 83 47.0
Nn1g05215 Nelumbo nucifera HOM05D006639 ORTHO05D008339 3.0e-07 59.3 49 61.2
HanXRQChr16g0505691 Helianthus annuus HOM05D003169 ORTHO05D003700 4.0e-07 58.9 56 53.6
Lsat_1_v5_gn_6_29620 Lactuca sativa HOM05D000297 ORTHO05D000193 8.8e-07 57.8 90 33.3
PGSC0003DMG400034306 Solanum tuberosum HOM05D000297 ORTHO05D012389 4.4e-06 55.5 78 37.2


User provided reference genes

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