Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014489.2 Cucumis melo HOM05D006303 ORTHO05D008007 6.4e-170 600.9 356 100.0
CsaV3_6G038260 Cucumis sativus L. HOM05D006303 ORTHO05D008007 2.8e-157 558.9 361 93.9
ClCG06G006020 Citrullus lanatus HOM05D006303 ORTHO05D008007 1.9e-137 493.0 357 85.2
Sed0009344 Sechium edule HOM05D006303 ORTHO05D008007 4.8e-125 451.8 344 79.9
Manes.15G026800 Manihot esculenta HOM05D006303 ORTHO05D008007 4.5e-83 312.4 372 60.5
CiPaw.01G163800 Carya illinoinensis HOM05D006303 ORTHO05D008007 1.2e-80 304.3 364 57.7
CiPaw.02G095400 Carya illinoinensis HOM05D006303 ORTHO05D008007 1.7e-77 293.9 359 59.9
Duzib052G1015 Durio zibethinus HOM05D006303 ORTHO05D008007 6.3e-77 292.0 376 58.0
Thecc.04G227500 Theobroma cacao HOM05D006303 ORTHO05D008007 8.3e-77 291.6 383 57.4
Manes.03G181100 Manihot esculenta HOM05D006303 ORTHO05D008007 2.4e-76 290.0 364 57.4
COL.COLO4_06194 Corchorus olitorius HOM05D006303 ORTHO05D008007 1.2e-75 287.7 372 56.5
Haze_00877 Corylus avellana HOM05D006303 ORTHO05D008007 2.3e-74 283.5 351 59.5
Cfa015618 Carpinus fangiana HOM05D006303 ORTHO05D008007 1.1e-73 281.2 364 58.5
QL06p003344 Quercus lobata HOM05D006303 ORTHO05D008007 1.6e-72 277.3 359 57.1
VMungo1215G3149 Vigna mungo HOM05D006303 ORTHO05D008007 4.7e-72 275.8 369 54.7
Sabra10G0052900 Salix brachista HOM05D006303 ORTHO05D008007 2.0e-70 270.4 383 54.8
Duzib212G0816 Durio zibethinus HOM05D006303 ORTHO05D008007 5.7e-70 268.9 359 58.2
Lj1g0001361 Lotus japonicus HOM05D006303 ORTHO05D008007 2.2e-69 266.9 383 53.5
TAR365G0083 Trochodendron aralioides HOM05D006303 ORTHO05D008007 4.9e-69 265.8 343 58.6
Nn4g26265 Nelumbo nucifera HOM05D006303 ORTHO05D008007 9.2e-68 261.5 348 53.7
Potri.010G090500 Populus trichocarpa HOM05D006303 ORTHO05D008007 7.8e-67 258.5 368 55.2
Cc03_g03480 Coffea canephora HOM05D006303 ORTHO05D008007 3.9e-66 256.1 380 50.5
Psat4g211440 Pisum sativum HOM05D006303 ORTHO05D008007 5.0e-66 255.8 358 53.9
FAN07G1279 Fragaria x ananassa HOM05D006303 ORTHO05D008007 3.3e-65 253.1 356 52.5
Aqoxy5G00502 Aquilegia oxysepala HOM05D006303 ORTHO05D008007 4.3e-65 252.7 342 55.3
Medtr5g005960 Medicago truncatula HOM05D006303 ORTHO05D008007 2.8e-64 250.0 351 51.9
Glyma.11G004400 Glycine max HOM05D006303 ORTHO05D008007 1.8e-63 247.3 396 50.5
TWI09G0488 Tripterygium wilfordii HOM05D006303 ORTHO05D008007 8.9e-63 245.0 350 52.6
Atru.chr4.2516 Acer truncatum HOM05D006303 ORTHO05D008007 1.2e-62 244.6 358 53.6
Nn1g02244 Nelumbo nucifera HOM05D006303 ORTHO05D008007 1.5e-62 244.2 357 51.0
Peaxi162Scf00437g00041 Petunia axillaris HOM05D006303 ORTHO05D008007 1.5e-62 244.2 374 50.0
Cpa.g.sc147.34 Carica papaya HOM05D006303 ORTHO05D008007 2.6e-62 243.4 349 55.0
Gohir.A09G214600 Gossypium hirsutum HOM05D006303 ORTHO05D008007 7.5e-62 241.9 363 55.1
Gorai.006G237600 Gossypium raimondii HOM05D006303 ORTHO05D008007 1.3e-61 241.1 363 55.1
TWI53G0528 Tripterygium wilfordii HOM05D006303 ORTHO05D008007 2.9e-61 240.0 339 53.1
TPR.G37902 Trifolium pratense HOM05D006303 ORTHO05D008007 4.9e-61 239.2 360 53.1
FAN22G0434 Fragaria x ananassa HOM05D006303 ORTHO05D008007 1.1e-60 238.0 360 50.8
Phvul.002G047200 Phaseolus vulgaris HOM05D006303 ORTHO05D008007 1.1e-60 238.0 354 52.3
PGSC0003DMG400031852 Solanum tuberosum HOM05D006303 ORTHO05D008007 1.9e-60 237.3 360 52.2
FvH4_4g15080 Fragaria vesca HOM05D006303 ORTHO05D008007 2.4e-60 236.9 360 51.4
FAN12G1910 Fragaria x ananassa HOM05D006303 ORTHO05D008007 7.0e-60 235.3 360 51.1
FAN17G3084 Fragaria x ananassa HOM05D006303 ORTHO05D008007 2.7e-59 233.4 357 51.8
Dinv38426 Davidia involucrata HOM05D006303 ORTHO05D008007 3.5e-59 233.0 349 52.4
HanXRQChr15g0466041 Helianthus annuus HOM05D006303 ORTHO05D008007 4.6e-59 232.6 345 49.6
Solyc09g075750.1 Solanum lycopersicum HOM05D006303 ORTHO05D008007 3.9e-58 229.6 354 51.4
Oeu004490.1 Olea europaea HOM05D006303 ORTHO05D008007 6.6e-58 228.8 356 51.4
Oeu034363.1 Olea europaea HOM05D006303 ORTHO05D008007 6.6e-58 228.8 343 51.9
Sopen09g030560 Solanum pennellii HOM05D006303 ORTHO05D008007 6.6e-58 228.8 354 50.6
Lsat_1_v5_gn_5_148441 Lactuca sativa HOM05D006303 ORTHO05D008007 1.5e-57 227.6 350 49.1
Gohir.D09G217100 Gossypium hirsutum HOM05D006303 ORTHO05D008007 5.6e-57 225.7 347 53.9
Hma1.2p1_0517F.1_g171030 Hydrangea macrophylla HOM05D006303 ORTHO05D008007 8.1e-56 221.9 360 49.2
ECA234G3153 Erigeron canadensis HOM05D006303 ORTHO05D008007 2.3e-55 220.3 355 48.2
Ah.04g154500 Amaranthus hybridus HOM05D006303 ORTHO05D008007 6.8e-55 218.8 350 51.4
MSTRG.4016 Avicennia marina HOM05D006303 ORTHO05D008007 8.9e-55 218.4 358 50.6
CANSAT78G1152 Cannabis sativa HOM05D006303 ORTHO05D008007 2.6e-54 216.9 393 48.6
Nitab4.5_0000260g0090 Nicotiana tabacum HOM05D006303 ORTHO05D008007 2.9e-53 213.4 362 48.3
Nitab4.5_0007531g0010 Nicotiana tabacum HOM05D006303 ORTHO05D008007 3.7e-53 213.0 363 48.2
MD13G1188500 Malus domestica HOM05D006303 ORTHO05D008007 8.3e-53 211.8 347 49.0
Ca_24387_v3 Cicer arietinum L. HOM05D006303 ORTHO05D008007 1.9e-52 210.7 322 48.4
Ciclev10005353m.g Citrus clementina HOM05D006303 ORTHO05D008007 1.6e-51 207.6 354 50.6
MD16G1188900 Malus domestica HOM05D006303 ORTHO05D008007 7.8e-51 205.3 336 48.2
arahy.Tifrunner.gnm1.ann1.RSQ2PF Arachis hypogaea HOM05D006303 ORTHO05D008007 5.1e-50 202.6 338 47.0
Prupe.1G155600 Prunus persica HOM05D006303 ORTHO05D008007 2.5e-49 200.3 331 48.3
PSO384G0046 Papaver somniferum HOM05D006303 ORTHO05D008007 5.6e-49 199.1 389 45.0
Nn2g13850 Nelumbo nucifera HOM05D006303 ORTHO05D008007 7.3e-49 198.7 301 49.2
Dinv44508 Davidia involucrata HOM05D006303 ORTHO05D008007 2.1e-48 197.2 356 47.5
Aqoxy2G03353 Aquilegia oxysepala HOM05D006303 ORTHO05D008007 2.8e-48 196.8 297 50.5
MSTRG.24747 Avicennia marina HOM05D006303 ORTHO05D008007 1.4e-47 194.5 342 46.2
PGR004G2192 Punica granatum HOM05D006303 ORTHO05D008007 1.8e-47 194.1 373 42.9
DCAR_027185 Daucus carota HOM05D006303 ORTHO05D008007 1.2e-46 191.4 339 45.4
THA.LOC104802760 Tarenaya hassleriana HOM05D006303 ORTHO05D008007 3.4e-46 189.9 326 46.9
C07p41810 Brassica napus HOM05D006303 ORTHO05D008007 7.8e-43 178.7 315 48.3
BcaNung02811 Brassica carinata HOM05D006303 ORTHO05D008007 1.7e-42 177.6 315 48.3
BolC7t44712H Brassica oleracea HOM05D006303 ORTHO05D008007 1.7e-42 177.6 315 48.3
BcaB04g19742 Brassica carinata HOM05D006303 ORTHO05D008007 3.0e-42 176.8 324 47.8
A06p36730 Brassica napus HOM05D006303 ORTHO05D008007 1.9e-41 174.1 312 48.1
BraA06t26595Z Brassica rapa HOM05D006303 ORTHO05D008007 1.9e-41 174.1 312 48.1
BolC9t53571H Brassica oleracea HOM05D006303 ORTHO05D008007 5.2e-39 166.0 327 44.6
Lsat_1_v5_gn_7_65920 Lactuca sativa HOM05D006303 ORTHO05D008007 5.2e-39 166.0 335 41.5
BcaC04g23610 Brassica carinata HOM05D006303 ORTHO05D008007 6.8e-39 165.6 309 45.6
BcaNung03972 Brassica carinata HOM05D006303 ORTHO05D008007 3.4e-38 163.3 316 46.8
C09p06490 Brassica napus HOM05D006303 ORTHO05D008007 3.4e-38 163.3 313 45.4
Sc13g0004270 Simmondsia chinensis HOM05D006303 ORTHO05D008007 1.3e-37 161.4 344 45.9
SalBow5G2627 Salvia bowleyana HOM05D006303 ORTHO05D008007 4.9e-37 159.5 362 42.0
SalBow5G4234 Salvia bowleyana HOM05D006303 ORTHO05D008007 5.4e-36 156.0 366 41.5
A09p05910 Brassica napus HOM05D006303 ORTHO05D008007 2.1e-35 154.1 314 44.9
arahy.Tifrunner.gnm1.ann1.S8XWMG Arachis hypogaea HOM05D006303 ORTHO05D008007 2.3e-34 150.6 339 41.9
PSO135G0705 Papaver somniferum HOM05D006303 ORTHO05D008007 9.6e-33 145.2 387 37.2
arahy.Tifrunner.gnm1.ann1.KMTU0V Arachis hypogaea HOM05D006303 ORTHO05D008007 4.8e-32 142.9 331 41.4
BraA09t36233Z Brassica rapa HOM05D006303 ORTHO05D008007 6.2e-32 142.5 308 42.9
CsaV3_3G013490 Cucumis sativus L. HOM05D006303 ORTHO05D008007 8.1e-32 142.1 335 42.4
MBI17_g34761_MAGBIO Magnolia biondii HOM05D006303 ORTHO05D008007 4.0e-31 139.8 334 41.0
ClCG05G005270 Citrullus lanatus HOM05D006303 ORTHO05D008007 9.0e-31 138.7 337 41.5
MELO3C006546.2 Cucumis melo HOM05D006303 ORTHO05D008007 2.0e-30 137.5 335 40.9
Sp2g21520 Schrenkiella parvula HOM05D006303 ORTHO05D008007 5.8e-30 136.0 327 45.0
Thhalv10004558m.g Eutrema salsugineum HOM05D006303 ORTHO05D008007 2.2e-29 134.0 329 41.9
AL6G38240 Arabidopsis lyrata HOM05D006303 ORTHO05D008007 3.8e-29 133.3 352 40.3
Zm00001eb350820 Zea mays HOM05D006303 ORTHO05D008007 1.1e-28 131.7 336 40.5
AT5G26230 Arabidopsis thaliana HOM05D006303 ORTHO05D008007 3.2e-28 130.2 333 39.9
CARHR187140 Cardamine hirsuta HOM05D006303 ORTHO05D008007 1.2e-27 128.3 331 40.8
PSO717G0040 Papaver somniferum HOM05D006303 ORTHO05D008007 1.2e-27 128.3 366 38.0
PSO675G0548 Papaver somniferum HOM05D006303 ORTHO05D008007 1.6e-27 127.9 366 38.5
HPP92_003595 Vanilla planifolia HOM05D006303 ORTHO05D008007 4.6e-27 126.3 333 41.4
Carub.0006s2405 Capsella rubella HOM05D006303 ORTHO05D008007 3.0e-26 123.6 336 39.6
Migut.G00317 Erythranthe guttata HOM05D006303 ORTHO05D008007 3.9e-26 123.2 230 47.0
SalBow2G0078 Salvia bowleyana HOM05D006303 ORTHO05D008007 3.3e-25 120.2 340 38.2
EL10As3g23363 Beta vulgaris HOM05D006303 ORTHO05D008007 7.4e-25 119.0 364 36.3
Nn3g18018 Nelumbo nucifera HOM05D006303 ORTHO05D008007 2.1e-24 117.5 157 52.2
Rhsim04G0205200 Rhododendron simsii HOM05D006303 ORTHO05D008007 2.8e-24 117.1 157 52.2
Aa31LG11G10320 Aethionema arabicum HOM05D006303 ORTHO05D008007 4.8e-24 116.3 244 46.3
Sed0019333 Sechium edule HOM05D006303 ORTHO05D008007 1.2e-22 111.7 341 35.5
GSVIVG01017928001 Vitis vinifera HOM05D006303 ORTHO05D008007 4.9e-21 106.3 336 37.2
AUR62038095 Chenopodium quinoa HOM05D006303 ORTHO05D008007 1.9e-20 104.4 169 46.7
Nn3g18017 Nelumbo nucifera HOM05D006303 ORTHO05D008007 1.6e-19 101.3 108 62.0
SGA_v2.0_scaffold10G05105 Striga asiatica HOM05D006303 ORTHO05D008007 1.8e-18 97.8 213 38.5
Os05g0390600 Oryza sativa ssp. japonica HOM05D006303 ORTHO05D008007 1.6e-16 91.3 370 35.4
Lj6C598T9 Lonicera japonica HOM05D006303 ORTHO05D008007 1.1e-15 88.6 92 59.8
Actinidia40170 Actinidia chinensis HOM05D006303 ORTHO05D008007 9.0e-15 85.5 242 34.7
SGA_v2.0_scaffold257G45734 Striga asiatica HOM05D006303 ORTHO05D008007 2.6e-14 84.0 233 36.9
ATR0626G102 Amborella trichopoda HOM05D006303 ORTHO05D008007 5.8e-14 82.8 228 39.5
AUR62038636 Chenopodium quinoa HOM05D006303 ORTHO05D008007 6.0e-11 72.8 308 29.5
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 5.7e-09 66.2 349 27.8
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 9.6e-09 65.5 321 28.3
SEGI_38862 Sequoiadendron giganteum HOM05D006303 ORTHO05D008007 9.6e-09 65.5 385 28.8
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 2.1e-08 64.3 364 28.8
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 4.8e-08 63.2 350 28.0
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 3.1e-07 60.5 344 27.0
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 5.3e-07 59.7 340 27.4
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 5.3e-07 59.7 307 29.3
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 5.3e-07 59.7 346 26.6
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 6.9e-07 59.3 336 28.6
AT2G37380 Arabidopsis thaliana HOM05D002337 ORTHO05D002412 1.5e-06 58.2 39 71.8
Nn2g11148 Nelumbo nucifera HOM05D006303 ORTHO05D008007 1.5e-06 58.2 33 84.8
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 1.5e-06 58.2 335 26.0
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 2.6e-06 57.4 349 26.9
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 3.4e-06 57.0 337 27.3
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 5.9e-06 56.2 307 28.0
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 5.9e-06 56.2 336 28.6
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 7.6e-06 55.8 313 28.4
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 7.6e-06 55.8 349 25.8
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 7.6e-06 55.8 297 28.6


User provided reference genes

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