Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014462.2 Cucumis melo HOM05D003750 ORTHO05D004337 8.2e-138 494.6 451 100.0
CsaV3_6G038000 Cucumis sativus L. HOM05D003750 ORTHO05D004337 2.8e-85 320.1 469 81.2
ClCG09G022350 Citrullus lanatus HOM05D003750 ORTHO05D004337 1.7e-82 310.8 517 63.2
Sed0024619 Sechium edule HOM05D003750 ORTHO05D004337 7.5e-59 232.3 509 63.9
CiPaw.03G189300 Carya illinoinensis HOM05D003750 ORTHO05D004337 1.3e-47 194.9 115 76.5
QL08p043924 Quercus lobata HOM05D003750 ORTHO05D004337 3.9e-47 193.4 159 61.0
Gohir.D04G037100 Gossypium hirsutum HOM05D003750 ORTHO05D004337 4.3e-46 189.9 134 65.7
Gorai.012G041900 Gossypium raimondii HOM05D003750 ORTHO05D004337 1.3e-45 188.3 134 64.9
Cfa022914 Carpinus fangiana HOM05D003750 ORTHO05D004337 2.8e-45 187.2 134 66.4
Lj6g0002200 Lotus japonicus HOM05D003750 ORTHO05D004337 6.2e-45 186.0 109 77.1
TWI14G1010 Tripterygium wilfordii HOM05D003750 ORTHO05D004337 1.1e-44 185.3 129 64.3
LjContig00310g0001182 Lotus japonicus HOM05D003750 ORTHO05D004337 1.4e-44 184.9 126 69.0
Gohir.A05G378400 Gossypium hirsutum HOM05D003750 ORTHO05D004337 1.8e-44 184.5 134 64.2
Haze_13489 Corylus avellana HOM05D003750 ORTHO05D004337 3.1e-44 183.7 137 67.2
Psat2g014640 Pisum sativum HOM05D003750 ORTHO05D004337 3.1e-44 183.7 129 67.4
Glyma.02G287400 Glycine max HOM05D003750 ORTHO05D004337 4.0e-44 183.3 116 72.4
Glyma.14G027551 Glycine max HOM05D003750 ORTHO05D004337 5.3e-44 183.0 115 72.2
Lalb_Chr17g0348311 Lupinus albus HOM05D003750 ORTHO05D004337 5.3e-44 183.0 117 70.9
Phvul.008G190900 Phaseolus vulgaris HOM05D003750 ORTHO05D004337 5.3e-44 183.0 141 63.1
arahy.Tifrunner.gnm1.ann1.Y7JGW6 Arachis hypogaea HOM05D003750 ORTHO05D004337 1.2e-43 181.8 123 68.3
VMungo0647G1422 Vigna mungo HOM05D003750 ORTHO05D004337 1.2e-43 181.8 140 63.6
Potri.005G200900 Populus trichocarpa HOM05D003750 ORTHO05D004337 1.5e-43 181.4 130 65.4
TWI59G1023 Tripterygium wilfordii HOM05D003750 ORTHO05D004337 1.5e-43 181.4 129 63.6
VMungo0540G2251 Vigna mungo HOM05D003750 ORTHO05D004337 1.5e-43 181.4 147 64.6
arahy.Tifrunner.gnm1.ann1.UWZ29M Arachis hypogaea HOM05D003750 ORTHO05D004337 2.6e-43 180.6 123 67.5
Duzib187G0136 Durio zibethinus HOM05D003750 ORTHO05D004337 3.4e-43 180.3 122 67.2
Lalb_Chr04g0248731 Lupinus albus HOM05D003750 ORTHO05D004337 7.6e-43 179.1 115 70.4
Ca_27365_v3 Cicer arietinum L. HOM05D003750 ORTHO05D004337 9.9e-43 178.7 137 65.7
Glyma.08G309700 Glycine max HOM05D003750 ORTHO05D004337 9.9e-43 178.7 150 61.3
Phvul.006G033900 Phaseolus vulgaris HOM05D003750 ORTHO05D004337 9.9e-43 178.7 133 65.4
Glyma.18G106400 Glycine max HOM05D003750 ORTHO05D004337 1.3e-42 178.3 149 62.4
Sabra05G0152900 Salix brachista HOM05D003750 ORTHO05D004337 1.7e-42 177.9 132 64.4
COL.COLO4_33737 Corchorus olitorius HOM05D003750 ORTHO05D004337 2.9e-42 177.2 141 58.9
Medtr3g089570 Medicago truncatula HOM05D003750 ORTHO05D004337 6.4e-42 176.0 109 72.5
Potri.002G060800 Populus trichocarpa HOM05D003750 ORTHO05D004337 8.4e-42 175.6 438 35.6
Cpa.g.sc50.77 Carica papaya HOM05D003750 ORTHO05D004337 1.4e-41 174.9 121 66.1
Psat0s4925g0080 Pisum sativum HOM05D003750 ORTHO05D004337 1.4e-41 174.9 134 62.7
Manes.01G128300 Manihot esculenta HOM05D003750 ORTHO05D004337 1.9e-41 174.5 114 71.9
TPR.G12519 Trifolium pratense HOM05D003750 ORTHO05D004337 1.9e-41 174.5 120 66.7
Lalb_Chr10g0106741 Lupinus albus HOM05D003750 ORTHO05D004337 2.4e-41 174.1 115 67.8
Atru.chr6.1510 Acer truncatum HOM05D003750 ORTHO05D004337 1.2e-40 171.8 118 67.8
Eucgr.K01198 Eucalyptus grandis HOM05D003750 ORTHO05D004337 1.2e-40 171.8 154 57.8
Duzib264G0293 Durio zibethinus HOM05D003750 ORTHO05D004337 1.6e-40 171.4 110 70.9
THA.LOC104803179 Tarenaya hassleriana HOM05D003750 ORTHO05D004337 2.1e-40 171.0 127 63.8
Duzib147G0801 Durio zibethinus HOM05D003750 ORTHO05D004337 2.7e-40 170.6 110 70.0
Thecc.01G160900 Theobroma cacao HOM05D003750 ORTHO05D004337 2.7e-40 170.6 110 70.0
Prupe.3G171000 Prunus persica HOM05D003750 ORTHO05D004337 4.6e-40 169.9 452 38.5
Sabra02G0049300 Salix brachista HOM05D003750 ORTHO05D004337 2.3e-39 167.5 139 58.3
Actinidia11198 Actinidia chinensis HOM05D003750 ORTHO05D004337 3.9e-39 166.8 152 55.3
Ciclev10032169m.g Citrus clementina HOM05D003750 ORTHO05D004337 5.1e-39 166.4 127 63.0
vmacro12451 Vaccinium macrocarpon HOM05D003750 ORTHO05D004337 5.1e-39 166.4 208 58.2
PGR142G2515 Punica granatum HOM05D003750 ORTHO05D004337 6.6e-39 166.0 120 64.2
Lsat_1_v5_gn_3_35901 Lactuca sativa HOM05D003750 ORTHO05D004337 8.7e-39 165.6 144 59.7
CANSAT64G2056 Cannabis sativa HOM05D003750 ORTHO05D004337 1.5e-38 164.9 121 63.6
Cc05_g09310 Coffea canephora HOM05D003750 ORTHO05D004337 1.5e-38 164.9 130 63.1
Lalb_Chr20g0108881 Lupinus albus HOM05D003750 ORTHO05D004337 2.5e-38 164.1 114 68.4
HanXRQChr06g0171371 Helianthus annuus HOM05D003750 ORTHO05D004337 3.3e-38 163.7 131 64.1
Lalb_Chr19g0137861 Lupinus albus HOM05D003750 ORTHO05D004337 2.8e-37 160.6 109 68.8
CSS0030446 Camellia sinensis var. sinensis HOM05D003750 ORTHO05D004337 3.6e-37 160.2 121 62.8
TAR626G1101 Trochodendron aralioides HOM05D003750 ORTHO05D004337 6.2e-37 159.5 118 62.7
MD17G1140600 Malus domestica HOM05D003750 ORTHO05D004337 1.4e-36 158.3 120 65.0
MD09G1154000 Malus domestica HOM05D003750 ORTHO05D004337 1.8e-36 157.9 112 67.9
Peaxi162Scf00807g00024 Petunia axillaris HOM05D003750 ORTHO05D004337 1.8e-36 157.9 119 63.9
ClCG02G018380 Citrullus lanatus HOM05D003750 ORTHO05D004337 4.0e-36 156.8 104 69.2
Rhsim06G0118400 Rhododendron simsii HOM05D003750 ORTHO05D004337 4.0e-36 156.8 165 51.5
BcaNung06740 Brassica carinata HOM05D003750 ORTHO05D004337 5.3e-36 156.4 126 59.5
A05p03190 Brassica napus HOM05D003750 ORTHO05D004337 5.3e-36 156.4 126 59.5
C04p03840 Brassica napus HOM05D003750 ORTHO05D004337 5.3e-36 156.4 126 59.5
BolC4t22020H Brassica oleracea HOM05D003750 ORTHO05D004337 5.3e-36 156.4 126 59.5
BraA05t19309Z Brassica rapa HOM05D003750 ORTHO05D004337 5.3e-36 156.4 126 59.5
Nitab4.5_0000446g0080 Nicotiana tabacum HOM05D003750 ORTHO05D004337 9.0e-36 155.6 124 62.1
Nitab4.5_0006934g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 1.2e-35 155.2 124 62.1
BcaB06g29267 Brassica carinata HOM05D003750 ORTHO05D004337 2.0e-35 154.5 126 60.3
MELO3C019689.2 Cucumis melo HOM05D003750 ORTHO05D004337 2.0e-35 154.5 104 68.3
FAN02G2641 Fragaria x ananassa HOM05D003750 ORTHO05D004337 2.6e-35 154.1 115 65.2
Sed0014259 Sechium edule HOM05D003750 ORTHO05D004337 2.6e-35 154.1 109 69.7
SGA_v2.0_scaffold70G23672 Striga asiatica HOM05D003750 ORTHO05D004337 2.6e-35 154.1 126 62.7
Carub.0004s2528 Capsella rubella HOM05D003750 ORTHO05D004337 4.5e-35 153.3 120 61.7
AT2G42840 Arabidopsis thaliana HOM05D003750 ORTHO05D004337 7.6e-35 152.5 120 60.8
CsaV3_6G015810 Cucumis sativus L. HOM05D003750 ORTHO05D004337 9.9e-35 152.1 104 67.3
FAN05G3098 Fragaria x ananassa HOM05D003750 ORTHO05D004337 9.9e-35 152.1 113 66.4
PGSC0003DMG400007796 Solanum tuberosum HOM05D003750 ORTHO05D004337 9.9e-35 152.1 115 62.6
TAR624G1252 Trochodendron aralioides HOM05D002606 ORTHO05D003016 9.9e-35 152.1 133 57.9
Nitab4.5_0013539g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 1.3e-34 151.8 111 64.0
Oeu020066.1 Olea europaea HOM05D003750 ORTHO05D004337 1.7e-34 151.4 153 54.9
BcaC02g07218 Brassica carinata HOM05D003750 ORTHO05D004337 2.2e-34 151.0 119 61.3
A04p32410 Brassica napus HOM05D003750 ORTHO05D004337 2.2e-34 151.0 119 61.3
C04p69930 Brassica napus HOM05D003750 ORTHO05D004337 2.2e-34 151.0 119 61.3
BolC4t28493H Brassica oleracea HOM05D003750 ORTHO05D004337 2.2e-34 151.0 119 61.3
BraA04t18694Z Brassica rapa HOM05D003750 ORTHO05D004337 2.2e-34 151.0 119 61.3
CARHR137920 Cardamine hirsuta HOM05D003750 ORTHO05D004337 2.2e-34 151.0 120 60.8
CAN.G164.22 Capsicum annuum HOM05D003750 ORTHO05D004337 2.9e-34 150.6 104 64.4
Thhalv10016927m.g Eutrema salsugineum HOM05D003750 ORTHO05D004337 2.9e-34 150.6 143 55.9
Solyc12g011010.2 Solanum lycopersicum HOM05D003750 ORTHO05D004337 2.9e-34 150.6 115 63.5
Sp4g24960 Schrenkiella parvula HOM05D003750 ORTHO05D004337 3.8e-34 150.2 120 60.0
Dinv12695 Davidia involucrata HOM05D003750 ORTHO05D004337 4.9e-34 149.8 105 65.7
Nitab4.5_0001675g0060 Nicotiana tabacum HOM05D003750 ORTHO05D004337 4.9e-34 149.8 111 62.2
MSTRG.15053 Avicennia marina HOM05D003750 ORTHO05D004337 6.4e-34 149.4 110 65.5
RcHm_v2.0_Chr2g0151161 Rosa chinensis HOM05D003750 ORTHO05D004337 6.4e-34 149.4 135 57.8
Sed0013297 Sechium edule HOM05D003750 ORTHO05D004337 8.4e-34 149.1 143 51.0
Oeu040027.1 Olea europaea HOM05D003750 ORTHO05D004337 1.1e-33 148.7 101 68.3
Nn6g34390 Nelumbo nucifera HOM05D003750 ORTHO05D004337 1.9e-33 147.9 126 57.1
PGSC0003DMG400021281 Solanum tuberosum HOM05D003750 ORTHO05D004337 1.9e-33 147.9 118 61.9
CAN.G585.54 Capsicum annuum HOM05D003750 ORTHO05D004337 2.4e-33 147.5 111 60.4
arahy.Tifrunner.gnm1.ann1.ZP8MLZ Arachis hypogaea HOM05D003750 ORTHO05D004337 3.2e-33 147.1 139 51.8
TPR.G16759 Trifolium pratense HOM05D003750 ORTHO05D004337 3.2e-33 147.1 101 68.3
Solyc10g007800.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 4.2e-33 146.7 110 64.5
Sopen10g003700 Solanum pennellii HOM05D003750 ORTHO05D004337 4.2e-33 146.7 110 64.5
FvH4_6g38100 Fragaria vesca HOM05D003750 ORTHO05D004337 5.4e-33 146.4 111 64.9
FAN14G5523 Fragaria x ananassa HOM05D003750 ORTHO05D004337 5.4e-33 146.4 111 64.9
ECA246G0286 Erigeron canadensis HOM05D003750 ORTHO05D004337 1.2e-32 145.2 141 53.9
Sopen07g029310 Solanum pennellii HOM05D003750 ORTHO05D004337 1.2e-32 145.2 104 62.5
PGSC0003DMG400017342 Solanum tuberosum HOM05D003750 ORTHO05D004337 1.6e-32 144.8 104 61.5
Nitab4.5_0002027g0180 Nicotiana tabacum HOM05D003750 ORTHO05D004337 2.1e-32 144.4 145 53.8
Aa31LG1G24600 Aethionema arabicum HOM05D003750 ORTHO05D004337 3.5e-32 143.7 112 61.6
Migut.M00516 Erythranthe guttata HOM05D003750 ORTHO05D004337 3.5e-32 143.7 120 56.7
AL4G41450 Arabidopsis lyrata HOM05D003750 ORTHO05D004337 4.6e-32 143.3 115 60.9
Peaxi162Scf00688g00432 Petunia axillaris HOM05D003750 ORTHO05D004337 4.6e-32 143.3 113 60.2
Solyc07g055950.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 6.0e-32 142.9 104 61.5
Migut.H02092 Erythranthe guttata HOM05D003750 ORTHO05D004337 7.9e-32 142.5 122 57.4
Sopen12g006370 Solanum pennellii HOM05D003750 ORTHO05D004337 1.3e-31 141.7 116 61.2
arahy.Tifrunner.gnm1.ann1.N94NTJ Arachis hypogaea HOM05D003750 ORTHO05D004337 1.8e-31 141.4 102 58.8
Nitab4.5_0001402g0030 Nicotiana tabacum HOM05D003750 ORTHO05D004337 6.7e-31 139.4 128 56.2
unitig_46.g18277 Utricularia gibba HOM05D003750 ORTHO05D004337 1.1e-30 138.7 147 47.6
Nn3g20965 Nelumbo nucifera HOM05D003750 ORTHO05D004337 1.5e-30 138.3 122 57.4
CAN.G1191.4 Capsicum annuum HOM05D003750 ORTHO05D004337 2.5e-30 137.5 95 65.3
Lsat_1_v5_gn_4_26620 Lactuca sativa HOM05D003750 ORTHO05D004337 3.3e-30 137.1 130 53.8
SalBow7G1469 Salvia bowleyana HOM05D003750 ORTHO05D004337 7.4e-30 136.0 120 54.2
unitig_747.g21612 Utricularia gibba HOM05D003750 ORTHO05D004337 7.4e-30 136.0 128 53.9
Aqoxy4G00176 Aquilegia oxysepala HOM05D003750 ORTHO05D004337 1.6e-29 134.8 104 63.5
Os01g0726700 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 1.6e-29 134.8 137 54.0
Zm00001eb154370 Zea mays HOM05D003750 ORTHO05D004337 2.8e-29 134.0 147 48.3
DCAR_009794 Daucus carota HOM05D003750 ORTHO05D004337 4.8e-29 133.3 126 60.3
unitig_899.g15337 Utricularia gibba HOM05D003750 ORTHO05D004337 8.1e-29 132.5 128 50.8
MSTRG.6755 Avicennia marina HOM05D003750 ORTHO05D004337 1.1e-28 132.1 118 57.6
Peaxi162Scf00035g00302 Petunia axillaris HOM05D003750 ORTHO05D004337 2.4e-28 131.0 102 59.8
SalBow7G0202 Salvia bowleyana HOM05D003750 ORTHO05D004337 2.4e-28 131.0 116 56.9
Ca_06287_v3 Cicer arietinum L. HOM05D003750 ORTHO05D004337 3.1e-28 130.6 87 70.1
unitig_62.g23108 Utricularia gibba HOM05D003750 ORTHO05D004337 9.0e-28 129.0 136 45.6
MBI07_g30204_MAGBIO Magnolia biondii HOM05D003750 ORTHO05D004337 1.5e-27 128.3 135 53.3
unitig_37.g12854 Utricularia gibba HOM05D003750 ORTHO05D004337 1.5e-27 128.3 138 48.6
ECA234G0795 Erigeron canadensis HOM05D001021 ORTHO05D000894 2.0e-27 127.9 122 56.6
PSO675G0845 Papaver somniferum HOM05D003750 ORTHO05D004337 4.5e-27 126.7 114 55.3
PSO541G0678 Papaver somniferum HOM05D003750 ORTHO05D004337 5.8e-27 126.3 114 55.3
unitig_85.g27387 Utricularia gibba HOM05D003750 ORTHO05D004337 7.6e-27 125.9 108 54.6
MBI06_g20684_MAGBIO Magnolia biondii HOM05D003750 ORTHO05D004337 1.3e-26 125.2 129 50.4
CDE09G1130 Ceratophyllum demersum HOM05D003750 ORTHO05D004337 1.7e-26 124.8 117 56.4
DCAR_016898 Daucus carota HOM05D003750 ORTHO05D004337 1.7e-26 124.8 109 63.3
HanXRQChr17g0565481 Helianthus annuus HOM05D003750 ORTHO05D004337 1.7e-26 124.8 109 56.9
CDE02G2915 Ceratophyllum demersum HOM05D003750 ORTHO05D004337 3.8e-26 123.6 109 55.0
HanXRQChr17g0565411 Helianthus annuus HOM05D003750 ORTHO05D004337 4.9e-26 123.2 110 56.4
HanXRQChr17g0565191 Helianthus annuus HOM05D003750 ORTHO05D004337 6.5e-26 122.9 110 56.4
HanXRQChr17g0565441 Helianthus annuus HOM05D003750 ORTHO05D004337 6.5e-26 122.9 110 56.4
HanXRQChr17g0565471 Helianthus annuus HOM05D003750 ORTHO05D004337 6.5e-26 122.9 110 56.4
DCAR_021309 Daucus carota HOM05D003750 ORTHO05D004337 8.4e-26 122.5 116 57.8
AUR62015148 Chenopodium quinoa HOM05D003750 ORTHO05D004337 1.1e-25 122.1 103 51.5
Eucgr.A01963 Eucalyptus grandis HOM05D003750 ORTHO05D004337 2.5e-25 120.9 128 54.7
Ah.01g013400 Amaranthus hybridus HOM05D003750 ORTHO05D004337 9.3e-25 119.0 103 51.5
ATR0737G120 Amborella trichopoda HOM05D003750 ORTHO05D004337 2.1e-24 117.9 103 56.3
Glyma.02G280550 Glycine max HOM05D003750 ORTHO05D004337 3.5e-24 117.1 123 52.8
Sc15g0002430 Simmondsia chinensis HOM05D003750 ORTHO05D004337 6.0e-24 116.3 108 51.9
HPP92_009096 Vanilla planifolia HOM05D003750 ORTHO05D004337 6.0e-24 116.3 114 52.6
EL10Ac9g22858 Beta vulgaris HOM05D003750 ORTHO05D004337 3.9e-23 113.6 101 48.5
Ah.01g001950 Amaranthus hybridus HOM05D003750 ORTHO05D004337 1.5e-22 111.7 110 47.3
AUR62017604 Chenopodium quinoa HOM05D003750 ORTHO05D004337 2.5e-22 110.9 90 50.0
Hund08216 Selenicereus undatus HOM05D003750 ORTHO05D004337 2.5e-22 110.9 107 51.4
Zm00001eb239390 Zea mays HOM05D003750 ORTHO05D004337 6.2e-21 106.3 119 47.1
HanXRQChr01g0028591 Helianthus annuus HOM05D003750 ORTHO05D004337 6.9e-20 102.8 136 45.6
Zm00001eb278420 Zea mays HOM05D003750 ORTHO05D004337 8.4e-18 95.9 124 45.2
Zm00001eb120700 Zea mays HOM05D003750 ORTHO05D004337 1.8e-15 88.2 118 46.6
TPR.G40574 Trifolium pratense HOM05D003750 ORTHO05D004337 5.1e-15 86.7 46 73.9
Zm00001eb384740 Zea mays HOM05D003750 ORTHO05D004337 1.1e-14 85.5 109 45.0
SEGI_25228 Sequoiadendron giganteum HOM05D003750 ORTHO05D004337 1.6e-13 81.6 108 42.6
Zm00001eb277660 Zea mays HOM05D003750 ORTHO05D004337 1.6e-13 81.6 108 45.4
Os02g0230300 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 1.8e-12 78.2 69 55.1
Os06g0553200 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 2.6e-11 74.3 116 37.9
Pp3c4_16960 Physcomitrium patens HOM05D003750 ORTHO05D004337 1.4e-09 68.6 114 39.5
SEGI_24140 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 2.0e-06 58.2 106 32.1
AagrBONN_evm.TU.Sc2ySwM_228.4867 Anthoceros agrestis HOM05D003750 ORTHO05D004337 5.7e-06 56.6 113 31.9
Pp3c11_23110 Physcomitrium patens HOM05D003750 ORTHO05D004337 5.7e-06 56.6 109 31.2
Rhsim06G0118300 Rhododendron simsii HOM05D003750 ORTHO05D004337 7.4e-06 56.2 53 56.6


User provided reference genes

Program Settings