Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014450.2 Cucumis melo HOM05D004117 ORTHO05D004520 1.9e-116 422.5 222 100.0
CsaV3_6G037880 Cucumis sativus L. HOM05D004117 ORTHO05D004520 5.9e-81 304.7 233 75.1
ClCG09G020800 Citrullus lanatus HOM05D004117 ORTHO05D004520 2.6e-76 289.3 162 92.0
Sed0017214 Sechium edule HOM05D004117 ORTHO05D004520 7.2e-71 271.2 168 83.3
Dinv11422 Davidia involucrata HOM05D004117 ORTHO05D004520 4.4e-60 235.3 205 63.4
Manes.02G087500 Manihot esculenta HOM05D004117 ORTHO05D004520 1.7e-59 233.4 165 73.3
Dinv03089 Davidia involucrata HOM05D004117 ORTHO05D004520 2.2e-59 233.0 164 73.2
Nn3g21103 Nelumbo nucifera HOM05D004117 ORTHO05D004520 8.3e-59 231.1 208 62.5
Sc21g0004310 Simmondsia chinensis HOM05D004117 ORTHO05D004520 8.3e-59 231.1 206 62.6
Duzib264G0691 Durio zibethinus HOM05D004117 ORTHO05D004520 1.8e-58 229.9 206 62.1
Thecc.01G156100 Theobroma cacao HOM05D004117 ORTHO05D004520 1.8e-58 229.9 206 62.1
arahy.Tifrunner.gnm1.ann1.A5IPPM Arachis hypogaea HOM05D004117 ORTHO05D004520 3.1e-58 229.2 163 71.8
Gohir.D04G039266 Gossypium hirsutum HOM05D004117 ORTHO05D004520 4.1e-58 228.8 163 73.0
Gorai.012G044300 Gossypium raimondii HOM05D004117 ORTHO05D004520 4.1e-58 228.8 163 73.0
A08p35950 Brassica napus HOM05D004117 ORTHO05D004520 5.4e-58 228.4 165 71.5
BolC8t47054H Brassica oleracea HOM05D004117 ORTHO05D004520 5.4e-58 228.4 167 72.5
Potri.006G278700 Populus trichocarpa HOM05D004117 ORTHO05D004520 5.4e-58 228.4 206 61.7
BcaB03g13416 Brassica carinata HOM05D004117 ORTHO05D004520 7.0e-58 228.0 165 71.5
Ah.01g016090 Amaranthus hybridus HOM05D004117 ORTHO05D004520 9.2e-58 227.6 163 69.9
Duzib147G1030 Durio zibethinus HOM05D004117 ORTHO05D004520 9.2e-58 227.6 230 59.1
BraA08t35503Z Brassica rapa HOM05D004117 ORTHO05D004520 1.6e-57 226.9 165 70.9
EL10Ac9g21032 Beta vulgaris HOM05D004117 ORTHO05D004520 2.0e-57 226.5 165 67.9
Actinidia11177 Actinidia chinensis HOM05D004117 ORTHO05D004520 2.7e-57 226.1 206 61.2
Aqoxy1G01993 Aquilegia oxysepala HOM05D004117 ORTHO05D004520 3.5e-57 225.7 166 71.1
Migut.M00208 Erythranthe guttata HOM05D004117 ORTHO05D004520 3.5e-57 225.7 164 72.0
Nitab4.5_0005259g0030 Nicotiana tabacum HOM05D004117 ORTHO05D004520 3.5e-57 225.7 160 73.8
CSS0026162 Camellia sinensis var. sinensis HOM05D004117 ORTHO05D004520 4.5e-57 225.3 216 62.0
Phvul.006G038200 Phaseolus vulgaris HOM05D004117 ORTHO05D004520 7.7e-57 224.6 164 70.7
QL08p042883 Quercus lobata HOM05D004117 ORTHO05D004520 1.7e-56 223.4 165 71.5
SGA_v2.0_scaffold46G17443 Striga asiatica HOM05D004117 ORTHO05D004520 1.7e-56 223.4 164 70.7
BcaC07g36811 Brassica carinata HOM05D004117 ORTHO05D004520 2.3e-56 223.0 167 71.9
C08p02610 Brassica napus HOM05D004117 ORTHO05D004520 2.3e-56 223.0 167 71.9
CANSAT64G1854 Cannabis sativa HOM05D004117 ORTHO05D004520 2.3e-56 223.0 216 62.0
Gohir.D11G064000 Gossypium hirsutum HOM05D004117 ORTHO05D004520 3.8e-56 222.2 209 60.8
Nn6g34497 Nelumbo nucifera HOM05D004117 ORTHO05D004520 3.8e-56 222.2 167 69.5
Gohir.A11G059900 Gossypium hirsutum HOM05D004117 ORTHO05D004520 5.0e-56 221.9 209 60.3
Eucgr.A01947 Eucalyptus grandis HOM05D004117 ORTHO05D004520 6.6e-56 221.5 166 69.9
Peaxi162Scf00154g01022 Petunia axillaris HOM05D004117 ORTHO05D004520 6.6e-56 221.5 157 72.0
Peaxi162Scf00807g00047 Petunia axillaris HOM05D004117 ORTHO05D004520 6.6e-56 221.5 158 74.7
VMungo0540G1454 Vigna mungo HOM05D004117 ORTHO05D004520 6.6e-56 221.5 164 69.5
arahy.Tifrunner.gnm1.ann1.X0GQC6 Arachis hypogaea HOM05D004117 ORTHO05D004520 8.6e-56 221.1 157 73.2
CiPaw.04G134900 Carya illinoinensis HOM05D004117 ORTHO05D004520 8.6e-56 221.1 216 61.6
Medtr8g016090 Medicago truncatula HOM05D004117 ORTHO05D004520 8.6e-56 221.1 164 70.7
Sc12g0003810 Simmondsia chinensis HOM05D004117 ORTHO05D004520 8.6e-56 221.1 230 53.5
GSVIVG01020780001 Vitis vinifera HOM05D004117 ORTHO05D004520 8.6e-56 221.1 172 68.6
Ciclev10018149m.g Citrus clementina HOM05D004117 ORTHO05D004520 1.1e-55 220.7 158 73.4
Gorai.007G069200 Gossypium raimondii HOM05D004117 ORTHO05D004520 1.1e-55 220.7 209 60.3
Sopen07g029060 Solanum pennellii HOM05D004117 ORTHO05D004520 1.1e-55 220.7 216 61.1
Lj6g0002139 Lotus japonicus HOM05D004117 ORTHO05D004520 1.5e-55 220.3 215 59.5
Thhalv10007752m.g Eutrema salsugineum HOM05D004117 ORTHO05D004520 1.9e-55 219.9 165 69.1
CAN.G486.15 Capsicum annuum HOM05D004117 ORTHO05D004520 3.3e-55 219.2 164 68.3
CARHR006080 Cardamine hirsuta HOM05D004117 ORTHO05D004520 3.3e-55 219.2 168 69.6
Hma1.2p1_0178F.1_g078380 Hydrangea macrophylla HOM05D004117 ORTHO05D004520 3.3e-55 219.2 157 74.5
PGR042G1715 Punica granatum HOM05D004117 ORTHO05D004520 4.3e-55 218.8 165 69.1
HanXRQChr12g0367511 Helianthus annuus HOM05D004117 ORTHO05D004520 5.6e-55 218.4 163 67.5
Sp1g05230 Schrenkiella parvula HOM05D004117 ORTHO05D004520 5.6e-55 218.4 165 68.5
DCAR_010149 Daucus carota HOM05D004117 ORTHO05D004520 7.3e-55 218.0 188 63.3
Prupe.3G108900 Prunus persica HOM05D004117 ORTHO05D004520 7.3e-55 218.0 220 60.9
Ah.01g004740 Amaranthus hybridus HOM05D004117 ORTHO05D004520 9.5e-55 217.6 157 70.1
BraA10t42778Z Brassica rapa HOM05D004117 ORTHO05D004520 9.5e-55 217.6 167 69.5
FvH4_6g27881 Fragaria vesca HOM05D004117 ORTHO05D004520 9.5e-55 217.6 165 70.3
TPR.G22233 Trifolium pratense HOM05D004117 ORTHO05D004520 9.5e-55 217.6 215 60.0
Gohir.A05G376700 Gossypium hirsutum HOM05D004117 ORTHO05D004520 1.2e-54 217.2 228 57.5
Lalb_Chr10g0106881 Lupinus albus HOM05D004117 ORTHO05D004520 1.2e-54 217.2 165 67.9
BolC5t29244H Brassica oleracea HOM05D004117 ORTHO05D004520 1.6e-54 216.9 165 68.5
RcHm_v2.0_Chr2g0131361 Rosa chinensis HOM05D004117 ORTHO05D004520 1.6e-54 216.9 165 70.3
Nitab4.5_0003479g0010 Nicotiana tabacum HOM05D004117 ORTHO05D004520 2.1e-54 216.5 162 71.6
HanXRQChr01g0028621 Helianthus annuus HOM05D004117 ORTHO05D004520 2.8e-54 216.1 167 70.1
Lj1C629G7 Lonicera japonica HOM05D004117 ORTHO05D004520 2.8e-54 216.1 158 72.8
Sopen12g006350 Solanum pennellii HOM05D004117 ORTHO05D004520 2.8e-54 216.1 207 58.9
ECA233G4030 Erigeron canadensis HOM05D004117 ORTHO05D004520 3.6e-54 215.7 164 66.5
ECA234G3208 Erigeron canadensis HOM05D004117 ORTHO05D004520 3.6e-54 215.7 168 71.4
Manes.01G129950 Manihot esculenta HOM05D004117 ORTHO05D004520 3.6e-54 215.7 214 60.3
Solyc07g055700.2 Solanum lycopersicum HOM05D004117 ORTHO05D004520 3.6e-54 215.7 216 60.6
MD09G1233800 Malus domestica HOM05D004117 ORTHO05D004520 4.7e-54 215.3 220 61.4
vmacro12418 Vaccinium macrocarpon HOM05D004117 ORTHO05D004520 4.7e-54 215.3 227 57.3
A10p05130 Brassica napus HOM05D004117 ORTHO05D004520 6.1e-54 214.9 164 68.9
THA.LOC104800830 Tarenaya hassleriana HOM05D004117 ORTHO05D004520 6.1e-54 214.9 164 69.5
Atru.chr6.3571 Acer truncatum HOM05D004117 ORTHO05D004520 8.0e-54 214.5 170 68.8
Aa31LG1G7530 Aethionema arabicum HOM05D004117 ORTHO05D004520 1.0e-53 214.2 199 62.8
AL1G16480 Arabidopsis lyrata HOM05D004117 ORTHO05D004520 1.0e-53 214.2 165 67.3
Glyma.09G101300 Glycine max HOM05D004117 ORTHO05D004520 1.8e-53 213.4 215 60.0
Glyma.18G102500 Glycine max HOM05D004117 ORTHO05D004520 1.8e-53 213.4 215 59.5
Carub.0001s0583 Capsella rubella HOM05D004117 ORTHO05D004520 2.3e-53 213.0 167 68.3
AT1G06470 Arabidopsis thaliana HOM05D004117 ORTHO05D004520 3.0e-53 212.6 165 66.7
Lalb_Chr15g0080421 Lupinus albus HOM05D004117 ORTHO05D004520 3.0e-53 212.6 216 57.9
Lsat_1_v5_gn_8_31821 Lactuca sativa HOM05D004117 ORTHO05D004520 5.2e-53 211.8 164 66.5
Psat4g191560 Pisum sativum HOM05D004117 ORTHO05D004520 5.2e-53 211.8 231 55.0
SGA_v2.0_scaffold9G04867 Striga asiatica HOM05D004117 ORTHO05D004520 5.2e-53 211.8 159 71.1
Oeu028661.1 Olea europaea HOM05D004117 ORTHO05D004520 6.8e-53 211.5 218 57.8
CAN.G803.16 Capsicum annuum HOM05D004117 ORTHO05D004520 8.9e-53 211.1 151 74.2
C05p04720 Brassica napus HOM05D004117 ORTHO05D004520 1.2e-52 210.7 165 67.9
FAN14G3113 Fragaria x ananassa HOM05D004117 ORTHO05D004520 2.0e-52 209.9 159 71.7
Nitab4.5_0000990g0060 Nicotiana tabacum HOM05D004117 ORTHO05D004520 2.0e-52 209.9 163 70.6
unitig_62.g23113 Utricularia gibba HOM05D004117 ORTHO05D004520 2.0e-52 209.9 161 67.1
Zm00001eb376680 Zea mays HOM05D004117 ORTHO05D004520 2.6e-52 209.5 164 64.0
PSO675G6070 Papaver somniferum HOM05D004117 ORTHO05D004520 4.4e-52 208.8 232 54.7
Hund00818 Selenicereus undatus HOM05D004117 ORTHO05D004520 7.5e-52 208.0 153 70.6
Zm00001eb270990 Zea mays HOM05D004117 ORTHO05D004520 7.5e-52 208.0 164 64.6
SalBow7G2879 Salvia bowleyana HOM05D004117 ORTHO05D004520 9.8e-52 207.6 159 69.2
Solyc12g010990.3 Solanum lycopersicum HOM05D004117 ORTHO05D004520 2.9e-51 206.1 159 69.2
Lsat_1_v5_gn_4_26681 Lactuca sativa HOM05D004117 ORTHO05D004520 3.7e-51 205.7 157 70.1
PSO541G2160 Papaver somniferum HOM05D004117 ORTHO05D004520 3.7e-51 205.7 230 54.3
FAN02G0254 Fragaria x ananassa HOM05D004117 ORTHO05D004520 1.8e-50 203.4 216 57.9
HPP92_009031 Vanilla planifolia HOM05D004117 ORTHO05D004520 1.6e-49 200.3 166 64.5
Migut.H02117 Erythranthe guttata HOM05D004117 ORTHO05D004520 2.0e-49 199.9 158 67.7
HPP92_000571 Vanilla planifolia HOM05D004117 ORTHO05D004520 2.0e-49 199.9 208 53.4
arahy.Tifrunner.gnm1.ann1.S8R0TP Arachis hypogaea HOM05D004117 ORTHO05D004520 4.6e-49 198.7 195 59.5
MD17G1230200 Malus domestica HOM05D004117 ORTHO05D004520 5.9e-49 198.4 220 57.3
ATR0857G001 Amborella trichopoda HOM05D004117 ORTHO05D004520 1.0e-48 197.6 160 66.2
arahy.Tifrunner.gnm1.ann1.EL27YX Arachis hypogaea HOM05D004117 ORTHO05D004520 1.7e-48 196.8 159 67.3
Oeu032129.1 Olea europaea HOM05D004117 ORTHO05D004520 5.0e-48 195.3 129 76.7
Os01g0749900 Oryza sativa ssp. japonica HOM05D004117 ORTHO05D004520 1.5e-47 193.7 166 63.3
Zm00001eb370980 Zea mays HOM05D004117 ORTHO05D004520 3.3e-47 192.6 168 62.5
Zm00001eb153320 Zea mays HOM05D004117 ORTHO05D004520 5.6e-47 191.8 214 53.7
FAN05G5128 Fragaria x ananassa HOM05D004117 ORTHO05D004520 7.3e-47 191.4 150 68.7
Sabra06G0216200 Salix brachista HOM05D004117 ORTHO05D004520 3.6e-46 189.1 160 64.4
Hund07729 Selenicereus undatus HOM05D004117 ORTHO05D004520 3.6e-46 189.1 140 71.4
BcaB02g06797 Brassica carinata HOM05D004117 ORTHO05D004520 1.2e-44 184.1 157 64.3
SalBow8G2638 Salvia bowleyana HOM05D004117 ORTHO05D004520 2.4e-42 176.4 127 72.4
SalBow1G6942 Salvia bowleyana HOM05D004117 ORTHO05D004520 4.1e-42 175.6 127 72.4
SalBow6G2076 Salvia bowleyana HOM05D004117 ORTHO05D004520 4.1e-42 175.6 127 72.4
Pp3c3_5740 Physcomitrium patens HOM05D004117 ORTHO05D004520 1.3e-40 170.6 163 51.5
Haze_13436 Corylus avellana HOM05D004117 ORTHO05D004520 2.5e-39 166.4 216 52.8
Mapoly0038s0060 Marchantia polymorpha HOM05D004117 ORTHO05D004520 6.8e-37 158.3 161 54.0
Pp3c2_29630 Physcomitrium patens HOM05D004117 ORTHO05D004520 2.2e-35 153.3 176 46.6
SalBow1G0209 Salvia bowleyana HOM05D004117 ORTHO05D004520 2.3e-32 143.3 98 77.6
arahy.Tifrunner.gnm1.ann1.E1YPH0 Arachis hypogaea HOM05D004117 ORTHO05D004520 4.3e-31 139.0 165 52.7
Rhsim06G0124300 Rhododendron simsii HOM05D004117 ORTHO05D004520 1.6e-30 137.1 97 75.3
COL.COLO4_33652 Corchorus olitorius HOM05D004117 ORTHO05D004520 2.8e-30 136.3 97 77.3
SMO358G0570 Selaginella moellendorffii HOM05D004117 ORTHO05D004520 3.6e-30 136.0 180 44.4
MBI06_g18691_MAGBIO Magnolia biondii HOM05D004117 ORTHO05D004520 8.1e-30 134.8 162 54.3
Ciclev10014464m.g Citrus clementina HOM05D000038 ORTHO05D000423 6.8e-29 131.7 102 69.6
FAN09G0194 Fragaria x ananassa HOM05D004117 ORTHO05D004520 1.3e-27 127.5 97 73.2
AUR62031790 Chenopodium quinoa HOM05D004117 ORTHO05D004520 2.2e-27 126.7 96 67.7
GSVIVG01020778001 Vitis vinifera HOM05D000038 ORTHO05D000423 2.2e-27 126.7 114 64.9
CDE09G0584 Ceratophyllum demersum HOM05D004117 ORTHO05D004520 2.9e-27 126.3 91 68.1
BcaC07g36812 Brassica carinata HOM05D004117 ORTHO05D004520 1.4e-26 124.0 172 50.0
Lsat_1_v5_gn_3_102840 Lactuca sativa HOM05D001936 ORTHO05D004520 1.7e-19 100.5 77 68.8
PGSC0003DMG400007799 Solanum tuberosum HOM05D004117 ORTHO05D004520 3.8e-19 99.4 82 61.0
Cre07.g330850 Chlamydomonas reinhardtii HOM05D004117 ORTHO05D004520 1.4e-18 97.4 168 35.7
QL08p042731 Quercus lobata HOM05D004117 ORTHO05D004520 3.6e-14 82.8 55 80.0
PRCOL_00002587 Prasinoderma coloniale HOM05D004117 ORTHO05D004520 8.1e-14 81.6 172 33.7
arahy.Tifrunner.gnm1.ann1.K0K9CW Arachis hypogaea HOM05D012221 ORTHO05D004520 1.5e-12 77.4 68 58.8
Pp3c13_2890 Physcomitrium patens HOM05D004117 ORTHO05D004520 3.4e-12 76.3 107 45.8
MCO15G049 Micromonas commoda HOM05D004117 ORTHO05D004520 7.1e-10 68.6 132 31.8
CBR_g22972 Chara braunii HOM05D000004 ORTHO05D000002 1.3e-08 64.3 157 31.2
Aa31LG10G1600 Aethionema arabicum HOM05D000068 ORTHO05D004691 2.3e-08 63.5 167 33.5
Mapoly0035s0035 Marchantia polymorpha HOM05D004117 ORTHO05D256391 2.3e-08 63.5 136 27.9
arahy.Tifrunner.gnm1.ann1.DYUH96 Arachis hypogaea HOM05D009422 ORTHO05D004520 8.7e-08 61.6 38 71.1
QL08p042825 Quercus lobata HOM05D000013 ORTHO05D000689 1.5e-07 60.8 32 81.2
PRCOL_00000399 Prasinoderma coloniale HOM05D004117 ORTHO05D004520 4.3e-07 59.3 125 30.4
Potri.001G394500 Populus trichocarpa HOM05D000753 ORTHO05D006293 1.6e-06 57.4 137 32.8
Carub.0003s1412 Capsella rubella HOM05D000753 ORTHO05D006293 2.8e-06 56.6 156 32.7
CBR_g30903 Chara braunii HOM05D000753 ORTHO05D001988 2.8e-06 56.6 139 30.9
AL3G26780 Arabidopsis lyrata HOM05D000753 ORTHO05D006293 3.6e-06 56.2 162 32.1
Sp3g12700 Schrenkiella parvula HOM05D000753 ORTHO05D006293 3.6e-06 56.2 162 33.3
BcaC09g48407 Brassica carinata HOM05D000753 ORTHO05D006293 6.2e-06 55.5 141 34.8
C01p50110 Brassica napus HOM05D000753 ORTHO05D006293 6.2e-06 55.5 141 34.8
BolC1t04964H Brassica oleracea HOM05D000753 ORTHO05D006293 6.2e-06 55.5 141 34.8
DCAR_013801 Daucus carota HOM05D000753 ORTHO05D006293 8.1e-06 55.1 151 30.5
Duzib213G0134 Durio zibethinus HOM05D000753 ORTHO05D006293 8.1e-06 55.1 148 31.1
MD05G1209500 Malus domestica HOM05D000753 ORTHO05D006293 8.1e-06 55.1 149 33.6


User provided reference genes

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