Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014446.2 Cucumis melo HOM05D004286 ORTHO05D005038 3.4e-124 448.4 231 100.0
CsaV3_6G037850 Cucumis sativus L. HOM05D004286 ORTHO05D005038 1.9e-106 389.4 273 79.9
ClCG09G020850 Citrullus lanatus HOM05D004286 ORTHO05D005038 1.1e-103 380.2 273 76.6
Sed0025216 Sechium edule HOM05D004286 ORTHO05D005038 2.4e-93 345.9 267 71.5
Sed0019287 Sechium edule HOM05D004286 ORTHO05D005038 2.3e-88 329.3 261 70.1
RcHm_v2.0_Chr2g0157611 Rosa chinensis HOM05D004286 ORTHO05D005038 1.4e-80 303.5 273 62.3
GSVIVG01030535001 Vitis vinifera HOM05D004286 ORTHO05D005038 4.0e-80 302.0 273 61.5
Actinidia10792 Actinidia chinensis HOM05D004286 ORTHO05D005038 3.4e-79 298.9 273 61.5
Dinv08705 Davidia involucrata HOM05D004286 ORTHO05D005038 9.8e-79 297.4 274 62.8
FvH4_6g41790 Fragaria vesca HOM05D004286 ORTHO05D005038 2.8e-78 295.8 273 61.5
FAN14G2365 Fragaria x ananassa HOM05D004286 ORTHO05D005038 2.8e-78 295.8 273 61.5
Dinv05857 Davidia involucrata HOM05D004286 ORTHO05D005038 3.1e-77 292.4 275 60.4
MD09G1117100 Malus domestica HOM05D004286 ORTHO05D005038 2.0e-76 289.7 273 60.8
Actinidia37025 Actinidia chinensis HOM05D004286 ORTHO05D005038 2.7e-76 289.3 273 60.8
FAN05G2579 Fragaria x ananassa HOM05D004286 ORTHO05D005038 7.8e-76 287.7 273 60.8
CSS0002248 Camellia sinensis var. sinensis HOM05D004286 ORTHO05D005038 2.3e-75 286.2 273 60.1
CSS0046465 Camellia sinensis var. sinensis HOM05D004286 ORTHO05D005038 2.3e-75 286.2 273 60.1
Prupe.3G206700 Prunus persica HOM05D004286 ORTHO05D005038 2.9e-75 285.8 274 60.2
CiPaw.04G192800 Carya illinoinensis HOM05D004286 ORTHO05D005038 5.0e-75 285.0 273 61.2
MD17G1108600 Malus domestica HOM05D004286 ORTHO05D005038 6.6e-75 284.6 273 58.2
FAN09G0399 Fragaria x ananassa HOM05D004286 ORTHO05D005038 8.6e-75 284.3 290 56.9
CSS0020066 Camellia sinensis var. sinensis HOM05D004286 ORTHO05D005038 2.5e-74 282.7 273 59.0
QL08p029923 Quercus lobata HOM05D004286 ORTHO05D005038 4.3e-74 282.0 273 59.3
CSS0008732 Camellia sinensis var. sinensis HOM05D004286 ORTHO05D005038 9.5e-74 280.8 273 58.6
CANSAT64G2404 Cannabis sativa HOM05D004286 ORTHO05D005038 1.6e-73 280.0 273 58.2
Hma1.2p1_0133F.1_g060820 Hydrangea macrophylla HOM05D004286 ORTHO05D005038 1.6e-73 280.0 273 57.9
Manes.12G056500 Manihot esculenta HOM05D004286 ORTHO05D005038 1.6e-73 280.0 273 57.9
Hma1.2p1_0405F.1_g145600 Hydrangea macrophylla HOM05D004286 ORTHO05D005038 2.1e-73 279.6 273 59.0
vmacro09373 Vaccinium macrocarpon HOM05D004286 ORTHO05D005038 6.1e-73 278.1 274 59.5
FAN02G2924 Fragaria x ananassa HOM05D004286 ORTHO05D005038 1.0e-72 277.3 321 52.6
CiPaw.03G274200 Carya illinoinensis HOM05D004286 ORTHO05D005038 1.4e-72 276.9 273 60.1
Cfa014297 Carpinus fangiana HOM05D004286 ORTHO05D005038 4.0e-72 275.4 275 60.0
Duzib138G1090 Durio zibethinus HOM05D004286 ORTHO05D005038 5.2e-72 275.0 275 60.0
TWI18G0815 Tripterygium wilfordii HOM05D004286 ORTHO05D005038 2.0e-71 273.1 275 58.9
Glyma.02G266300 Glycine max HOM05D004286 ORTHO05D005038 9.8e-71 270.8 273 55.3
Glyma.14G051200 Glycine max HOM05D004286 ORTHO05D005038 2.2e-70 269.6 273 54.6
VMungo0647G2550 Vigna mungo HOM05D004286 ORTHO05D005038 2.2e-70 269.6 273 55.3
Phvul.008G215800 Phaseolus vulgaris HOM05D004286 ORTHO05D005038 2.9e-70 269.2 273 56.4
Thecc.01G185000 Theobroma cacao HOM05D004286 ORTHO05D005038 1.1e-69 267.3 273 58.6
Duzib133G0743 Durio zibethinus HOM05D004286 ORTHO05D005038 1.9e-69 266.5 275 58.9
TWI36G0011 Tripterygium wilfordii HOM05D004286 ORTHO05D005038 1.9e-69 266.5 273 56.4
TAR629G1098 Trochodendron aralioides HOM05D004286 ORTHO05D005038 3.2e-69 265.8 273 57.5
COL.COLO4_32785 Corchorus olitorius HOM05D004286 ORTHO05D005038 4.1e-69 265.4 277 58.5
Gohir.A11G151900 Gossypium hirsutum HOM05D004286 ORTHO05D005038 1.2e-68 263.8 277 57.4
Sabra14G0122200 Salix brachista HOM05D004286 ORTHO05D005038 2.0e-68 263.1 273 56.8
Gorai.007G169300 Gossypium raimondii HOM05D004286 ORTHO05D005038 3.5e-68 262.3 277 57.0
Gohir.D11G158900 Gossypium hirsutum HOM05D004286 ORTHO05D005038 4.6e-68 261.9 277 57.0
Nn1g07346 Nelumbo nucifera HOM05D004286 ORTHO05D005038 6.0e-68 261.5 244 59.0
arahy.Tifrunner.gnm1.ann1.0TG0LH Arachis hypogaea HOM05D004286 ORTHO05D005038 1.0e-67 260.8 274 56.9
arahy.Tifrunner.gnm1.ann1.6KAU0S Arachis hypogaea HOM05D004286 ORTHO05D005038 1.0e-67 260.8 274 56.9
Manes.13G064900 Manihot esculenta HOM05D004286 ORTHO05D005038 1.0e-67 260.8 271 56.5
Nn1g03342 Nelumbo nucifera HOM05D004286 ORTHO05D005038 8.6e-67 257.7 265 56.6
TAR720G0001 Trochodendron aralioides HOM05D004286 ORTHO05D005038 8.6e-67 257.7 265 54.3
PGR042G3878 Punica granatum HOM05D004286 ORTHO05D005038 1.5e-66 256.9 273 53.5
Potri.014G160500 Populus trichocarpa HOM05D004286 ORTHO05D005038 2.5e-66 256.1 273 55.7
Rhsim04G0046600 Rhododendron simsii HOM05D004286 ORTHO05D005038 4.3e-66 255.4 325 48.9
Aqoxy1G04129 Aquilegia oxysepala HOM05D004286 ORTHO05D005038 3.6e-65 252.3 265 55.8
Lalb_Chr17g0347121 Lupinus albus HOM05D004286 ORTHO05D005038 8.0e-65 251.1 274 55.8
Eucgr.K00729 Eucalyptus grandis HOM05D004286 ORTHO05D005038 1.8e-64 250.0 273 53.8
Lalb_Chr04g0250221 Lupinus albus HOM05D004286 ORTHO05D005038 4.0e-64 248.8 273 54.9
Lalb_Chr10g0105501 Lupinus albus HOM05D004286 ORTHO05D005038 6.8e-64 248.1 272 55.1
Hund02277 Selenicereus undatus HOM05D004286 ORTHO05D005038 6.8e-64 248.1 260 55.8
Medtr5g084720 Medicago truncatula HOM05D004286 ORTHO05D005038 1.2e-63 247.3 273 54.9
Psat2g027200 Pisum sativum HOM05D004286 ORTHO05D005038 1.5e-63 246.9 279 54.1
TPR.G17665 Trifolium pratense HOM05D004286 ORTHO05D005038 9.8e-63 244.2 270 54.1
Oeu036755.1 Olea europaea HOM05D004286 ORTHO05D005038 1.7e-62 243.4 274 54.4
Nitab4.5_0008424g0030 Nicotiana tabacum HOM05D004286 ORTHO05D005038 6.4e-62 241.5 275 54.9
Gohir.D07G090500 Gossypium hirsutum HOM05D004286 ORTHO05D005038 1.1e-61 240.7 278 55.4
Nitab4.5_0000622g0120 Nicotiana tabacum HOM05D004286 ORTHO05D005038 1.4e-61 240.4 273 54.6
Peaxi162Scf00921g00259 Petunia axillaris HOM05D004286 ORTHO05D005038 1.9e-61 240.0 274 55.1
THA.LOC104808865 Tarenaya hassleriana HOM05D004286 ORTHO05D005038 1.9e-61 240.0 274 53.6
Haze_12745 Corylus avellana HOM05D004286 ORTHO05D005038 5.4e-61 238.4 273 54.9
Gorai.001G097000 Gossypium raimondii HOM05D004286 ORTHO05D005038 7.0e-61 238.0 278 55.0
Peaxi162Scf00047g02033 Petunia axillaris HOM05D004286 ORTHO05D005038 1.2e-60 237.3 272 54.0
Nitab4.5_0011973g0010 Nicotiana tabacum HOM05D004286 ORTHO05D005038 1.6e-60 236.9 274 52.9
MBI19_g29436_MAGBIO Magnolia biondii HOM05D004286 ORTHO05D005038 2.1e-60 236.5 257 52.9
Gohir.A07G085000 Gossypium hirsutum HOM05D004286 ORTHO05D005038 4.6e-60 235.3 278 54.3
Nitab4.5_0000130g0020 Nicotiana tabacum HOM05D004286 ORTHO05D005038 6.0e-60 235.0 274 52.9
Solyc12g005990.2 Solanum lycopersicum HOM05D004286 ORTHO05D005038 6.0e-60 235.0 272 54.4
PGSC0003DMG400013901 Solanum tuberosum HOM05D004286 ORTHO05D005038 7.8e-60 234.6 276 54.0
AUR62017569 Chenopodium quinoa HOM05D004286 ORTHO05D005038 1.0e-59 234.2 254 54.7
AUR62015106 Chenopodium quinoa HOM05D004286 ORTHO05D005038 1.7e-59 233.4 275 50.2
Cpa.g.sc132.48 Carica papaya HOM05D004286 ORTHO05D005038 2.3e-59 233.0 300 48.0
Ca_06046_v3 Cicer arietinum L. HOM05D004286 ORTHO05D005038 2.3e-59 233.0 275 52.4
LjContig00029g0014825 Lotus japonicus HOM05D004286 ORTHO05D005038 2.3e-59 233.0 244 54.5
Ciclev10016185m.g Citrus clementina HOM05D004286 ORTHO05D005038 3.0e-59 232.6 284 54.9
Sc06g0009720 Simmondsia chinensis HOM05D004286 ORTHO05D005038 1.5e-58 230.3 274 53.6
EL10Ac9g22806 Beta vulgaris HOM05D004286 ORTHO05D005038 1.9e-58 229.9 252 52.8
Sopen12g001960 Solanum pennellii HOM05D004286 ORTHO05D005038 3.3e-58 229.2 294 50.3
CAN.G931.5 Capsicum annuum HOM05D004286 ORTHO05D005038 1.6e-57 226.9 262 54.2
Gorai.001G218300 Gossypium raimondii HOM05D004286 ORTHO05D005038 2.1e-57 226.5 274 52.9
ATR1101G050 Amborella trichopoda HOM05D004286 ORTHO05D005038 3.6e-57 225.7 275 51.3
Gohir.D07G195100 Gossypium hirsutum HOM05D004286 ORTHO05D005038 3.6e-57 225.7 274 52.9
PSO675G0968 Papaver somniferum HOM05D004286 ORTHO05D005038 6.2e-57 224.9 249 54.6
Sopen07g024750 Solanum pennellii HOM05D004286 ORTHO05D005038 6.2e-57 224.9 259 52.1
MSTRG.14122 Avicennia marina HOM05D004286 ORTHO05D005038 8.1e-57 224.6 281 51.6
Solyc07g049410.3 Solanum lycopersicum HOM05D004286 ORTHO05D005038 1.1e-56 224.2 259 52.1
SalBow7G3654 Salvia bowleyana HOM05D004286 ORTHO05D005038 6.8e-56 221.5 278 50.0
Ah.01g001820 Amaranthus hybridus HOM05D004286 ORTHO05D005038 8.9e-56 221.1 215 54.9
Migut.H01256 Erythranthe guttata HOM05D004286 ORTHO05D005038 8.9e-56 221.1 258 51.9
PSO541G3581 Papaver somniferum HOM05D004286 ORTHO05D005038 8.9e-56 221.1 249 53.8
DCAR_019737 Daucus carota HOM05D004286 ORTHO05D005038 1.5e-55 220.3 251 53.4
SGA_v2.0_scaffold49G18364 Striga asiatica HOM05D004286 ORTHO05D005038 2.6e-55 219.5 281 50.5
BcaB08g34482 Brassica carinata HOM05D004286 ORTHO05D005038 2.9e-54 216.1 276 47.1
PGSC0003DMG400000662 Solanum tuberosum HOM05D004286 ORTHO05D005038 2.9e-54 216.1 245 52.7
SalBow1G6481 Salvia bowleyana HOM05D004286 ORTHO05D005038 1.1e-53 214.2 278 50.4
BcaC01g03195 Brassica carinata HOM05D004286 ORTHO05D005038 2.4e-53 213.0 276 47.1
Gohir.A07G188500 Gossypium hirsutum HOM05D004286 ORTHO05D005038 1.2e-52 210.7 279 50.2
Hund24189 Selenicereus undatus HOM05D004286 ORTHO05D005038 1.6e-52 210.3 265 50.2
AT2G04550 Arabidopsis thaliana HOM05D004286 ORTHO05D005038 2.7e-52 209.5 276 48.2
Lsat_1_v5_gn_5_124900 Lactuca sativa HOM05D004286 ORTHO05D005038 2.7e-52 209.5 274 50.0
AL3G42190 Arabidopsis lyrata HOM05D004286 ORTHO05D005038 7.8e-52 208.0 250 50.8
Thhalv10002646m.g Eutrema salsugineum HOM05D004286 ORTHO05D005038 1.3e-51 207.2 277 48.4
CARHR102480 Cardamine hirsuta HOM05D004286 ORTHO05D005038 2.3e-51 206.5 249 50.2
CDE04G0112 Ceratophyllum demersum HOM05D004286 ORTHO05D005038 3.0e-51 206.1 249 51.8
BcaC06g35879 Brassica carinata HOM05D004286 ORTHO05D005038 3.3e-50 202.6 247 47.4
Carub.0003s2618 Capsella rubella HOM05D004286 ORTHO05D005038 4.3e-50 202.2 278 46.8
Sp3g23330 Schrenkiella parvula HOM05D004286 ORTHO05D005038 5.6e-50 201.8 278 45.0
PGR142G1675 Punica granatum HOM05D004286 ORTHO05D005038 1.2e-49 200.7 255 49.0
Atru.chr6.3295 Acer truncatum HOM05D004286 ORTHO05D005038 2.1e-49 199.9 238 48.3
BcaB06g26820 Brassica carinata HOM05D004286 ORTHO05D005038 2.1e-49 199.9 247 48.6
Aa31sc76G40 Aethionema arabicum HOM05D004286 ORTHO05D005038 3.6e-49 199.1 244 50.4
Atru.chr6.3279 Acer truncatum HOM05D004286 ORTHO05D005038 8.1e-49 198.0 236 49.6
HanXRQChr10g0306281 Helianthus annuus HOM05D004286 ORTHO05D005038 1.4e-48 197.2 280 49.3
HanXRQChr12g0374401 Helianthus annuus HOM05D004286 ORTHO05D005038 1.4e-48 197.2 283 50.9
ECA234G1505 Erigeron canadensis HOM05D004286 ORTHO05D005038 2.4e-48 196.4 285 48.4
SalBow3G3416 Salvia bowleyana HOM05D004286 ORTHO05D005038 2.2e-46 189.9 329 42.6
A03p44390 Brassica napus HOM05D004286 ORTHO05D005038 1.6e-44 183.7 276 44.9
BolC3t17776H Brassica oleracea HOM05D004286 ORTHO05D005038 1.6e-44 183.7 276 44.9
BraA03t13569Z Brassica rapa HOM05D004286 ORTHO05D005038 1.6e-44 183.7 276 44.9
C03p55010 Brassica napus HOM05D004286 ORTHO05D005038 7.8e-44 181.4 276 43.8
Pp3c15_23940 Physcomitrium patens HOM05D004286 ORTHO05D005038 5.1e-43 178.7 251 45.0
HPP92_021917 Vanilla planifolia HOM05D000528 ORTHO05D000999 6.6e-43 178.3 245 48.2
Os06g0308100 Oryza sativa ssp. japonica HOM05D004286 ORTHO05D005038 1.1e-42 177.6 286 45.5
unitig_52.g17329 Utricularia gibba HOM05D004286 ORTHO05D005038 4.3e-42 175.6 212 52.8
Mapoly0033s0037 Marchantia polymorpha HOM05D004286 ORTHO05D005038 1.2e-41 174.1 261 44.4
A07p06680 Brassica napus HOM05D004286 ORTHO05D005038 4.7e-41 172.2 247 45.3
BolC7t41460H Brassica oleracea HOM05D004286 ORTHO05D005038 6.2e-41 171.8 247 44.9
C07p10150 Brassica napus HOM05D004286 ORTHO05D005038 8.1e-41 171.4 247 44.9
SEGI_04616 Sequoiadendron giganteum HOM05D004286 ORTHO05D005038 8.1e-41 171.4 260 44.6
Pp3c9_24360 Physcomitrium patens HOM05D004286 ORTHO05D005038 1.4e-40 170.6 252 43.7
BraA07t28459Z Brassica rapa HOM05D004286 ORTHO05D005038 1.8e-40 170.2 247 44.5
Os02g0720300 Oryza sativa ssp. japonica HOM05D004286 ORTHO05D005038 4.6e-36 155.6 275 41.1
Zm00001eb252940 Zea mays HOM05D004286 ORTHO05D005038 7.8e-36 154.8 278 41.4
TAR624G0201 Trochodendron aralioides HOM05D004286 ORTHO05D005038 2.5e-34 149.8 312 35.9
CDE07G0175 Ceratophyllum demersum HOM05D004286 ORTHO05D005038 1.1e-32 144.4 218 43.1
Lj1C785T12 Lonicera japonica HOM05D004286 ORTHO05D005038 3.1e-32 142.9 87 89.7
CBR_g21813 Chara braunii HOM05D004286 ORTHO05D005038 6.9e-32 141.7 270 39.3
TAR627G0092 Trochodendron aralioides HOM05D004286 ORTHO05D005038 1.9e-29 133.7 79 81.0
Oeu027253.1 Olea europaea HOM05D004286 ORTHO05D005038 2.4e-29 133.3 144 52.8
Oeu027254.1 Olea europaea HOM05D004286 ORTHO05D005038 3.5e-28 129.4 92 78.3
CARHR217010 Cardamine hirsuta HOM05D004286 ORTHO05D005038 6.0e-28 128.6 192 39.6
SMO118G0241 Selaginella moellendorffii HOM05D004286 ORTHO05D005038 1.3e-27 127.5 164 47.0
Lj1A785T54 Lonicera japonica HOM05D004286 ORTHO05D005038 1.1e-26 124.4 166 45.8
Thhalv10005655m.g Eutrema salsugineum HOM05D004286 ORTHO05D005038 9.6e-26 121.3 203 39.4
Zm00001eb281200 Zea mays HOM05D004286 ORTHO05D005038 4.0e-24 115.9 80 80.0
Sp7g10870 Schrenkiella parvula HOM05D004286 ORTHO05D005038 6.9e-24 115.2 200 36.5
Cre03.g193350 Chlamydomonas reinhardtii HOM05D004286 ORTHO05D005038 5.8e-23 112.1 253 34.4
AagrBONN_evm.TU.Sc2ySwM_344.1469 Anthoceros agrestis HOM05D004286 ORTHO05D005038 1.4e-21 107.5 79 67.1
Aqoxy6G01617 Aquilegia oxysepala HOM05D004286 ORTHO05D005038 1.5e-18 97.4 231 30.3
Aqoxy6G01222 Aquilegia oxysepala HOM05D004286 ORTHO05D005038 3.7e-09 66.2 40 72.5
PRCOL_00000213 Prasinoderma coloniale HOM05D001710 ORTHO05D001939 8.2e-09 65.1 167 30.5
Gohir.A10G195100 Gossypium hirsutum HOM05D005353 ORTHO05D006248 1.2e-07 61.2 35 74.3
Duzib211G0639 Durio zibethinus HOM05D004286 ORTHO05D005038 5.0e-06 55.8 32 78.1


User provided reference genes

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