Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014393.2 Cucumis melo HOM05D000358 ORTHO05D009346 4.1e-69 264.6 135 100.0
CsaV3_6G037210 Cucumis sativus L. HOM05D000358 ORTHO05D009346 1.7e-38 162.9 94 86.2
ClCG07G000330 Citrullus lanatus HOM05D000358 ORTHO05D009346 6.0e-36 154.5 124 68.5
Sed0015724 Sechium edule HOM05D000358 ORTHO05D009346 3.1e-24 115.5 93 69.9
Dinv32921 Davidia involucrata HOM05D000358 ORTHO05D002525 1.9e-18 96.3 89 59.6
Manes.05G077400 Manihot esculenta HOM05D000358 ORTHO05D009346 1.8e-16 89.7 96 55.2
Potri.005G210700 Populus trichocarpa HOM05D000358 ORTHO05D009346 1.8e-16 89.7 77 61.0
CiPaw.07G090600 Carya illinoinensis HOM05D000358 ORTHO05D009346 9.0e-16 87.4 97 52.6
Sabra05G0160900 Salix brachista HOM05D000358 ORTHO05D009346 9.0e-16 87.4 58 72.4
CANSAT25G1780 Cannabis sativa HOM05D000358 ORTHO05D009346 1.2e-15 87.0 60 73.3
MD11G1284000 Malus domestica HOM05D000358 ORTHO05D009346 1.2e-15 87.0 97 54.6
Prupe.8G239600 Prunus persica HOM05D000358 ORTHO05D009346 2.0e-15 86.3 96 56.2
TAR636G2394 Trochodendron aralioides HOM05D000358 ORTHO05D009346 4.5e-15 85.1 97 53.6
TAR375G0394 Trochodendron aralioides HOM05D000358 ORTHO05D009346 5.8e-15 84.7 96 53.1
FvH4_2g23371 Fragaria vesca HOM05D000358 ORTHO05D009346 7.6e-15 84.3 94 50.0
RcHm_v2.0_Chr6g0290831 Rosa chinensis HOM05D000358 ORTHO05D009346 1.3e-14 83.6 96 52.1
Ciclev10022514m.g Citrus clementina HOM05D000358 ORTHO05D009346 2.2e-14 82.8 106 53.8
BcaC03g16171 Brassica carinata HOM05D000358 ORTHO05D009346 6.4e-14 81.3 94 47.9
C02p39090 Brassica napus HOM05D000358 ORTHO05D009346 6.4e-14 81.3 94 47.9
BolC2t09919H Brassica oleracea HOM05D000358 ORTHO05D009346 6.4e-14 81.3 94 47.9
Gorai.007G137700 Gossypium raimondii HOM05D000358 ORTHO05D009346 6.4e-14 81.3 96 49.0
COL.COLO4_09074 Corchorus olitorius HOM05D000358 ORTHO05D009346 2.4e-13 79.3 100 50.0
Gohir.D11G128700 Gossypium hirsutum HOM05D000358 ORTHO05D009346 3.2e-13 79.0 96 49.0
QL12p021343 Quercus lobata HOM05D000358 ORTHO05D009346 3.2e-13 79.0 100 50.0
vmacro02584 Vaccinium macrocarpon HOM05D000358 ORTHO05D009346 3.2e-13 79.0 53 66.0
A02p24950 Brassica napus HOM05D000358 ORTHO05D009346 4.2e-13 78.6 88 47.7
BraA02t07485Z Brassica rapa HOM05D000358 ORTHO05D009346 4.2e-13 78.6 88 47.7
Carub.0006s3438 Capsella rubella HOM05D000358 ORTHO05D009346 5.5e-13 78.2 74 54.1
Haze_04693 Corylus avellana HOM05D000358 ORTHO05D009346 5.5e-13 78.2 97 50.5
Thecc.01G276900 Theobroma cacao HOM05D000358 ORTHO05D009346 5.5e-13 78.2 102 49.0
Hund09500 Selenicereus undatus HOM05D000358 ORTHO05D009346 7.1e-13 77.8 99 48.5
Atru.chr5.1460 Acer truncatum HOM05D000358 ORTHO05D009346 9.3e-13 77.4 55 63.6
BcaB05g23661 Brassica carinata HOM05D000358 ORTHO05D009346 9.3e-13 77.4 94 46.8
Gohir.A11G123500 Gossypium hirsutum HOM05D000358 ORTHO05D009346 9.3e-13 77.4 96 47.9
GSVIVG01001163001 Vitis vinifera HOM05D000358 ORTHO05D009346 9.3e-13 77.4 83 51.8
CSS0040373 Camellia sinensis var. sinensis HOM05D000358 ORTHO05D009346 1.2e-12 77.0 96 49.0
TWI14G1410 Tripterygium wilfordii HOM05D000358 ORTHO05D009346 1.6e-12 76.6 59 59.3
AT4G02725 Arabidopsis thaliana HOM05D000358 ORTHO05D009346 2.1e-12 76.3 94 46.8
Cpa.g.sc52.51 Carica papaya HOM05D000358 ORTHO05D009346 2.1e-12 76.3 95 49.5
BolC9t53153H Brassica oleracea HOM05D000358 ORTHO05D009346 2.7e-12 75.9 88 47.7
BcaC04g24011 Brassica carinata HOM05D000358 ORTHO05D009346 3.5e-12 75.5 88 47.7
MBI04_g20822_MAGBIO Magnolia biondii HOM05D000358 ORTHO05D009346 6.0e-12 74.7 87 49.4
AL6G50280 Arabidopsis lyrata HOM05D000358 ORTHO05D009346 7.9e-12 74.3 94 46.8
Thhalv10029025m.g Eutrema salsugineum HOM05D000358 ORTHO05D009346 7.9e-12 74.3 94 43.6
VMungo1383G1528 Vigna mungo HOM05D000358 ORTHO05D009346 7.9e-12 74.3 95 47.4
C09p02250 Brassica napus HOM05D000358 ORTHO05D009346 1.8e-11 73.2 88 46.6
ECA247G2961 Erigeron canadensis HOM05D000358 ORTHO05D009346 1.8e-11 73.2 59 57.6
Hma1.2p1_0822F.1_g224410 Hydrangea macrophylla HOM05D000358 ORTHO05D009346 1.8e-11 73.2 47 70.2
Nitab4.5_0004318g0030 Nicotiana tabacum HOM05D000358 ORTHO05D009346 1.8e-11 73.2 97 49.5
Atru.BG.13.p Acer truncatum HOM05D000358 ORTHO05D009346 2.3e-11 72.8 55 60.0
THA.LOC104801239 Tarenaya hassleriana HOM05D000358 ORTHO05D009346 2.3e-11 72.8 73 50.7
Peaxi162Scf00641g00315 Petunia axillaris HOM05D000358 ORTHO05D009346 3.0e-11 72.4 96 50.0
PSO761G0166 Papaver somniferum HOM05D000358 ORTHO05D009346 5.1e-11 71.6 97 45.4
Lj1A47T39 Lonicera japonica HOM05D000358 ORTHO05D009346 8.7e-11 70.9 91 46.2
PSO210G0760 Papaver somniferum HOM05D000358 ORTHO05D009346 8.7e-11 70.9 97 44.3
Phvul.001G152500 Phaseolus vulgaris HOM05D000358 ORTHO05D009346 8.7e-11 70.9 89 42.7
Aqoxy2G03373 Aquilegia oxysepala HOM05D000358 ORTHO05D009346 1.1e-10 70.5 96 47.9
BraA09t35864Z Brassica rapa HOM05D000358 ORTHO05D009346 1.1e-10 70.5 88 45.5
Sp6g02670 Schrenkiella parvula HOM05D000358 ORTHO05D009346 1.1e-10 70.5 94 44.7
A09p02150 Brassica napus HOM05D000358 ORTHO05D009346 1.5e-10 70.1 88 45.5
Eucgr.K03368 Eucalyptus grandis HOM05D000358 ORTHO05D009346 1.5e-10 70.1 79 51.9
Solyc09g065300.4 Solanum lycopersicum HOM05D000358 ORTHO05D009346 1.5e-10 70.1 75 54.7
Sopen09g027050 Solanum pennellii HOM05D000358 ORTHO05D009346 1.5e-10 70.1 75 54.7
Nitab4.5_0005971g0010 Nicotiana tabacum HOM05D000358 ORTHO05D009346 2.5e-10 69.3 95 48.4
Duzib133G0337 Durio zibethinus HOM05D000358 ORTHO05D009346 3.3e-10 68.9 101 45.5
Hma1.2p1_0822F.1_g224420 Hydrangea macrophylla HOM05D000358 ORTHO05D009346 3.3e-10 68.9 35 85.7
Nn1g02275 Nelumbo nucifera HOM05D000358 ORTHO05D009346 3.3e-10 68.9 99 44.4
EL10Ac5g10557 Beta vulgaris HOM05D000358 ORTHO05D009346 5.6e-10 68.2 97 46.4
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 5.6e-10 68.2 40 75.0
MSTRG.12558 Avicennia marina HOM05D000358 ORTHO05D009346 7.4e-10 67.8 35 82.9
PGSC0003DMG400019331 Solanum tuberosum HOM05D000358 ORTHO05D009346 7.4e-10 67.8 74 52.7
Glyma.03G155200 Glycine max HOM05D000358 ORTHO05D009346 9.6e-10 67.4 68 52.9
Lsat_1_v5_gn_9_3480 Lactuca sativa HOM05D000358 ORTHO05D009346 9.6e-10 67.4 36 80.6
PGR044G2401 Punica granatum HOM05D000358 ORTHO05D009346 9.6e-10 67.4 36 80.6
Migut.N02045 Erythranthe guttata HOM05D000358 ORTHO05D009346 2.1e-09 66.2 35 80.0
SalBow6G4489 Salvia bowleyana HOM05D000358 ORTHO05D009346 2.1e-09 66.2 67 52.2
AUR62028609 Chenopodium quinoa HOM05D000358 ORTHO05D009346 2.8e-09 65.9 99 45.5
CARHR251060 Cardamine hirsuta HOM05D000358 ORTHO05D009346 3.7e-09 65.5 92 46.7
Cc01_g19380 Coffea canephora HOM05D000358 ORTHO05D009346 3.7e-09 65.5 83 41.0
Aa31LG5G2370 Aethionema arabicum HOM05D000358 ORTHO05D009346 6.2e-09 64.7 94 43.6
Oeu029468.1 Olea europaea HOM05D000358 ORTHO05D009346 6.2e-09 64.7 106 45.3
arahy.Tifrunner.gnm1.ann1.1D6AAZ Arachis hypogaea HOM05D000358 ORTHO05D009346 8.2e-09 64.3 53 62.3
arahy.Tifrunner.gnm1.ann1.M7C8NM Arachis hypogaea HOM05D000358 ORTHO05D009346 8.2e-09 64.3 53 62.3
Zm00001eb054110 Zea mays HOM05D000358 ORTHO05D009346 8.2e-09 64.3 32 84.4
Rhsim13G0026100 Rhododendron simsii HOM05D000358 ORTHO05D009346 1.1e-08 63.9 31 83.9
HanXRQChr15g0466741 Helianthus annuus HOM05D000358 ORTHO05D009346 1.4e-08 63.5 62 50.0
Actinidia09124 Actinidia chinensis HOM05D000358 ORTHO05D009346 3.1e-08 62.4 31 77.4
ATR0332G065 Amborella trichopoda HOM05D000358 ORTHO05D009346 4.0e-08 62.0 82 40.2
Lj1g0011093 Lotus japonicus HOM05D000358 ORTHO05D009346 4.0e-08 62.0 96 41.7
FAN20G1711 Fragaria x ananassa HOM05D000358 ORTHO05D009346 6.9e-08 61.2 88 42.0
Medtr7g095090 Medicago truncatula HOM05D000358 ORTHO05D009346 6.9e-08 61.2 98 44.9
Sc17g0001440 Simmondsia chinensis HOM05D000358 ORTHO05D009346 6.9e-08 61.2 59 52.5
Ah.11g050550 Amaranthus hybridus HOM05D000358 ORTHO05D009346 9.0e-08 60.8 104 42.3
TPR.G35683 Trifolium pratense HOM05D000358 ORTHO05D009346 1.2e-07 60.5 96 46.9
SGA_v2.0_scaffold81G26022 Striga asiatica HOM05D000358 ORTHO05D009346 2.6e-07 59.3 91 42.9
Psat3g063840 Pisum sativum HOM05D000358 ORTHO05D009346 4.5e-07 58.5 96 51.0


User provided reference genes

Program Settings