Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 3.2e-256 887.9 433 100.0
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 7.6e-242 840.1 415 97.6
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 3.8e-233 811.2 415 94.0
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 3.9e-214 748.0 415 87.2
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 4.8e-188 661.4 415 75.7
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 9.1e-187 657.1 415 75.7
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 4.2e-184 648.3 415 74.7
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 5.5e-184 647.9 415 73.3
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 2.1e-183 646.0 415 73.7
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 6.1e-183 644.4 415 73.3
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 8.0e-183 644.0 415 73.0
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 1.8e-182 642.9 415 73.0
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 5.2e-182 641.3 415 73.5
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 6.8e-182 641.0 417 73.9
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 4.4e-181 638.3 415 71.1
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 1.1e-179 633.6 415 72.3
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 1.4e-179 633.3 409 72.9
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 1.8e-179 632.9 415 72.8
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 4.1e-179 631.7 417 72.9
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.2e-178 630.2 415 71.3
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 1.6e-178 629.8 415 72.5
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 2.0e-178 629.4 415 72.0
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 3.5e-178 628.6 415 71.3
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 5.9e-178 627.9 415 71.6
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 7.7e-178 627.5 415 71.1
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 1.7e-177 626.3 415 71.6
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 2.3e-177 625.9 415 71.6
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 2.3e-177 625.9 415 71.8
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 2.3e-177 625.9 415 72.5
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 3.8e-177 625.2 409 72.1
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 8.6e-177 624.0 415 71.6
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 1.5e-176 623.2 417 71.9
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 1.5e-176 623.2 415 70.1
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 5.5e-176 621.3 415 70.6
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 9.5e-176 620.5 417 69.5
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 9.5e-176 620.5 415 70.8
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 1.2e-175 620.2 400 73.0
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 1.2e-175 620.2 415 70.6
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 2.8e-175 619.0 416 71.2
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 3.6e-175 618.6 417 72.2
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 6.1e-175 617.8 414 70.8
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 1.4e-174 616.7 415 70.4
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 5.2e-174 614.8 417 71.7
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.6e-173 612.5 415 70.1
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 1.8e-171 606.3 417 70.0
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 2.4e-171 605.9 417 70.0
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 5.4e-171 604.7 416 69.0
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 9.2e-171 604.0 415 69.6
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 1.2e-170 603.6 416 69.0
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 1.6e-170 603.2 417 69.8
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 2.7e-170 602.4 410 69.5
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 8.6e-169 597.4 410 68.5
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 8.6e-169 597.4 415 69.2
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 2.5e-168 595.9 410 69.0
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 5.6e-168 594.7 415 67.5
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 5.6e-168 594.7 417 68.1
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 2.8e-167 592.4 415 68.2
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 1.8e-166 589.7 417 67.9
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 2.3e-166 589.3 417 68.1
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 4.0e-166 588.6 415 67.0
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 1.5e-165 586.6 408 68.9
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 4.4e-165 585.1 418 67.9
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 7.5e-165 584.3 415 65.8
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 9.8e-165 583.9 417 66.7
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 2.9e-164 582.4 412 66.7
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 1.9e-163 579.7 416 67.3
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 1.9e-163 579.7 420 66.0
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 2.4e-163 579.3 414 65.9
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 5.4e-163 578.2 415 67.2
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 7.0e-163 577.8 416 67.1
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 2.0e-162 576.2 420 67.1
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 3.5e-162 575.5 415 65.3
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 4.6e-162 575.1 415 64.8
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 1.3e-161 573.5 407 67.3
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 3.9e-161 572.0 415 66.7
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 1.5e-160 570.1 420 66.2
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 3.3e-160 568.9 417 65.5
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 3.3e-160 568.9 418 65.8
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 1.6e-159 566.6 419 66.8
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 2.1e-159 566.2 416 63.7
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 4.7e-159 565.1 418 65.6
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 6.2e-159 564.7 410 66.3
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 1.1e-158 563.9 420 66.2
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 8.9e-158 560.8 409 66.5
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 1.2e-157 560.5 417 63.5
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 2.0e-157 559.7 418 66.3
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 4.4e-157 558.5 417 65.7
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 7.5e-157 557.8 410 63.2
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 9.8e-157 557.4 417 65.0
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 1.7e-156 556.6 418 64.8
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 4.9e-156 555.1 410 66.6
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 1.9e-155 553.1 410 66.1
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 5.4e-155 551.6 408 66.4
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 1.6e-154 550.1 419 63.5
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 3.5e-154 548.9 410 65.9
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 4.6e-154 548.5 412 64.3
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 6.0e-154 548.1 410 65.6
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 6.0e-154 548.1 410 65.6
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 6.0e-154 548.1 410 65.9
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 1.3e-153 547.0 410 65.6
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 4.3e-152 542.0 410 66.1
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 4.7e-151 538.5 415 63.1
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 6.2e-151 538.1 412 64.1
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 1.5e-149 533.5 418 64.6
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 3.7e-148 528.9 419 63.7
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 6.4e-148 528.1 418 64.1
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 4.1e-147 525.4 418 62.0
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 9.2e-147 524.2 375 66.1
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 2.3e-145 519.6 415 60.5
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 2.2e-140 503.1 416 58.2
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 1.9e-136 490.0 409 57.9
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 4.4e-133 478.8 415 56.1
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 3.8e-132 475.7 420 57.6
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 8.1e-127 458.0 354 65.3
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 1.2e-125 454.1 405 53.8
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 1.3e-119 434.1 415 52.0
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 1.2e-114 417.5 415 50.6
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 6.9e-110 401.7 403 48.9
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 3.4e-109 399.4 335 59.4
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 1.7e-108 397.1 412 48.8
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 1.1e-104 384.4 249 74.7
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 9.4e-99 364.8 277 62.8
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 7.2e-91 338.6 419 45.1
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 1.1e-88 331.3 360 46.9
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 5.7e-88 328.9 305 53.8
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 3.1e-86 323.2 248 62.1
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 9.1e-86 321.6 302 56.6
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 1.3e-60 238.0 312 40.4
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 2.6e-56 223.8 262 48.1
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 2.9e-55 220.3 136 72.8
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 3.5e-45 186.8 126 70.6
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 2.0e-40 171.0 148 58.8
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 4.0e-33 146.7 99 67.7
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 9.2e-30 135.6 88 69.3
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 6.8e-25 119.4 74 70.3
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 1.5e-24 118.2 71 71.8
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 4.9e-23 113.2 71 70.4
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 7.1e-22 109.4 71 69.0
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 7.1e-22 109.4 71 69.0
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 3.9e-20 103.6 100 52.0
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 1.1e-19 102.1 78 61.5
HanXRQChr02g0054781 Helianthus annuus HOM05D003488 ORTHO05D004214 8.1e-10 69.3 424 21.2
VMungo1127G1058 Vigna mungo HOM05D003488 ORTHO05D004214 1.8e-09 68.2 402 22.1
HanXRQChr13g0397431 Helianthus annuus HOM05D003488 ORTHO05D004214 2.4e-09 67.8 337 23.4
Glyma.11G183600 Glycine max HOM05D003488 ORTHO05D004214 3.1e-09 67.4 411 22.6
arahy.Tifrunner.gnm1.ann1.0J6PHG Arachis hypogaea HOM05D003488 ORTHO05D004214 9.0e-09 65.9 408 22.1
arahy.Tifrunner.gnm1.ann1.Q9WWUM Arachis hypogaea HOM05D003488 ORTHO05D004214 9.0e-09 65.9 408 22.1
Medtr7g104490 Medicago truncatula HOM05D003488 ORTHO05D004214 9.0e-09 65.9 317 23.3
Prupe.7G111200 Prunus persica HOM05D003488 ORTHO05D004214 1.5e-08 65.1 400 23.2
FAN17G2978 Fragaria x ananassa HOM05D030415 ORTHO05D006431 2.0e-08 64.7 191 29.8
Zm00001eb147200 Zea mays HOM05D003488 ORTHO05D004214 2.6e-08 64.3 275 24.0
MD14G1022200 Malus domestica HOM05D003488 ORTHO05D004214 4.5e-08 63.5 305 23.9
Mapoly0037s0051 Marchantia polymorpha HOM05D003488 ORTHO05D004214 4.5e-08 63.5 403 22.6
Sp5g22120 Schrenkiella parvula HOM05D003488 ORTHO05D004214 7.6e-08 62.8 319 22.3
Aa31LG2G3560 Aethionema arabicum HOM05D003488 ORTHO05D004214 9.9e-08 62.4 321 23.7
TPR.G11390 Trifolium pratense HOM05D003488 ORTHO05D004214 9.9e-08 62.4 306 22.9
Ca_19405_v3 Cicer arietinum L. HOM05D003488 ORTHO05D004214 1.3e-07 62.0 304 22.0
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 2.2e-07 61.2 257 26.8
Lj3g0011633 Lotus japonicus HOM05D003488 ORTHO05D004214 2.2e-07 61.2 417 23.5
Lalb_Chr02g0154961 Lupinus albus HOM05D003488 ORTHO05D004214 2.2e-07 61.2 241 23.7
Hma1.2p1_0388F.1_g142070 Hydrangea macrophylla HOM05D001477 ORTHO05D001182 2.9e-07 60.8 242 23.6
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 4.9e-07 60.1 281 26.3
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 4.9e-07 60.1 281 26.3
Sopen11g027050 Solanum pennellii HOM05D003488 ORTHO05D004214 4.9e-07 60.1 309 23.9
Peaxi162Scf00003g00057 Petunia axillaris HOM05D003488 ORTHO05D004214 1.1e-06 58.9 309 23.6
ECA233G3236 Erigeron canadensis HOM05D003488 ORTHO05D004214 1.9e-06 58.2 310 22.9
MBI04_g06220_MAGBIO Magnolia biondii HOM05D006588 ORTHO05D008272 2.4e-06 57.8 361 23.5
Thhalv10018615m.g Eutrema salsugineum HOM05D003488 ORTHO05D004214 5.5e-06 56.6 240 25.4
HanXRQChr03g0060961 Helianthus annuus HOM05D006588 ORTHO05D008272 5.5e-06 56.6 236 27.1
Ca_08884_v3 Cicer arietinum L. HOM05D003488 ORTHO05D004214 7.1e-06 56.2 280 24.6
vmacro18828 Vaccinium macrocarpon HOM05D001477 ORTHO05D001182 7.1e-06 56.2 291 24.4


User provided reference genes

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