Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 1.4e-110 402.9 198 100.0
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 3.3e-107 391.7 198 96.0
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 8.9e-105 383.6 198 93.9
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 4.3e-99 364.8 198 89.9
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 1.6e-82 309.7 198 73.7
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 4.8e-82 308.1 198 75.3
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 1.1e-81 307.0 198 74.2
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 9.0e-81 303.9 198 72.2
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 2.6e-80 302.4 198 72.2
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 1.7e-79 299.7 198 71.2
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 2.2e-79 299.3 198 71.7
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 3.8e-79 298.5 198 72.2
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 8.4e-79 297.4 198 71.2
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 2.4e-78 295.8 198 70.2
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 3.2e-78 295.4 198 72.2
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 4.2e-78 295.0 198 69.2
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 4.2e-78 295.0 198 71.7
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 4.2e-78 295.0 198 71.7
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 9.3e-78 293.9 199 72.4
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 9.3e-78 293.9 198 70.2
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 9.3e-78 293.9 198 69.2
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 1.6e-77 293.1 198 69.2
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 1.6e-77 293.1 198 69.2
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 2.1e-77 292.7 198 72.2
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 2.1e-77 292.7 198 72.2
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.7e-77 292.4 198 70.2
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.7e-77 292.4 198 70.2
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 2.7e-77 292.4 198 70.2
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 3.5e-77 292.0 198 68.7
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 7.9e-77 290.8 199 69.8
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 1.0e-76 290.4 198 70.2
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 1.0e-76 290.4 198 70.2
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 1.3e-76 290.0 198 69.7
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 1.7e-76 289.7 198 68.2
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 1.7e-76 289.7 198 68.2
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 1.7e-76 289.7 198 69.2
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 1.7e-76 289.7 198 67.2
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 1.7e-76 289.7 198 70.7
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 2.3e-76 289.3 198 66.7
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 2.3e-76 289.3 198 69.7
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 2.3e-76 289.3 198 68.7
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 3.0e-76 288.9 198 67.7
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 5.1e-76 288.1 198 68.2
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 6.6e-76 287.7 198 68.7
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 6.6e-76 287.7 198 68.7
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 8.7e-76 287.3 198 68.7
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 8.7e-76 287.3 200 67.0
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 8.7e-76 287.3 198 66.7
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 8.7e-76 287.3 198 66.7
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 1.1e-75 287.0 198 66.7
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 1.5e-75 286.6 198 68.2
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 1.5e-75 286.6 198 68.7
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 3.3e-75 285.4 198 67.2
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 4.3e-75 285.0 198 66.7
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 7.3e-75 284.3 198 67.2
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 9.6e-75 283.9 198 66.7
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 1.3e-74 283.5 198 66.7
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 2.1e-74 282.7 198 66.2
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 2.1e-74 282.7 198 67.7
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 2.1e-74 282.7 200 67.5
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 2.8e-74 282.3 198 67.2
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 2.8e-74 282.3 198 65.7
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 4.8e-74 281.6 198 66.2
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 6.2e-74 281.2 198 67.7
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 8.1e-74 280.8 198 64.6
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 1.8e-73 279.6 198 67.7
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 1.8e-73 279.6 198 67.7
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 2.4e-73 279.3 206 64.1
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 3.1e-73 278.9 198 65.2
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 4.0e-73 278.5 198 68.2
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 5.3e-73 278.1 198 65.7
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 6.9e-73 277.7 233 61.4
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 1.2e-72 276.9 216 62.5
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.2e-72 276.9 206 64.1
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.5e-72 276.6 198 66.7
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 2.0e-72 276.2 198 65.7
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 3.4e-72 275.4 198 67.2
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 9.9e-72 273.9 219 61.2
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 2.2e-71 272.7 198 64.6
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 3.8e-71 271.9 198 64.1
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 8.4e-71 270.8 198 65.7
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 1.1e-70 270.4 217 63.6
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 1.4e-70 270.0 241 58.1
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 1.9e-70 269.6 198 63.6
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 2.4e-70 269.2 176 72.2
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 1.6e-69 266.5 234 56.4
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 2.1e-69 266.2 234 56.0
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 3.5e-69 265.4 198 63.6
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 4.3e-67 258.5 198 60.6
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 7.4e-67 257.7 169 71.0
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 9.6e-67 257.3 198 61.1
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 3.7e-66 255.4 253 53.0
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 3.7e-66 255.4 198 62.6
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 6.2e-66 254.6 198 61.6
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 1.1e-65 253.8 198 61.1
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 1.4e-65 253.4 188 67.0
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 2.4e-65 252.7 236 54.2
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 2.0e-64 249.6 180 65.0
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 4.5e-64 248.4 171 66.1
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 3.2e-62 242.3 173 65.3
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 3.9e-60 235.3 198 57.6
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 1.5e-59 233.4 198 60.6
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 1.5e-59 233.4 191 58.6
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 2.5e-59 232.6 169 65.7
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 7.4e-59 231.1 198 60.1
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 6.9e-57 224.6 149 67.8
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 4.5e-56 221.9 198 52.0
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 5.9e-56 221.5 155 65.8
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 3.0e-52 209.1 145 65.5
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 5.1e-52 208.4 167 59.9
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 1.9e-51 206.5 198 48.5
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 1.4e-49 200.3 198 46.0
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 1.8e-49 199.9 196 49.5
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 1.7e-47 193.4 135 69.6
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 2.5e-46 189.5 142 64.1
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 9.4e-46 187.6 191 47.1
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 2.5e-43 179.5 133 59.4
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 4.8e-42 175.3 186 52.7
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 8.2e-42 174.5 130 59.2
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 3.1e-41 172.6 115 65.2
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 1.2e-40 170.6 115 64.3
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 4.5e-40 168.7 115 70.4
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 4.2e-38 162.2 130 61.5
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 8.8e-36 154.5 110 70.0
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 2.0e-35 153.3 160 46.2
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 5.7e-35 151.8 142 50.0
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.7e-31 140.2 115 50.4
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 2.2e-31 139.8 115 50.4
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 2.1e-29 133.3 143 46.9
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 1.5e-27 127.1 91 58.2
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 4.4e-27 125.6 137 52.6
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 5.3e-25 118.6 98 63.3
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 1.2e-24 117.5 77 77.9
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 1.2e-24 117.5 145 37.2
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 5.9e-24 115.2 77 76.6
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 1.9e-22 110.2 77 72.7
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 5.5e-22 108.6 77 72.7
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 8.0e-21 104.8 77 70.1
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 8.0e-21 104.8 77 70.1
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 8.0e-21 104.8 77 68.8
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.4e-20 104.0 77 68.8
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 2.3e-20 103.2 75 68.0
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 6.8e-20 101.7 83 63.9
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 2.0e-19 100.1 77 61.0
Thecc.07G026400 Theobroma cacao HOM05D004322 ORTHO05D005033 1.7e-18 97.1 68 61.8
Cpa.g.sc157.23 Carica papaya HOM05D004322 ORTHO05D005033 5.4e-17 92.0 55 70.9
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 2.0e-16 90.1 69 68.1
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 5.9e-16 88.6 72 63.9
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.7e-15 87.0 75 60.0
Glyma.10G118633 Glycine max HOM05D004322 ORTHO05D005033 3.8e-15 85.9 55 67.3
QL11p019127 Quercus lobata HOM05D004322 ORTHO05D005033 1.1e-14 84.3 64 65.6
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 4.2e-14 82.4 145 40.7
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 6.1e-13 78.6 65 63.1
Lsat_1_v5_gn_9_65501 Lactuca sativa HOM05D001588 ORTHO05D002975 2.3e-12 76.6 55 50.9
Lsat_1_v5_gn_7_68880 Lactuca sativa HOM05D004322 ORTHO05D005033 3.4e-11 72.8 63 46.0
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 2.8e-10 69.7 56 55.4
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 1.1e-09 67.8 56 53.6
TPR.G19742 Trifolium pratense HOM05D004322 ORTHO05D005033 1.4e-09 67.4 46 73.9
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 4.5e-08 62.4 48 56.2
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.0e-07 61.2 63 49.2
VMungo0540G1689 Vigna mungo HOM05D004322 ORTHO05D005033 3.8e-07 59.3 188 30.9
HPP92_016147 Vanilla planifolia HOM05D004322 ORTHO05D005033 6.6e-07 58.5 55 49.1
Lsat_1_v5_gn_4_104380 Lactuca sativa HOM05D001722 ORTHO05D048310 2.5e-06 56.6 36 55.6


User provided reference genes

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