Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 3.3e-192 674.9 343 100.0
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 9.8e-184 646.7 343 95.6
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 6.8e-177 624.0 344 92.4
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 1.2e-170 603.2 343 89.2
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 2.0e-168 595.9 343 88.0
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 1.7e-135 486.5 344 72.1
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 1.4e-134 483.4 344 72.1
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 2.3e-132 476.1 344 72.4
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 2.3e-132 476.1 350 70.3
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 1.1e-126 457.2 344 69.5
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 3.2e-126 455.7 343 70.3
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 4.6e-125 451.8 339 70.5
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 3.0e-124 449.1 346 69.4
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 6.7e-124 448.0 343 68.8
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.9e-123 446.4 346 69.4
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 2.5e-123 446.0 346 69.1
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.5e-123 446.0 344 68.6
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 2.1e-122 443.0 346 69.7
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 4.8e-122 441.8 343 67.3
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 1.4e-121 440.3 348 67.8
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 1.4e-121 440.3 344 67.7
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 6.9e-121 438.0 347 68.6
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 2.0e-120 436.4 356 67.1
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 2.6e-120 436.0 348 65.8
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 5.8e-120 434.9 344 67.2
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 5.8e-120 434.9 344 67.4
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.7e-119 433.3 344 68.3
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 2.9e-119 432.6 348 67.2
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 2.9e-119 432.6 350 67.1
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 3.8e-119 432.2 344 68.0
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 8.4e-119 431.0 348 66.4
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 1.9e-118 429.9 345 66.1
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 3.2e-118 429.1 344 67.7
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 2.1e-117 426.4 344 66.3
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 7.9e-117 424.5 344 65.4
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 2.3e-116 422.9 345 65.8
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 1.5e-115 420.2 345 65.5
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 1.5e-115 420.2 345 65.5
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 5.6e-115 418.3 344 66.3
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.6e-114 416.8 344 65.7
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 3.7e-114 415.6 344 64.2
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 8.2e-114 414.5 344 65.4
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 4.0e-113 412.1 344 64.5
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 2.0e-112 409.8 349 65.9
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 2.0e-112 409.8 344 64.8
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 2.6e-112 409.5 345 62.6
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 2.6e-112 409.5 344 63.4
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 3.4e-112 409.1 346 65.3
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 7.6e-112 407.9 346 64.2
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 6.5e-111 404.8 346 63.6
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 5.5e-110 401.7 348 63.2
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 1.6e-109 400.2 333 64.3
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 2.1e-109 399.8 344 64.0
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 1.0e-108 397.5 348 63.8
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 1.3e-108 397.1 409 55.7
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 8.7e-108 394.4 343 63.3
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 1.1e-107 394.0 347 63.1
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 4.3e-107 392.1 325 64.6
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 7.4e-107 391.3 390 57.9
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 7.4e-107 391.3 414 55.1
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 2.8e-106 389.4 349 62.2
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 2.8e-106 389.4 344 61.9
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 4.8e-106 388.7 345 60.9
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 8.2e-106 387.9 346 63.0
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 1.4e-105 387.1 344 61.9
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 2.4e-105 386.3 349 61.0
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 5.3e-105 385.2 344 62.8
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 5.3e-105 385.2 346 60.4
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 6.9e-105 384.8 344 60.8
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 9.0e-105 384.4 344 61.6
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 4.5e-104 382.1 346 60.1
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 7.7e-104 381.3 346 61.8
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 1.0e-103 380.9 346 61.6
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 1.3e-103 380.6 297 67.3
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 1.3e-103 380.6 395 56.2
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 3.2e-102 375.9 324 63.0
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 7.2e-102 374.8 347 61.1
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 2.1e-101 373.2 347 61.1
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 2.7e-101 372.9 347 61.1
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 4.6e-101 372.1 351 60.1
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 2.3e-100 369.8 342 59.9
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 5.1e-100 368.6 346 60.4
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 1.5e-99 367.1 340 58.2
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 3.3e-99 365.9 348 60.1
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 4.3e-99 365.5 346 61.0
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 5.7e-99 365.2 346 58.7
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 9.7e-99 364.4 344 58.4
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 9.7e-99 364.4 348 60.1
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 1.3e-98 364.0 344 59.0
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 4.8e-98 362.1 345 58.6
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 6.3e-98 361.7 346 59.2
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 1.8e-97 360.1 322 63.7
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 5.3e-97 358.6 344 59.6
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 6.9e-97 358.2 357 59.1
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 2.0e-96 356.7 348 58.0
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 2.9e-95 352.8 345 58.3
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 3.8e-95 352.4 344 58.1
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 8.5e-95 351.3 349 56.4
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 8.5e-95 351.3 345 58.3
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 1.4e-94 350.5 346 58.4
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 1.9e-94 350.1 345 58.3
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 5.5e-94 348.6 327 58.7
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 1.2e-93 347.4 283 65.0
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 1.6e-93 347.1 346 56.1
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 2.1e-93 346.7 350 56.9
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 2.7e-93 346.3 353 56.1
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 2.3e-92 343.2 345 57.1
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 3.0e-92 342.8 344 55.8
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 1.5e-91 340.5 346 54.9
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 2.0e-91 340.1 350 54.9
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 3.3e-91 339.3 339 57.5
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 3.3e-91 339.3 339 57.5
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 3.3e-91 339.3 269 67.3
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 5.7e-91 338.6 340 58.2
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 5.7e-91 338.6 340 58.2
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 7.4e-91 338.2 346 56.1
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 9.7e-91 337.8 344 55.2
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 3.7e-90 335.9 333 57.4
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 3.7e-90 335.9 333 57.4
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 6.3e-90 335.1 349 56.7
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 1.4e-89 334.0 339 53.1
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 1.8e-89 333.6 347 59.4
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 3.1e-89 332.8 335 57.6
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 5.3e-89 332.0 340 55.0
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 7.0e-89 331.6 350 54.0
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 9.1e-89 331.3 328 57.0
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 1.7e-87 327.0 344 55.5
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 5.0e-87 325.5 347 55.3
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 5.0e-87 325.5 339 56.6
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 5.0e-87 325.5 354 54.0
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 6.5e-87 325.1 348 54.0
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 1.1e-86 324.3 332 56.6
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 1.1e-86 324.3 348 53.7
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 2.5e-86 323.2 348 54.0
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 2.1e-85 320.1 348 54.3
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 3.0e-84 316.2 352 52.8
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 6.3e-82 308.5 248 66.5
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 1.2e-80 304.3 351 50.7
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 1.9e-78 297.0 353 51.3
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 3.4e-75 286.2 277 58.5
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 5.7e-75 285.4 254 61.8
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 1.2e-67 261.2 209 67.0
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 2.4e-65 253.4 343 49.9
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 4.0e-60 236.1 250 53.6
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 8.9e-60 235.0 335 44.2
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 8.3e-50 201.8 348 39.7
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 4.7e-45 186.0 331 39.9
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 1.9e-38 164.1 393 32.8
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 3.2e-33 146.7 230 42.2
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 2.3e-31 140.6 156 55.1
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 4.9e-26 122.9 158 48.1
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 5.3e-20 102.8 228 32.9
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 1.6e-16 91.3 90 56.7
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 2.5e-14 84.0 142 38.0
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 3.1e-12 77.0 245 27.3
SMO367G0918 Selaginella moellendorffii HOM05D004688 ORTHO05D005490 1.2e-11 75.1 186 27.4
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 8.4e-10 68.9 180 33.3
unitig_8.g5063 Utricularia gibba HOM05D004688 ORTHO05D005490 3.5e-08 63.5 141 34.0
Pp3c24_15840 Physcomitrium patens HOM05D017133 ORTHO05D005490 4.6e-08 63.2 351 25.4
AagrBONN_evm.TU.Sc2ySwM_117.2972 Anthoceros agrestis HOM05D034434 ORTHO05D019609 6.7e-07 59.3 241 22.4
Pp3c7_3600 Physcomitrium patens HOM05D017133 ORTHO05D019609 8.7e-07 58.9 251 25.9
Pp3c18_2430 Physcomitrium patens HOM05D017133 ORTHO05D019609 1.1e-06 58.5 261 24.1
AagrBONN_evm.TU.Sc2ySwM_228.4062 Anthoceros agrestis HOM05D034434 ORTHO05D002774 1.5e-06 58.2 135 24.4


User provided reference genes

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