Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014208.2 Cucumis melo HOM05D005255 ORTHO05D006276 0.0e+00 1277.7 638 100.0
ClCG04G003970 Citrullus lanatus HOM05D005255 ORTHO05D006276 2.1e-293 1011.9 641 82.7
Sed0023795 Sechium edule HOM05D005255 ORTHO05D006276 1.0e-255 886.7 642 73.7
Prupe.7G049600 Prunus persica HOM05D005255 ORTHO05D006276 3.9e-170 602.4 604 55.1
Haze_19754 Corylus avellana HOM05D005255 ORTHO05D006276 1.5e-166 590.5 594 56.1
CiPaw.09G042700 Carya illinoinensis HOM05D005255 ORTHO05D006276 1.7e-165 587.0 604 55.6
QL07p004453 Quercus lobata HOM05D005255 ORTHO05D006276 1.4e-162 577.4 624 52.9
Cfa016749 Carpinus fangiana HOM05D005255 ORTHO05D006276 3.9e-162 575.9 615 54.1
CSS0035930 Camellia sinensis var. sinensis HOM05D005255 ORTHO05D006276 6.3e-160 568.5 660 49.2
Duzib093G1389 Durio zibethinus HOM05D005255 ORTHO05D006276 2.4e-159 566.6 628 51.3
Actinidia38145 Actinidia chinensis HOM05D005255 ORTHO05D006276 3.2e-156 556.2 622 51.4
Sabra06G0031000 Salix brachista HOM05D005255 ORTHO05D006276 1.2e-155 554.3 652 51.1
Atru.chr1.1248 Acer truncatum HOM05D005255 ORTHO05D006276 1.6e-155 553.9 606 53.3
Manes.09G016721 Manihot esculenta HOM05D005255 ORTHO05D006276 2.1e-155 553.5 685 49.2
Rhsim04G0108300 Rhododendron simsii HOM05D005255 ORTHO05D006276 3.6e-155 552.7 615 51.9
Thecc.05G144600 Theobroma cacao HOM05D005255 ORTHO05D006276 2.3e-154 550.1 613 51.1
Manes.09G016500 Manihot esculenta HOM05D005255 ORTHO05D006276 5.2e-154 548.9 682 49.3
TWI74G1492 Tripterygium wilfordii HOM05D005255 ORTHO05D006276 2.8e-152 543.1 613 50.9
COL.COLO4_21290 Corchorus olitorius HOM05D005255 ORTHO05D006276 6.3e-152 542.0 609 50.9
Lj1g0022872 Lotus japonicus HOM05D005255 ORTHO05D006276 2.4e-151 540.0 671 48.6
GSVIVG01033557001 Vitis vinifera HOM05D005255 ORTHO05D006276 3.1e-151 539.7 617 51.4
Glyma.03G132200 Glycine max HOM05D005255 ORTHO05D006276 2.0e-150 537.0 673 47.0
Eucgr.A02293 Eucalyptus grandis HOM05D005255 ORTHO05D006276 1.0e-149 534.6 601 50.9
Medtr7g090680 Medicago truncatula HOM05D005255 ORTHO05D006276 1.0e-149 534.6 600 50.2
CANSAT80G1558 Cannabis sativa HOM05D005255 ORTHO05D006276 1.9e-148 530.4 623 50.2
Nn7g36447 Nelumbo nucifera HOM05D005255 ORTHO05D006276 1.9e-148 530.4 635 47.9
Glyma.19G134000 Glycine max HOM05D005255 ORTHO05D006276 4.2e-148 529.3 671 47.2
PGR031G1801 Punica granatum HOM05D005255 ORTHO05D006276 4.7e-147 525.8 601 50.1
PSO339G5261 Papaver somniferum HOM05D005255 ORTHO05D006276 1.4e-146 524.2 619 49.3
RcHm_v2.0_Chr3g0484561 Rosa chinensis HOM05D005255 ORTHO05D006276 2.3e-146 523.5 597 50.6
VMungo1383G2357 Vigna mungo HOM05D005255 ORTHO05D006276 3.0e-146 523.1 592 49.3
Cc06_g18410 Coffea canephora HOM05D005255 ORTHO05D006276 5.2e-146 522.3 602 49.2
Migut.J01697 Erythranthe guttata HOM05D005255 ORTHO05D006276 2.6e-145 520.0 618 49.4
Psat3g075800 Pisum sativum HOM05D005255 ORTHO05D006276 2.6e-145 520.0 622 49.2
CAN.G1237.20 Capsicum annuum HOM05D005255 ORTHO05D006276 5.7e-145 518.8 646 47.2
Phvul.001G128100 Phaseolus vulgaris HOM05D005255 ORTHO05D006276 5.7e-145 518.8 659 47.5
arahy.Tifrunner.gnm1.ann1.5V2BX3 Arachis hypogaea HOM05D005255 ORTHO05D006276 7.5e-145 518.5 615 48.3
Solyc04g017650.4 Solanum lycopersicum HOM05D005255 ORTHO05D006276 9.7e-145 518.1 619 47.7
DCAR_020535 Daucus carota HOM05D005255 ORTHO05D006276 1.3e-144 517.7 600 47.2
Ciclev10006800m.g Citrus clementina HOM05D005255 ORTHO05D006276 2.8e-144 516.5 598 51.2
Lj1A1118T28 Lonicera japonica HOM05D005255 ORTHO05D006276 2.8e-144 516.5 595 50.1
arahy.Tifrunner.gnm1.ann1.FQMP84 Arachis hypogaea HOM05D005255 ORTHO05D006276 4.8e-144 515.8 620 47.6
Sopen04g008740 Solanum pennellii HOM05D005255 ORTHO05D006276 1.1e-143 514.6 620 47.4
Lalb_Chr25g0287041 Lupinus albus HOM05D005255 ORTHO05D006276 4.1e-143 512.7 623 48.3
ECA236G0023 Erigeron canadensis HOM05D005255 ORTHO05D006276 2.0e-142 510.4 595 48.7
Potri.006G045100 Populus trichocarpa HOM05D005255 ORTHO05D006276 5.0e-141 505.8 569 52.4
Dinv30292 Davidia involucrata HOM05D005255 ORTHO05D006276 1.9e-140 503.8 578 51.2
CsaV3_4G021950 Cucumis sativus L. HOM05D005255 ORTHO05D006276 2.5e-140 503.4 308 84.4
TPR.G32740 Trifolium pratense HOM05D005255 ORTHO05D006276 2.5e-140 503.4 646 45.7
CANSAT80G0695 Cannabis sativa HOM05D005255 ORTHO05D006276 3.6e-139 499.6 589 50.6
Oeu008184.2 Olea europaea HOM05D005255 ORTHO05D006276 1.0e-138 498.0 649 46.5
Lj1C1121T6 Lonicera japonica HOM05D005255 ORTHO05D006276 5.2e-138 495.7 573 49.4
Aqoxy2G00272 Aquilegia oxysepala HOM05D005255 ORTHO05D006276 1.3e-136 491.1 654 44.8
Peaxi162Scf00130g01019 Petunia axillaris HOM05D005255 ORTHO05D006276 1.7e-136 490.7 598 46.3
HanXRQChr06g0176811 Helianthus annuus HOM05D005255 ORTHO05D006276 1.4e-135 487.6 603 45.8
Thhalv10016390m.g Eutrema salsugineum HOM05D005255 ORTHO05D006276 2.0e-134 483.8 659 44.5
Nitab4.5_0005195g0020 Nicotiana tabacum HOM05D005255 ORTHO05D006276 2.0e-134 483.8 605 46.4
SalBow6G4730 Salvia bowleyana HOM05D005255 ORTHO05D006276 1.7e-133 480.7 622 45.5
Aa31LG1G23460 Aethionema arabicum HOM05D005255 ORTHO05D006276 5.5e-132 475.7 595 46.1
TAR623G1148 Trochodendron aralioides HOM05D005255 ORTHO05D006276 5.5e-132 475.7 540 50.6
AT2G41450 Arabidopsis thaliana HOM05D005255 ORTHO05D006276 1.2e-131 474.6 653 42.7
EL10Ac3g07169 Beta vulgaris HOM05D005255 ORTHO05D006276 1.0e-130 471.5 599 47.2
CARHR136560 Cardamine hirsuta HOM05D005255 ORTHO05D006276 1.5e-129 467.6 599 44.7
Carub.0004s2374 Capsella rubella HOM05D005255 ORTHO05D006276 2.0e-129 467.2 596 45.5
MBI19_g17528_MAGBIO Magnolia biondii HOM05D005255 ORTHO05D006276 9.8e-129 464.9 636 44.7
CDE08G0636 Ceratophyllum demersum HOM05D005255 ORTHO05D006276 1.1e-127 461.5 607 43.2
Hund24659 Selenicereus undatus HOM05D005255 ORTHO05D006276 7.0e-127 458.8 610 44.1
AL4G39520 Arabidopsis lyrata HOM05D005255 ORTHO05D006276 9.2e-127 458.4 608 43.8
AUR62030394 Chenopodium quinoa HOM05D005255 ORTHO05D006276 9.2e-127 458.4 605 45.6
Sp4g23710 Schrenkiella parvula HOM05D005255 ORTHO05D006276 9.2e-127 458.4 599 44.7
THA.LOC104817056 Tarenaya hassleriana HOM05D005255 ORTHO05D006276 1.7e-125 454.1 603 46.6
SGA_v2.0_scaffold105G30345 Striga asiatica HOM05D005255 ORTHO05D006276 2.9e-125 453.4 645 43.9
Ah.13g076740 Amaranthus hybridus HOM05D005255 ORTHO05D006276 2.5e-124 450.3 622 42.4
BraA05t19224Z Brassica rapa HOM05D005255 ORTHO05D006276 4.3e-124 449.5 593 43.8
Lsat_1_v5_gn_8_83080 Lactuca sativa HOM05D005255 ORTHO05D006276 1.8e-122 444.1 575 45.2
AUR62026140 Chenopodium quinoa HOM05D005255 ORTHO05D006276 8.9e-122 441.8 643 42.8
Os05g0376600 Oryza sativa ssp. japonica HOM05D005255 ORTHO05D006276 4.4e-121 439.5 604 44.0
Zm00001eb286800 Zea mays HOM05D005255 ORTHO05D006276 7.5e-121 438.7 603 43.1
A05p02290 Brassica napus HOM05D005255 ORTHO05D006276 9.8e-121 438.3 619 42.2
Ca_08423_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 1.3e-120 438.0 574 44.6
C04p02730 Brassica napus HOM05D005255 ORTHO05D006276 1.1e-119 434.9 596 43.1
BolC4t21913H Brassica oleracea HOM05D005255 ORTHO05D006276 1.1e-119 434.9 596 43.1
BcaC02g12783 Brassica carinata HOM05D005255 ORTHO05D006276 2.4e-119 433.7 594 43.6
Nitab4.5_0011420g0030 Nicotiana tabacum HOM05D005255 ORTHO05D006276 9.2e-119 431.8 713 40.1
VMungo1383G1524 Vigna mungo HOM05D005255 ORTHO05D006276 2.7e-118 430.3 631 42.2
TAR624G0617 Trochodendron aralioides HOM05D005255 ORTHO05D006276 1.9e-116 424.1 536 47.0
FvH4_6g24820 Fragaria vesca HOM05D005255 ORTHO05D006276 1.4e-114 417.9 488 50.6
ATR0721G141 Amborella trichopoda HOM05D005255 ORTHO05D006276 1.2e-110 404.8 726 36.5
TAR623G1440 Trochodendron aralioides HOM05D005255 ORTHO05D006276 1.3e-109 401.4 488 48.8
Cpa.g.sc120.15 Carica papaya HOM05D005255 ORTHO05D006276 6.8e-98 362.5 530 44.0
HPP92_003251 Vanilla planifolia HOM05D005255 ORTHO05D006276 3.9e-93 346.7 592 38.2
FAN14G1086 Fragaria x ananassa HOM05D005255 ORTHO05D006276 1.2e-86 325.1 527 41.2
Sc13g0001470 Simmondsia chinensis HOM05D005255 ORTHO05D006276 1.9e-79 301.2 453 42.2
AagrBONN_evm.TU.Sc2ySwM_228.5074 Anthoceros agrestis HOM05D005255 ORTHO05D006276 8.1e-75 285.8 809 29.8
Pp3c8_2040 Physcomitrium patens HOM05D005255 ORTHO05D006276 7.6e-73 279.3 758 28.4
PGSC0003DMG400012725 Solanum tuberosum HOM05D005255 ORTHO05D006276 7.1e-71 272.7 295 51.5
CAN.G1237.18 Capsicum annuum HOM05D005255 ORTHO05D006276 5.1e-61 240.0 220 55.0
Nitab4.5_0000826g0020 Nicotiana tabacum HOM05D005255 ORTHO05D006276 1.1e-60 238.8 336 43.2
RcHm_v2.0_Chr3g0484121 Rosa chinensis HOM05D005255 ORTHO05D006276 5.7e-60 236.5 185 63.2
Pp3c4_1630 Physcomitrium patens HOM05D005255 ORTHO05D006276 2.9e-56 224.2 872 25.0
Pp3c4_1631 Physcomitrium patens HOM05D005255 ORTHO05D006276 2.9e-56 224.2 872 25.0
MSTRG.6398 Avicennia marina HOM05D005255 ORTHO05D006276 5.1e-53 213.4 163 62.0
HPP92_003249 Vanilla planifolia HOM05D005255 ORTHO05D006276 5.3e-50 203.4 366 37.2
FAN02G3622 Fragaria x ananassa HOM05D005255 ORTHO05D006276 1.5e-49 201.8 411 38.2
unitig_8.g3497 Utricularia gibba HOM05D005255 ORTHO05D006276 3.4e-49 200.7 208 48.6
Mapoly0085s0026 Marchantia polymorpha HOM05D005255 ORTHO05D006276 5.9e-49 199.9 289 36.7
PGSC0003DMG400012726 Solanum tuberosum HOM05D005255 ORTHO05D006276 2.5e-39 167.9 177 47.5
vmacro09038 Vaccinium macrocarpon HOM05D005255 ORTHO05D006276 1.6e-38 165.2 132 59.1
MSTRG.6397 Avicennia marina HOM05D005255 ORTHO05D006276 3.6e-38 164.1 311 37.3
SEGI_00937 Sequoiadendron giganteum HOM05D005255 ORTHO05D006276 8.0e-38 162.9 165 47.3
vmacro09037 Vaccinium macrocarpon HOM05D005255 ORTHO05D006276 1.5e-36 158.7 307 39.1
Nitab4.5_0001618g0070 Nicotiana tabacum HOM05D005255 ORTHO05D006276 5.0e-32 143.7 104 64.4
RcHm_v2.0_Chr3g0484111 Rosa chinensis HOM05D005255 ORTHO05D006276 5.0e-32 143.7 101 69.3
Ca_30365_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 1.2e-30 139.0 78 75.6
Sopen04g008710 Solanum pennellii HOM05D005255 ORTHO05D006276 3.6e-30 137.5 104 61.5
Ca_08424_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 6.1e-30 136.7 113 62.8
unitig_8.g3496 Utricularia gibba HOM05D005255 ORTHO05D006276 6.8e-29 133.3 335 34.0
TAR628G1157 Trochodendron aralioides HOM05D005255 ORTHO05D006276 1.3e-27 129.0 92 62.0
SMO364G0001 Selaginella moellendorffii HOM05D005255 ORTHO05D006276 5.3e-26 123.6 313 28.8
vmacro09036 Vaccinium macrocarpon HOM05D005255 ORTHO05D006276 7.0e-26 123.2 80 71.2
SEGI_13590 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 1.2e-25 122.5 101 52.5
RcHm_v2.0_Chr1g0374991 Rosa chinensis HOM05D005255 ORTHO05D006276 3.5e-25 120.9 69 84.1
Lsat_1_v5_gn_8_83120 Lactuca sativa HOM05D005255 ORTHO05D006276 1.0e-24 119.4 186 37.6
Dinv30288 Davidia involucrata HOM05D007529 ORTHO05D007451 1.3e-24 119.0 94 64.9
FAN14G4897 Fragaria x ananassa HOM05D005255 ORTHO05D006276 1.2e-22 112.5 120 47.5
SEGI_39771 Sequoiadendron giganteum HOM05D005255 ORTHO05D006276 4.0e-21 107.5 106 44.3
Nitab4.5_0000826g0030 Nicotiana tabacum HOM05D005255 ORTHO05D006276 2.8e-19 101.3 60 68.3
Lsat_1_v5_gn_5_6521 Lactuca sativa HOM05D005255 ORTHO05D006276 1.2e-17 95.9 87 49.4
Ca_13718_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 2.7e-17 94.7 206 33.5
SEGI_06354 Sequoiadendron giganteum HOM05D005255 ORTHO05D006276 1.0e-16 92.8 80 60.0
Pp3c12_23820 Physcomitrium patens HOM05D005255 ORTHO05D006276 1.1e-15 89.4 75 53.3
Ca_20730_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 5.5e-15 87.0 200 32.0
MELO3C034260.2 Cucumis melo HOM05D000018 ORTHO05D001766 4.0e-13 80.9 50 82.0
CBR_g18722 Chara braunii HOM05D002556 ORTHO05D003153 6.8e-13 80.1 188 28.2
BolSC21t60285H Brassica oleracea HOM05D005255 ORTHO05D021741 1.7e-11 75.5 62 53.2
Lsat_1_v5_gn_5_52200 Lactuca sativa HOM05D002556 ORTHO05D003153 2.0e-09 68.6 177 28.2
HanXRQChr13g0410841 Helianthus annuus HOM05D002556 ORTHO05D003153 5.9e-09 67.0 178 28.7
SMO364G0772 Selaginella moellendorffii HOM05D005255 ORTHO05D006276 1.0e-08 66.2 127 34.6
BcaB04g19772 Brassica carinata HOM05D005255 ORTHO05D021741 2.3e-08 65.1 49 57.1
TAR624G0532 Trochodendron aralioides HOM05D005255 ORTHO05D006276 2.9e-08 64.7 43 62.8
C03p67440 Brassica napus HOM05D005255 ORTHO05D021741 1.1e-07 62.8 49 55.1
SMO119G0101 Selaginella moellendorffii HOM05D002556 ORTHO05D003153 1.1e-07 62.8 171 26.3
CAN.G1237.19 Capsicum annuum HOM05D005255 ORTHO05D006276 1.5e-07 62.4 43 65.1
C03p67420 Brassica napus HOM05D005255 ORTHO05D021741 2.5e-07 61.6 49 55.1
RcHm_v2.0_Chr6g0292491 Rosa chinensis HOM05D002556 ORTHO05D003153 6.1e-06 57.0 178 27.0


User provided reference genes

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