Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014170.2 Cucumis melo HOM05D004409 ORTHO05D005292 1.4e-57 226.1 113 100.0
CsaV3_3G004710 Cucumis sativus L. HOM05D004409 ORTHO05D005292 3.1e-54 214.9 113 96.5
MELO3C013895.2 Cucumis melo HOM05D004409 ORTHO05D005292 9.1e-46 186.8 109 82.6
CsaV3_3G002240 Cucumis sativus L. HOM05D004409 ORTHO05D005292 4.5e-45 184.5 109 83.5
ClCG10G002150 Citrullus lanatus HOM05D004409 ORTHO05D005292 1.2e-42 176.4 102 85.3
Sed0027041 Sechium edule HOM05D004409 ORTHO05D005292 5.0e-36 154.5 104 72.1
ECA240G1407 Erigeron canadensis HOM05D004409 ORTHO05D005292 5.4e-30 134.4 93 66.7
THA.LOC104809923 Tarenaya hassleriana HOM05D004409 ORTHO05D005292 1.2e-29 133.3 112 59.8
Potri.003G084000 Populus trichocarpa HOM05D004409 ORTHO05D005292 2.7e-29 132.1 107 57.9
Sabra03G0054600 Salix brachista HOM05D004409 ORTHO05D005292 2.7e-29 132.1 107 58.9
CSS0044628 Camellia sinensis var. sinensis HOM05D004409 ORTHO05D005292 1.3e-28 129.8 113 53.1
Ciclev10022946m.g Citrus clementina HOM05D004409 ORTHO05D005292 1.7e-28 129.4 108 56.5
Actinidia31492 Actinidia chinensis HOM05D004409 ORTHO05D005292 2.3e-28 129.0 107 55.1
GSVIVG01004835001 Vitis vinifera HOM05D004409 ORTHO05D005292 2.3e-28 129.0 105 55.2
Atru.chr9.1197 Acer truncatum HOM05D004409 ORTHO05D005292 3.8e-28 128.3 104 58.7
Dinv28881 Davidia involucrata HOM05D004409 ORTHO05D005292 1.9e-27 125.9 110 53.6
TWI60G0543 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 2.5e-27 125.6 105 56.2
DCAR_008327 Daucus carota HOM05D004409 ORTHO05D005292 3.3e-27 125.2 83 65.1
Gohir.D12G214900 Gossypium hirsutum HOM05D004409 ORTHO05D005292 3.3e-27 125.2 104 57.7
HanXRQChr13g0419061 Helianthus annuus HOM05D004409 ORTHO05D005292 4.3e-27 124.8 104 56.7
Aqoxy3G02644 Aquilegia oxysepala HOM05D004409 ORTHO05D005292 5.6e-27 124.4 85 62.4
Prupe.5G054600 Prunus persica HOM05D004409 ORTHO05D005292 7.3e-27 124.0 104 57.7
Duzib205G0528 Durio zibethinus HOM05D004409 ORTHO05D005292 9.5e-27 123.6 111 55.0
Actinidia10866 Actinidia chinensis HOM05D004409 ORTHO05D005292 1.2e-26 123.2 109 52.3
Gorai.008G230500 Gossypium raimondii HOM05D004409 ORTHO05D005292 1.2e-26 123.2 104 55.8
HanXRQChr03g0089681 Helianthus annuus HOM05D004409 ORTHO05D005292 1.2e-26 123.2 104 57.7
Ciclev10030379m.g Citrus clementina HOM05D004409 ORTHO05D005292 1.6e-26 122.9 83 61.4
Gohir.A12G212400 Gossypium hirsutum HOM05D004409 ORTHO05D005292 1.6e-26 122.9 104 55.8
CANSAT21G0737 Cannabis sativa HOM05D004409 ORTHO05D005292 2.1e-26 122.5 103 57.3
COL.COLO4_06685 Corchorus olitorius HOM05D004409 ORTHO05D005292 4.7e-26 121.3 97 56.7
HanXRQChr03g0089691 Helianthus annuus HOM05D004409 ORTHO05D005292 8.0e-26 120.6 103 60.2
QL12p008592 Quercus lobata HOM05D004409 ORTHO05D005292 8.0e-26 120.6 105 51.4
TAR636G0884 Trochodendron aralioides HOM05D004409 ORTHO05D005292 8.0e-26 120.6 115 53.0
Thecc.03G239100 Theobroma cacao HOM05D004409 ORTHO05D005292 1.0e-25 120.2 104 52.9
Lsat_1_v5_gn_6_94401 Lactuca sativa HOM05D004409 ORTHO05D005292 1.4e-25 119.8 103 60.2
Manes.01G089900 Manihot esculenta HOM05D004409 ORTHO05D005292 1.4e-25 119.8 105 54.3
Nitab4.5_0000185g0190 Nicotiana tabacum HOM05D004409 ORTHO05D005292 1.8e-25 119.4 111 50.5
CANSAT21G0033 Cannabis sativa HOM05D004409 ORTHO05D005292 2.3e-25 119.0 112 54.5
Lsat_1_v5_gn_6_94501 Lactuca sativa HOM05D004409 ORTHO05D005292 2.3e-25 119.0 107 52.3
Peaxi162Scf00102g00085 Petunia axillaris HOM05D004409 ORTHO05D005292 2.3e-25 119.0 107 52.3
DCAR_003519 Daucus carota HOM05D004409 ORTHO05D005292 4.0e-25 118.2 83 61.4
GSVIVG01004822001 Vitis vinifera HOM05D004409 ORTHO05D005292 6.8e-25 117.5 100 53.0
GSVIVG01004827001 Vitis vinifera HOM05D004409 ORTHO05D005292 6.8e-25 117.5 100 53.0
ATR1136G211 Amborella trichopoda HOM05D004409 ORTHO05D005292 1.2e-24 116.7 110 55.5
ECA240G0589 Erigeron canadensis HOM05D004409 ORTHO05D005292 1.2e-24 116.7 100 54.0
Duzib068G1042 Durio zibethinus HOM05D004409 ORTHO05D005292 2.6e-24 115.5 103 53.4
Cfa012334 Carpinus fangiana HOM05D004409 ORTHO05D005292 3.4e-24 115.2 103 51.5
Cc08_g11210 Coffea canephora HOM05D004409 ORTHO05D005292 3.4e-24 115.2 98 52.0
GSVIVG01004832001 Vitis vinifera HOM05D004409 ORTHO05D005292 4.4e-24 114.8 85 55.3
GSVIVG01004836001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.3e-23 113.2 105 50.5
Thecc.03G144900 Theobroma cacao HOM05D004409 ORTHO05D005292 1.7e-23 112.8 110 47.3
HanXRQChr13g0418291 Helianthus annuus HOM05D004409 ORTHO05D005292 2.2e-23 112.5 110 53.6
Ciclev10022894m.g Citrus clementina HOM05D004409 ORTHO05D005292 2.9e-23 112.1 114 49.1
Hma1.2p1_3159F.1_g333389 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 2.9e-23 112.1 110 49.1
Atru.chr9.1196 Acer truncatum HOM05D004409 ORTHO05D005292 3.7e-23 111.7 85 56.5
Ciclev10033339m.g Citrus clementina HOM05D004409 ORTHO05D005292 3.7e-23 111.7 84 59.5
Duzib068G0789 Durio zibethinus HOM05D004409 ORTHO05D005292 4.9e-23 111.3 101 52.5
Cfa012333 Carpinus fangiana HOM05D004409 ORTHO05D005292 8.3e-23 110.5 108 49.1
Thecc.03G144800 Theobroma cacao HOM05D004409 ORTHO05D005292 8.3e-23 110.5 110 48.2
TAR375G0484 Trochodendron aralioides HOM05D004409 ORTHO05D005292 8.3e-23 110.5 111 46.8
Actinidia01026 Actinidia chinensis HOM05D004409 ORTHO05D005292 1.1e-22 110.2 103 47.6
Atru.chr6.1971 Acer truncatum HOM05D004409 ORTHO05D005292 1.4e-22 109.8 102 49.0
Gohir.D13G124300 Gossypium hirsutum HOM05D004409 ORTHO05D005292 1.4e-22 109.8 106 49.1
Peaxi162Scf00391g00715 Petunia axillaris HOM05D004409 ORTHO05D005292 1.4e-22 109.8 99 53.5
TWI39G0462 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 1.4e-22 109.8 115 47.8
GSVIVG01004838001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.4e-22 109.8 95 53.7
COL.COLO4_37301 Corchorus olitorius HOM05D004409 ORTHO05D005292 1.8e-22 109.4 103 52.4
Dinv34530 Davidia involucrata HOM05D004409 ORTHO05D005292 2.4e-22 109.0 109 45.0
Duzib205G0410 Durio zibethinus HOM05D004409 ORTHO05D005292 3.2e-22 108.6 101 50.5
FAN10G4140 Fragaria x ananassa HOM05D004409 ORTHO05D005292 3.2e-22 108.6 102 49.0
Thecc.03G144700 Theobroma cacao HOM05D004409 ORTHO05D005292 3.2e-22 108.6 102 51.0
TWI39G0310 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 4.1e-22 108.2 115 47.0
ECA240G4009 Erigeron canadensis HOM05D004409 ORTHO05D005292 5.4e-22 107.8 91 54.9
Migut.H01906 Erythranthe guttata HOM05D004409 ORTHO05D005292 5.4e-22 107.8 102 48.0
COL.COLO4_21695 Corchorus olitorius HOM05D004409 ORTHO05D005292 7.0e-22 107.5 84 54.8
TWI39G0193 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 7.0e-22 107.5 115 46.1
FvH4_7g26430 Fragaria vesca HOM05D004409 ORTHO05D005292 9.2e-22 107.1 102 47.1
PGR142G3629 Punica granatum HOM05D004409 ORTHO05D005292 9.2e-22 107.1 103 51.5
RcHm_v2.0_Chr1g0372991 Rosa chinensis HOM05D004409 ORTHO05D005292 9.2e-22 107.1 109 45.9
HanXRQChr13g0419051 Helianthus annuus HOM05D004409 ORTHO05D005292 1.2e-21 106.7 104 48.1
Hma1.2p1_1014F.1_g247850 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 1.2e-21 106.7 108 48.1
TWI39G0819 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 1.2e-21 106.7 95 53.7
EL10Ac1g00121 Beta vulgaris HOM05D004409 ORTHO05D005292 1.6e-21 106.3 102 49.0
PGSC0003DMG400026212 Solanum tuberosum HOM05D004409 ORTHO05D005292 1.6e-21 106.3 106 50.0
DCAR_005587 Daucus carota HOM05D004409 ORTHO05D005292 2.0e-21 105.9 100 55.0
PGR042G3450 Punica granatum HOM05D004409 ORTHO05D005292 2.0e-21 105.9 112 44.6
RcHm_v2.0_Chr1g0328141 Rosa chinensis HOM05D004409 ORTHO05D005292 2.0e-21 105.9 109 45.0
Hund27103 Selenicereus undatus HOM05D004409 ORTHO05D005292 2.0e-21 105.9 112 46.4
GSVIVG01013894001 Vitis vinifera HOM05D004409 ORTHO05D005292 4.6e-21 104.8 88 53.4
FAN01G0604 Fragaria x ananassa HOM05D004409 ORTHO05D005292 5.9e-21 104.4 102 48.0
MSTRG.27238 Avicennia marina HOM05D004409 ORTHO05D005292 7.8e-21 104.0 106 50.0
CANSAT56G2887 Cannabis sativa HOM05D004409 ORTHO05D005292 7.8e-21 104.0 103 46.6
GSVIVG01013816001 Vitis vinifera HOM05D004409 ORTHO05D005292 7.8e-21 104.0 88 52.3
Dinv25140 Davidia involucrata HOM05D004409 ORTHO05D005292 1.0e-20 103.6 107 46.7
Migut.H01907 Erythranthe guttata HOM05D004409 ORTHO05D005292 1.0e-20 103.6 101 47.5
FAN10G3781 Fragaria x ananassa HOM05D004409 ORTHO05D005292 1.3e-20 103.2 113 46.9
CAN.G845.22 Capsicum annuum HOM05D004409 ORTHO05D005292 1.7e-20 102.8 108 46.3
FAN03G2468 Fragaria x ananassa HOM05D004409 ORTHO05D005292 1.7e-20 102.8 110 45.5
TAR375G0026 Trochodendron aralioides HOM05D004409 ORTHO05D005292 1.7e-20 102.8 112 47.3
FvH4_7g26400 Fragaria vesca HOM05D004409 ORTHO05D005292 2.3e-20 102.4 113 46.0
RcHm_v2.0_Chr1g0372951 Rosa chinensis HOM05D004409 ORTHO05D005292 2.3e-20 102.4 111 46.8
Aqoxy6G00065 Aquilegia oxysepala HOM05D004409 ORTHO05D005292 3.9e-20 101.7 101 47.5
Eucgr.K00114 Eucalyptus grandis HOM05D004409 ORTHO05D005292 3.9e-20 101.7 79 53.2
Prupe.7G057100 Prunus persica HOM05D004409 ORTHO05D005292 6.6e-20 100.9 105 47.6
TAR375G0498 Trochodendron aralioides HOM05D004409 ORTHO05D005292 6.6e-20 100.9 89 50.6
GSVIVG01024506001 Vitis vinifera HOM05D004409 ORTHO05D005292 6.6e-20 100.9 103 47.6
COL.COLO4_32251 Corchorus olitorius HOM05D004409 ORTHO05D005292 8.6e-20 100.5 105 47.6
CANSAT56G4079 Cannabis sativa HOM05D004409 ORTHO05D005292 1.1e-19 100.1 102 45.1
Haze_08359 Corylus avellana HOM05D004409 ORTHO05D005292 1.1e-19 100.1 99 53.5
FAN06G5092 Fragaria x ananassa HOM05D004409 ORTHO05D005292 1.1e-19 100.1 97 45.4
CANSAT56G0658 Cannabis sativa HOM05D004409 ORTHO05D005292 1.5e-19 99.8 102 45.1
Cpa.g.sc13.213 Carica papaya HOM05D004409 ORTHO05D005292 1.9e-19 99.4 108 43.5
ATR1136G026 Amborella trichopoda HOM05D004409 ORTHO05D005292 2.5e-19 99.0 95 44.2
RcHm_v2.0_Chr1g0328171 Rosa chinensis HOM05D004409 ORTHO05D005292 2.5e-19 99.0 112 44.6
CANSAT56G2756 Cannabis sativa HOM05D004409 ORTHO05D005292 3.3e-19 98.6 102 44.1
COL.COLO4_37302 Corchorus olitorius HOM05D004409 ORTHO05D005292 3.3e-19 98.6 102 44.1
SGA_v2.0_scaffold91G28102 Striga asiatica HOM05D004409 ORTHO05D005292 4.3e-19 98.2 103 46.6
GSVIVG01013815001 Vitis vinifera HOM05D004409 ORTHO05D005292 4.3e-19 98.2 105 47.6
Actinidia25914 Actinidia chinensis HOM05D004409 ORTHO05D005292 5.6e-19 97.8 111 41.4
Dinv28880 Davidia involucrata HOM05D001887 ORTHO05D003756 7.3e-19 97.4 101 44.6
ATR1136G215 Amborella trichopoda HOM05D004409 ORTHO05D005292 9.5e-19 97.1 105 41.9
Cc06_g12260 Coffea canephora HOM05D004409 ORTHO05D005292 9.5e-19 97.1 107 44.9
Oeu019420.1 Olea europaea HOM05D004409 ORTHO05D005292 9.5e-19 97.1 102 48.0
CAN.G572.17 Capsicum annuum HOM05D004409 ORTHO05D005292 1.2e-18 96.7 99 49.5
Hma1.2p1_1014F.1_g247840 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 1.2e-18 96.7 108 44.4
FAN17G1151 Fragaria x ananassa HOM05D004409 ORTHO05D005292 1.6e-18 96.3 111 44.1
Thecc.08G189000 Theobroma cacao HOM05D004409 ORTHO05D005292 1.6e-18 96.3 96 44.8
GSVIVG01024502001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.1e-17 93.6 105 46.7
Oeu056339.1 Olea europaea HOM05D004409 ORTHO05D005292 1.4e-17 93.2 109 41.3
Thecc.07G180600 Theobroma cacao HOM05D004409 ORTHO05D005292 2.3e-17 92.4 103 39.8
Ciclev10033338m.g Citrus clementina HOM05D004409 ORTHO05D005292 4.0e-17 91.7 96 45.8
Oeu006074.1 Olea europaea HOM05D004409 ORTHO05D005292 4.0e-17 91.7 105 42.9
MD07G1239800 Malus domestica HOM05D004409 ORTHO05D005292 5.2e-17 91.3 105 45.7
MD07G1239700 Malus domestica HOM05D004409 ORTHO05D005292 8.9e-17 90.5 105 44.8
GSVIVG01013825001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.2e-16 90.1 105 43.8
TAR375G0880 Trochodendron aralioides HOM05D004409 ORTHO05D005292 2.6e-16 89.0 103 45.6
Hma1.2p1_1014F.1_g247830 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 7.5e-16 87.4 99 44.4
MD07G1239500 Malus domestica HOM05D004409 ORTHO05D005292 7.5e-16 87.4 100 39.0
Aa31LG9G14800 Aethionema arabicum HOM05D004409 ORTHO05D005292 1.3e-15 86.7 102 42.2
THA.LOC104816486 Tarenaya hassleriana HOM05D004409 ORTHO05D005292 2.9e-15 85.5 97 42.3
Eucgr.K00115 Eucalyptus grandis HOM05D004409 ORTHO05D005292 2.4e-14 82.4 110 45.5
Migut.J00932 Erythranthe guttata HOM05D004409 ORTHO05D005292 7.0e-14 80.9 97 44.3
BcaC01g03728 Brassica carinata HOM05D004409 ORTHO05D005292 7.8e-13 77.4 97 40.2
BcaB04g18966 Brassica carinata HOM05D004409 ORTHO05D005292 2.3e-12 75.9 97 40.2
CAN.G572.18 Capsicum annuum HOM05D004409 ORTHO05D005292 3.9e-12 75.1 101 38.6
Gorai.013G138900 Gossypium raimondii HOM05D004409 ORTHO05D005292 3.9e-12 75.1 70 47.1
Sp6g08250 Schrenkiella parvula HOM05D004409 ORTHO05D005292 3.9e-12 75.1 102 37.3
ATR0745G048 Amborella trichopoda HOM05D004409 ORTHO05D005292 3.3e-11 72.0 106 35.8
A03p40420 Brassica napus HOM05D004409 ORTHO05D005292 3.3e-11 72.0 92 39.1
BolC3t17205H Brassica oleracea HOM05D004409 ORTHO05D005292 3.3e-11 72.0 92 39.1
BraA03t13197Z Brassica rapa HOM05D004409 ORTHO05D005292 3.3e-11 72.0 92 39.1
C03p49230 Brassica napus HOM05D004409 ORTHO05D005292 5.6e-11 71.2 94 37.2
Cfa012335 Carpinus fangiana HOM05D004409 ORTHO05D005292 5.6e-11 71.2 100 40.0
Carub.0006s2782 Capsella rubella HOM05D004409 ORTHO05D005292 1.2e-10 70.1 88 42.0
CARHR260260 Cardamine hirsuta HOM05D004409 ORTHO05D005292 2.1e-10 69.3 98 36.7
Aa31sc407G10 Aethionema arabicum HOM05D002739 ORTHO05D002877 1.2e-08 63.5 111 35.1
CARHR241650 Cardamine hirsuta HOM05D002739 ORTHO05D002877 1.4e-06 56.6 114 35.1
Dinv36202 Davidia involucrata HOM05D002739 ORTHO05D002877 1.9e-06 56.2 57 36.8
FvH4_3g29300 Fragaria vesca HOM05D002739 ORTHO05D002877 1.9e-06 56.2 106 26.4
Sp7g31290 Schrenkiella parvula HOM05D002739 ORTHO05D002877 1.9e-06 56.2 112 32.1
BcaB03g12793 Brassica carinata HOM05D002739 ORTHO05D002877 2.4e-06 55.8 112 33.0
Thhalv10026604m.g Eutrema salsugineum HOM05D002739 ORTHO05D002877 2.4e-06 55.8 109 30.3
Prupe.2G028300 Prunus persica HOM05D002739 ORTHO05D002877 2.4e-06 55.8 104 34.6
MD02G1296300 Malus domestica HOM05D002739 ORTHO05D002877 4.1e-06 55.1 103 30.1
PSO384G3631 Papaver somniferum HOM05D002739 ORTHO05D002877 4.1e-06 55.1 92 32.6
BcaC01g00985 Brassica carinata HOM05D002739 ORTHO05D002877 7.1e-06 54.3 106 30.2
RcHm_v2.0_Chr7g0218541 Rosa chinensis HOM05D002739 ORTHO05D002877 9.2e-06 53.9 102 29.4
SMO145G0015 Selaginella moellendorffii HOM05D051947 ORTHO05D002877 9.2e-06 53.9 89 28.1
SMO145G0105 Selaginella moellendorffii HOM05D051947 ORTHO05D002877 9.2e-06 53.9 89 28.1


User provided reference genes

Program Settings