Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014124.2 Cucumis melo HOM05D006092 ORTHO05D007508 2.3e-79 298.9 158 100.0
CsaV3_3G004330 Cucumis sativus L. HOM05D006092 ORTHO05D007508 6.3e-77 290.8 157 96.8
ClCG10G004510 Citrullus lanatus HOM05D006092 ORTHO05D007508 2.2e-74 282.3 157 94.3
Sed0026101 Sechium edule HOM05D006092 ORTHO05D007508 9.7e-62 240.4 154 81.8
Cfa016959 Carpinus fangiana HOM05D006092 ORTHO05D007508 2.5e-57 225.7 161 77.6
MD03G1042800 Malus domestica HOM05D006092 ORTHO05D007508 4.2e-57 224.9 161 79.5
QL08p000538 Quercus lobata HOM05D006092 ORTHO05D007508 2.7e-56 222.2 162 75.3
Prupe.6G035200 Prunus persica HOM05D006092 ORTHO05D007508 4.7e-56 221.5 163 77.9
Atru.chr2.3894 Acer truncatum HOM05D006092 ORTHO05D007508 1.8e-55 219.5 156 74.4
RcHm_v2.0_Chr5g0074661 Rosa chinensis HOM05D006092 ORTHO05D007508 3.0e-55 218.8 163 76.1
FAN25G2470 Fragaria x ananassa HOM05D006092 ORTHO05D007508 6.7e-55 217.6 163 75.5
Cpa.g.sc12.69 Carica papaya HOM05D006092 ORTHO05D007508 8.8e-55 217.2 159 74.8
Thecc.07G001800 Theobroma cacao HOM05D006092 ORTHO05D007508 1.1e-54 216.9 158 76.6
FvH4_3g41620 Fragaria vesca HOM05D006092 ORTHO05D007508 2.6e-54 215.7 163 75.5
FAN11G0712 Fragaria x ananassa HOM05D006092 ORTHO05D007508 2.6e-54 215.7 163 75.5
CANSAT11G0425 Cannabis sativa HOM05D006092 ORTHO05D007508 2.2e-53 212.6 164 75.6
Haze_09914 Corylus avellana HOM05D006092 ORTHO05D007508 6.3e-53 211.1 160 73.8
GSVIVG01014842001 Vitis vinifera HOM05D006092 ORTHO05D007508 8.2e-53 210.7 161 74.5
Glyma.04G112800 Glycine max HOM05D006092 ORTHO05D007508 1.8e-52 209.5 162 71.0
Oeu013004.1 Olea europaea HOM05D006092 ORTHO05D007508 2.4e-52 209.1 153 73.2
Phvul.005G004000 Phaseolus vulgaris HOM05D006092 ORTHO05D007508 3.1e-52 208.8 160 71.2
PGR031G3987 Punica granatum HOM05D006092 ORTHO05D007508 3.1e-52 208.8 158 72.8
Ciclev10009769m.g Citrus clementina HOM05D006092 ORTHO05D007508 4.1e-52 208.4 158 74.1
EL10Ac3g07451 Beta vulgaris HOM05D006092 ORTHO05D007508 9.1e-52 207.2 161 68.9
Lj3g0000125 Lotus japonicus HOM05D006092 ORTHO05D007508 9.1e-52 207.2 160 71.9
Potri.011G168700 Populus trichocarpa HOM05D006092 ORTHO05D007508 9.1e-52 207.2 143 76.9
SalBow8G3834 Salvia bowleyana HOM05D006092 ORTHO05D007508 9.1e-52 207.2 138 79.0
PGSC0003DMG400022249 Solanum tuberosum HOM05D006092 ORTHO05D007508 9.1e-52 207.2 152 70.4
BcaC01g01548 Brassica carinata HOM05D006092 ORTHO05D007508 1.2e-51 206.8 161 72.7
BolC3t21605H Brassica oleracea HOM05D006092 ORTHO05D007508 1.2e-51 206.8 161 72.7
Sabra11G0138000 Salix brachista HOM05D006092 ORTHO05D007508 1.2e-51 206.8 131 80.2
Sed0012341 Sechium edule HOM05D006092 ORTHO05D007508 1.2e-51 206.8 134 78.4
A08p00380 Brassica napus HOM05D006092 ORTHO05D007508 1.6e-51 206.5 162 72.2
BraA08t32097Z Brassica rapa HOM05D006092 ORTHO05D007508 1.6e-51 206.5 162 72.2
Nn1g07635 Nelumbo nucifera HOM05D006092 ORTHO05D007508 2.0e-51 206.1 167 70.7
A05p17350 Brassica napus HOM05D006092 ORTHO05D007508 2.7e-51 205.7 160 71.2
C03p93010 Brassica napus HOM05D006092 ORTHO05D007508 2.7e-51 205.7 161 72.0
BraA05t20631Z Brassica rapa HOM05D006092 ORTHO05D007508 2.7e-51 205.7 160 71.2
Carub.0001s4419 Capsella rubella HOM05D006092 ORTHO05D007508 3.5e-51 205.3 160 71.9
BcaC08g44210 Brassica carinata HOM05D006092 ORTHO05D007508 4.5e-51 204.9 161 72.0
BolC6t36815H Brassica oleracea HOM05D006092 ORTHO05D007508 4.5e-51 204.9 161 72.0
VMungo1080G0991 Vigna mungo HOM05D006092 ORTHO05D007508 4.5e-51 204.9 161 69.6
Sopen07g034330 Solanum pennellii HOM05D006092 ORTHO05D007508 5.9e-51 204.5 152 69.7
BcaB02g10807 Brassica carinata HOM05D006092 ORTHO05D007508 7.7e-51 204.1 164 70.1
BcaC08g43644 Brassica carinata HOM05D006092 ORTHO05D007508 7.7e-51 204.1 161 71.4
C06p10630 Brassica napus HOM05D006092 ORTHO05D007508 7.7e-51 204.1 161 71.4
BolC6t36143H Brassica oleracea HOM05D006092 ORTHO05D007508 7.7e-51 204.1 161 71.4
Solyc07g066150.1 Solanum lycopersicum HOM05D006092 ORTHO05D007508 7.7e-51 204.1 152 69.7
TWI39G1159 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 7.7e-51 204.1 160 70.0
BcaB04g16937 Brassica carinata HOM05D006092 ORTHO05D007508 1.0e-50 203.8 160 70.0
BcaB07g33193 Brassica carinata HOM05D006092 ORTHO05D007508 1.0e-50 203.8 163 70.6
C06p16180 Brassica napus HOM05D006092 ORTHO05D007508 1.0e-50 203.8 161 71.4
Oeu006265.1 Olea europaea HOM05D006092 ORTHO05D007508 1.0e-50 203.8 152 71.7
Sabra16G0320400 Salix brachista HOM05D006092 ORTHO05D007508 1.0e-50 203.8 153 73.2
THA.LOC104810303 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 1.3e-50 203.4 159 72.3
Potri.001G471900 Populus trichocarpa HOM05D006092 ORTHO05D007508 1.7e-50 203.0 151 72.2
SGA_v2.0_scaffold186G40234 Striga asiatica HOM05D006092 ORTHO05D007508 1.7e-50 203.0 136 78.7
Gohir.A13G128600 Gossypium hirsutum HOM05D006092 ORTHO05D007508 2.2e-50 202.6 156 69.9
A06p00060 Brassica napus HOM05D006092 ORTHO05D007508 2.9e-50 202.2 161 70.8
BraA06t23221Z Brassica rapa HOM05D006092 ORTHO05D007508 2.9e-50 202.2 161 70.8
AUR62020866 Chenopodium quinoa HOM05D006092 ORTHO05D007508 2.9e-50 202.2 107 91.6
Gohir.D13G132000 Gossypium hirsutum HOM05D006092 ORTHO05D007508 2.9e-50 202.2 156 69.9
PSO063G2976 Papaver somniferum HOM05D006092 ORTHO05D007508 2.9e-50 202.2 152 73.0
PSO782G4285 Papaver somniferum HOM05D006092 ORTHO05D007508 2.9e-50 202.2 152 73.0
Gorai.009G454900 Gossypium raimondii HOM05D006092 ORTHO05D007508 3.8e-50 201.8 159 69.2
Manes.01G006400 Manihot esculenta HOM05D006092 ORTHO05D007508 5.0e-50 201.4 157 72.0
Glyma.06G321900 Glycine max HOM05D006092 ORTHO05D007508 6.5e-50 201.1 163 68.1
Gohir.A04G001100 Gossypium hirsutum HOM05D006092 ORTHO05D007508 6.5e-50 201.1 159 69.2
TWI38G1372 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 6.5e-50 201.1 160 68.8
CDE05G1532 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 8.5e-50 200.7 161 67.7
Gorai.013G148000 Gossypium raimondii HOM05D006092 ORTHO05D007508 8.5e-50 200.7 156 69.2
CDE11G0224 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 1.5e-49 199.9 161 67.1
Eucgr.F03646 Eucalyptus grandis HOM05D006092 ORTHO05D007508 1.5e-49 199.9 161 69.6
Psat5g231800 Pisum sativum HOM05D006092 ORTHO05D007508 1.9e-49 199.5 159 68.6
THA.LOC104822703 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 1.9e-49 199.5 161 70.2
AL1G63740 Arabidopsis lyrata HOM05D006092 ORTHO05D007508 3.2e-49 198.7 160 69.4
AT1G55670 Arabidopsis thaliana HOM05D006092 ORTHO05D007508 3.2e-49 198.7 159 69.8
Sc07g0002210 Simmondsia chinensis HOM05D006092 ORTHO05D007508 3.2e-49 198.7 157 68.2
AUR62018553 Chenopodium quinoa HOM05D006092 ORTHO05D007508 4.2e-49 198.4 104 92.3
TPR.G16714 Trifolium pratense HOM05D006092 ORTHO05D007508 4.2e-49 198.4 164 67.1
unitig_37.g11908 Utricularia gibba HOM05D006092 ORTHO05D007508 4.2e-49 198.4 157 70.7
CARHR045350 Cardamine hirsuta HOM05D006092 ORTHO05D007508 5.5e-49 198.0 161 70.8
Rhsim04G0007400 Rhododendron simsii HOM05D006092 ORTHO05D007508 5.5e-49 198.0 138 76.8
Zm00001eb316290 Zea mays HOM05D006092 ORTHO05D007508 5.5e-49 198.0 129 76.0
Thhalv10011835m.g Eutrema salsugineum HOM05D006092 ORTHO05D007508 7.2e-49 197.6 162 69.1
Ah.04g149440 Amaranthus hybridus HOM05D006092 ORTHO05D007508 9.4e-49 197.2 160 70.0
CAN.G623.73 Capsicum annuum HOM05D006092 ORTHO05D007508 9.4e-49 197.2 156 68.6
Aa31LG10G560 Aethionema arabicum HOM05D006092 ORTHO05D007508 1.2e-48 196.8 156 69.9
CARHR087970 Cardamine hirsuta HOM05D006092 ORTHO05D007508 1.6e-48 196.4 159 71.7
Lsat_1_v5_gn_5_381 Lactuca sativa HOM05D006092 ORTHO05D007508 2.1e-48 196.1 139 77.7
ECA246G4981 Erigeron canadensis HOM05D006092 ORTHO05D007508 2.7e-48 195.7 151 71.5
Lalb_Chr18g0048631 Lupinus albus HOM05D006092 ORTHO05D007508 2.7e-48 195.7 163 66.3
Nitab4.5_0000611g0110 Nicotiana tabacum HOM05D006092 ORTHO05D007508 3.6e-48 195.3 140 75.7
Lj8P183T26 Lonicera japonica HOM05D006092 ORTHO05D007508 6.1e-48 194.5 105 90.5
unitig_92.g28271 Utricularia gibba HOM05D006092 ORTHO05D007508 1.0e-47 193.7 132 78.8
COL.COLO4_07787 Corchorus olitorius HOM05D006092 ORTHO05D007508 1.4e-47 193.4 119 81.5
HanXRQChr08g0232881 Helianthus annuus HOM05D006092 ORTHO05D007508 1.4e-47 193.4 148 71.6
HanXRQChr05g0160351 Helianthus annuus HOM05D006092 ORTHO05D007508 1.8e-47 193.0 130 77.7
Nitab4.5_0001622g0160 Nicotiana tabacum HOM05D006092 ORTHO05D007508 3.0e-47 192.2 153 68.0
arahy.Tifrunner.gnm1.ann1.4PD0PP Arachis hypogaea HOM05D006092 ORTHO05D007508 4.0e-47 191.8 164 66.5
Nitab4.5_0000611g0120 Nicotiana tabacum HOM05D006092 ORTHO05D007508 4.0e-47 191.8 153 68.0
Migut.M01583 Erythranthe guttata HOM05D006092 ORTHO05D007508 6.8e-47 191.0 153 68.0
MBI15_g47946_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 6.8e-47 191.0 164 64.0
Aqoxy4G02265 Aquilegia oxysepala HOM05D006092 ORTHO05D007508 2.0e-46 189.5 165 66.1
MBI14_g12737_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 2.6e-46 189.1 164 65.2
HPP92_022812 Vanilla planifolia HOM05D006092 ORTHO05D007508 1.3e-45 186.8 129 76.0
Os09g0481200 Oryza sativa ssp. japonica HOM05D006092 ORTHO05D007508 1.7e-45 186.4 159 64.2
ATR0751G135 Amborella trichopoda HOM05D006092 ORTHO05D007508 2.8e-45 185.7 162 64.8
MBI15_g47073_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 3.7e-45 185.3 146 67.8
Zm00001eb101660 Zea mays HOM05D006092 ORTHO05D007508 3.8e-42 175.3 160 61.2
Medtr3g010000 Medicago truncatula HOM05D006092 ORTHO05D007508 8.0e-40 167.5 164 60.4
Nitab4.5_0000611g0130 Nicotiana tabacum HOM05D006092 ORTHO05D007508 6.8e-39 164.5 147 63.3
Dinv40914 Davidia involucrata HOM05D006092 ORTHO05D007508 8.8e-39 164.1 135 66.7
SEGI_13197 Sequoiadendron giganteum HOM05D006092 ORTHO05D007508 8.8e-39 164.1 164 60.4
CiPaw.11G210500 Carya illinoinensis HOM05D006092 ORTHO05D007508 5.7e-38 161.4 163 60.1
SMO353G0046 Selaginella moellendorffii HOM05D006092 ORTHO05D007508 2.1e-32 142.9 105 65.7
Pp3c9_15440 Physcomitrium patens HOM05D006092 ORTHO05D007508 1.0e-31 140.6 163 49.7
Pp3c15_5850 Physcomitrium patens HOM05D006092 ORTHO05D007508 1.8e-31 139.8 135 57.0
AagrBONN_evm.TU.Sc2ySwM_228.5128 Anthoceros agrestis HOM05D006092 ORTHO05D007508 2.6e-30 136.0 117 59.8
Mapoly0038s0054 Marchantia polymorpha HOM05D006092 ORTHO05D007508 2.2e-29 132.9 161 49.7
Sp1g41280 Schrenkiella parvula HOM05D006092 ORTHO05D007508 1.2e-27 127.1 160 53.8
CBR_g28070 Chara braunii HOM05D006092 ORTHO05D007508 2.0e-27 126.3 160 46.2
TAR627G0509 Trochodendron aralioides HOM05D006092 ORTHO05D007508 7.3e-25 117.9 72 79.2
PGSC0003DMG400006702 Solanum tuberosum HOM05D006092 ORTHO05D007508 2.2e-21 106.3 122 51.6
EL10As5g23536 Beta vulgaris HOM05D006092 ORTHO05D007508 9.2e-20 100.9 55 89.1
EL10Ac3g06625 Beta vulgaris HOM05D006092 ORTHO05D007508 2.7e-19 99.4 53 90.6
EL10Ac5g10941 Beta vulgaris HOM05D006092 ORTHO05D007508 2.7e-19 99.4 53 90.6
PRCOL_00006984 Prasinoderma coloniale HOM05D006092 ORTHO05D007508 1.1e-17 94.0 90 52.2
MCO01G478 Micromonas commoda HOM05D006092 ORTHO05D007508 3.6e-16 89.0 99 50.5
Cre12.g560950 Chlamydomonas reinhardtii HOM05D006092 ORTHO05D007508 2.9e-13 79.3 122 37.7


User provided reference genes

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