Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014070.2 Cucumis melo HOM05D006736 ORTHO05D008459 1.6e-49 199.1 102 100.0
CsaV3_3G003890 Cucumis sativus L. HOM05D006736 ORTHO05D008459 8.5e-43 176.8 102 89.2
ClCG10G003900 Citrullus lanatus HOM05D006736 ORTHO05D008459 9.7e-39 163.3 102 80.4
ClCG10G004060 Citrullus lanatus HOM05D006736 ORTHO05D008459 9.7e-39 163.3 102 80.4
Sed0014616 Sechium edule HOM05D006736 ORTHO05D008459 1.3e-27 126.3 100 69.0
Cfa021889 Carpinus fangiana HOM05D006736 ORTHO05D008459 1.4e-16 89.7 95 48.4
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 4.0e-16 88.2 90 50.0
MELO3C024968.2 Cucumis melo HOM05D006736 ORTHO05D008459 1.5e-15 86.3 77 61.0
CiPaw.11G206800 Carya illinoinensis HOM05D006736 ORTHO05D008459 2.0e-15 85.9 99 50.5
ClCG09G021530 Citrullus lanatus HOM05D006736 ORTHO05D008459 2.6e-15 85.5 78 60.3
Medtr3g461010 Medicago truncatula HOM05D006736 ORTHO05D008459 5.8e-15 84.3 76 57.9
Phvul.006G059230 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 5.8e-15 84.3 94 48.9
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 7.5e-15 84.0 73 58.9
QL08p003180 Quercus lobata HOM05D006736 ORTHO05D008459 7.5e-15 84.0 101 48.5
CsaV3_7G023850 Cucumis sativus L. HOM05D006736 ORTHO05D008459 3.7e-14 81.6 77 55.8
Sed0023265 Sechium edule HOM05D006736 ORTHO05D008459 4.9e-14 81.3 74 59.5
Glyma.08G332400 Glycine max HOM05D006736 ORTHO05D008459 2.4e-13 79.0 109 42.2
VMungo0540G0896 Vigna mungo HOM05D006736 ORTHO05D008459 5.4e-13 77.8 77 51.9
Psat5g166560 Pisum sativum HOM05D006736 ORTHO05D008459 7.0e-13 77.4 104 48.1
TPR.G17947 Trifolium pratense HOM05D006736 ORTHO05D008459 7.0e-13 77.4 106 45.3
Thecc.07G008000 Theobroma cacao HOM05D006736 ORTHO05D008459 9.2e-13 77.0 98 46.9
Lalb_Chr20g0114121 Lupinus albus HOM05D006736 ORTHO05D008459 1.2e-12 76.6 97 43.3
Lalb_Chr15g0082301 Lupinus albus HOM05D006736 ORTHO05D008459 1.6e-12 76.3 97 44.3
Prupe.6G028200 Prunus persica HOM05D006736 ORTHO05D008459 2.7e-12 75.5 104 45.2
LjContig00081g0022969 Lotus japonicus HOM05D006736 ORTHO05D008459 1.0e-11 73.6 68 55.9
ClCG10G004500 Citrullus lanatus HOM05D006736 ORTHO05D008459 1.7e-11 72.8 87 52.9
Eucgr.F02027 Eucalyptus grandis HOM05D006736 ORTHO05D008459 1.7e-11 72.8 94 43.6
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 1.7e-11 72.8 50 70.0
RcHm_v2.0_Chr5g0075611 Rosa chinensis HOM05D006736 ORTHO05D008459 2.3e-11 72.4 86 46.5
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 3.0e-11 72.0 104 41.3
GSVIVG01014741001 Vitis vinifera HOM05D006736 ORTHO05D008459 3.0e-11 72.0 88 46.6
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 6.6e-11 70.9 86 50.0
Duzib268G0079 Durio zibethinus HOM05D006736 ORTHO05D008459 8.6e-11 70.5 98 43.9
Manes.05G200400 Manihot esculenta HOM05D006736 ORTHO05D008459 8.6e-11 70.5 88 51.1
Cpa.g.sc12.109 Carica papaya HOM05D006736 ORTHO05D008459 1.1e-10 70.1 79 48.1
Aqoxy4G01886 Aquilegia oxysepala HOM05D006736 ORTHO05D008459 1.5e-10 69.7 79 50.6
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 1.9e-10 69.3 79 44.3
TWI38G1827 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 1.9e-10 69.3 70 54.3
Sabra16G0244100 Salix brachista HOM05D006736 ORTHO05D008459 3.3e-10 68.6 99 46.5
Glyma.14G011700 Glycine max HOM05D006736 ORTHO05D008459 5.6e-10 67.8 94 44.7
Potri.001G371400 Populus trichocarpa HOM05D006736 ORTHO05D008459 5.6e-10 67.8 89 48.3
COL.COLO4_07740 Corchorus olitorius HOM05D006736 ORTHO05D008459 7.3e-10 67.4 92 46.7
Duzib170G0862 Durio zibethinus HOM05D006736 ORTHO05D008459 7.3e-10 67.4 86 44.2
FvH4_3g42280 Fragaria vesca HOM05D006736 ORTHO05D008459 7.3e-10 67.4 87 41.4
FAN11G0661 Fragaria x ananassa HOM05D006736 ORTHO05D008459 7.3e-10 67.4 87 41.4
FAN21G1732 Fragaria x ananassa HOM05D006736 ORTHO05D008459 7.3e-10 67.4 87 41.4
FAN25G3397 Fragaria x ananassa HOM05D006736 ORTHO05D008459 7.3e-10 67.4 87 41.4
EL10Ac4g07540 Beta vulgaris HOM05D006736 ORTHO05D008459 9.5e-10 67.0 93 45.2
FAN16G2066 Fragaria x ananassa HOM05D002691 ORTHO05D003304 9.5e-10 67.0 84 42.9
ATR0751G116 Amborella trichopoda HOM05D006736 ORTHO05D008459 1.2e-09 66.6 60 53.3
Carub.0003s1260 Capsella rubella HOM05D006736 ORTHO05D008459 1.2e-09 66.6 85 49.4
Hma1.2p1_0599F.1_g186970 Hydrangea macrophylla HOM05D006736 ORTHO05D008459 2.1e-09 65.9 73 45.2
CSS0010283 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 2.8e-09 65.5 81 45.7
AL3G25020 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 3.6e-09 65.1 84 48.8
TWI39G1297 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 6.2e-09 64.3 49 63.3
Ah.06g181490 Amaranthus hybridus HOM05D006736 ORTHO05D008459 8.0e-09 63.9 64 53.1
Ciclev10010675m.g Citrus clementina HOM05D006736 ORTHO05D008459 8.0e-09 63.9 84 48.8
Thhalv10021795m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 1.4e-08 63.2 84 48.8
Manes.01G003400 Manihot esculenta HOM05D006736 ORTHO05D008459 1.4e-08 63.2 72 48.6
Oeu036994.1 Olea europaea HOM05D006736 ORTHO05D008459 1.4e-08 63.2 95 42.1
AT3G13227 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 3.1e-08 62.0 84 46.4
Sp3g11420 Schrenkiella parvula HOM05D006736 ORTHO05D008459 3.1e-08 62.0 73 52.1
BcaB06g25478 Brassica carinata HOM05D006736 ORTHO05D008459 4.0e-08 61.6 81 48.1
BcaC05g29199 Brassica carinata HOM05D006736 ORTHO05D008459 4.0e-08 61.6 81 48.1
CARHR269350 Cardamine hirsuta HOM05D006736 ORTHO05D008459 4.0e-08 61.6 61 52.5
MBI14_g39127_MAGBIO Magnolia biondii HOM05D006736 ORTHO05D008459 4.0e-08 61.6 57 54.4
CARHR087850 Cardamine hirsuta HOM05D006736 ORTHO05D008459 8.9e-08 60.5 79 49.4
ECA234G2793 Erigeron canadensis HOM05D006736 ORTHO05D008459 8.9e-08 60.5 91 42.9
Sopen12g002170 Solanum pennellii HOM05D006736 ORTHO05D008459 1.2e-07 60.1 53 54.7
Atru.chr2.3834 Acer truncatum HOM05D006736 ORTHO05D008459 1.5e-07 59.7 87 48.3
Peaxi162Scf01164g00020 Petunia axillaris HOM05D006736 ORTHO05D008459 1.5e-07 59.7 53 60.4
SGA_v2.0_scaffold49G18393 Striga asiatica HOM05D006736 ORTHO05D008459 1.5e-07 59.7 59 55.9
Migut.M00067 Erythranthe guttata HOM05D006736 ORTHO05D008459 2.0e-07 59.3 54 57.4
Gohir.A01G093700 Gossypium hirsutum HOM05D006736 ORTHO05D008459 2.0e-07 59.3 70 40.0
Sabra11G0088600 Salix brachista HOM05D006736 ORTHO05D008459 2.0e-07 59.3 101 39.6
arahy.Tifrunner.gnm1.ann1.FR49Y0 Arachis hypogaea HOM05D006736 ORTHO05D008459 2.6e-07 58.9 52 63.5
arahy.Tifrunner.gnm1.ann1.P4RFEM Arachis hypogaea HOM05D006736 ORTHO05D008459 2.6e-07 58.9 52 63.5
BcaC01g04005 Brassica carinata HOM05D006736 ORTHO05D008459 2.6e-07 58.9 80 46.2
A03p38090 Brassica napus HOM05D006736 ORTHO05D008459 2.6e-07 58.9 80 46.2
C03p46220 Brassica napus HOM05D006736 ORTHO05D008459 2.6e-07 58.9 80 46.2
BolC5t34141H Brassica oleracea HOM05D006736 ORTHO05D008459 2.6e-07 58.9 82 46.3
BraA03t12962Z Brassica rapa HOM05D006736 ORTHO05D008459 2.6e-07 58.9 80 46.2
THA.LOC104822717 Tarenaya hassleriana HOM05D006736 ORTHO05D008459 2.6e-07 58.9 108 41.7
BcaB04g18747 Brassica carinata HOM05D006736 ORTHO05D008459 4.4e-07 58.2 80 46.2
BcaB08g35964 Brassica carinata HOM05D006736 ORTHO05D008459 4.4e-07 58.2 48 58.3
BolC3t16893H Brassica oleracea HOM05D006736 ORTHO05D008459 4.4e-07 58.2 89 44.9
Aa31LG8G450 Aethionema arabicum HOM05D006736 ORTHO05D008459 5.8e-07 57.8 71 52.1
AT5G55980 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 5.8e-07 57.8 56 51.8
Gohir.D01G078200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 5.8e-07 57.8 70 40.0
Gorai.002G102800 Gossypium raimondii HOM05D006736 ORTHO05D008459 5.8e-07 57.8 70 40.0
MD03G1035000 Malus domestica HOM05D006736 ORTHO05D008459 5.8e-07 57.8 63 52.4
Phvul.008G281200 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 5.8e-07 57.8 63 54.0
A10p13210 Brassica napus HOM05D006736 ORTHO05D008459 7.5e-07 57.4 39 64.1
BraA10t43419Z Brassica rapa HOM05D006736 ORTHO05D008459 7.5e-07 57.4 39 64.1
CiPaw.06G067400 Carya illinoinensis HOM05D007247 ORTHO05D009208 7.5e-07 57.4 58 53.4
Peaxi162Scf00047g02119 Petunia axillaris HOM05D006736 ORTHO05D008459 7.5e-07 57.4 92 40.2
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 7.5e-07 57.4 53 60.4
Sopen07g023750 Solanum pennellii HOM05D006736 ORTHO05D008459 7.5e-07 57.4 53 60.4
PGR083G0815 Punica granatum HOM05D006736 ORTHO05D008459 9.8e-07 57.0 89 41.6
Solyc12g006220.3 Solanum lycopersicum HOM05D006736 ORTHO05D008459 9.8e-07 57.0 95 38.9
BolC9t57545H Brassica oleracea HOM05D006736 ORTHO05D008459 1.3e-06 56.6 38 63.2
Migut.H01277 Erythranthe guttata HOM05D006736 ORTHO05D008459 1.3e-06 56.6 73 47.9
Thhalv10015819m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 1.3e-06 56.6 76 44.7
Gohir.A13G130900 Gossypium hirsutum HOM05D006736 ORTHO05D008459 1.3e-06 56.6 98 43.9
Aa31LG3G11890 Aethionema arabicum HOM05D006736 ORTHO05D008459 1.7e-06 56.2 83 39.8
QL03p057801 Quercus lobata HOM05D007247 ORTHO05D009208 1.7e-06 56.2 59 52.5
C09p46970 Brassica napus HOM05D006736 ORTHO05D008459 2.2e-06 55.8 79 46.8
Haze_12254 Corylus avellana HOM05D007247 ORTHO05D009208 2.2e-06 55.8 47 59.6
Manes.12G022500 Manihot esculenta HOM05D007247 ORTHO05D009208 2.2e-06 55.8 54 51.9
Sp6g17830 Schrenkiella parvula HOM05D006736 ORTHO05D008459 2.2e-06 55.8 48 56.2
TAR629G1528 Trochodendron aralioides HOM05D007247 ORTHO05D009208 2.2e-06 55.8 78 42.3
AL8G31560 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 2.9e-06 55.5 56 50.0
DCAR_008749 Daucus carota HOM05D006736 ORTHO05D008459 2.9e-06 55.5 69 42.0
SGA_v2.0_scaffold73G24482 Striga asiatica HOM05D002257 ORTHO05D002417 2.9e-06 55.5 87 41.4
Atru.chr11.2143 Acer truncatum HOM05D007247 ORTHO05D009208 3.7e-06 55.1 51 56.9
Carub.0008s1632 Capsella rubella HOM05D006736 ORTHO05D008459 3.7e-06 55.1 54 51.9
Cfa009218 Carpinus fangiana HOM05D007247 ORTHO05D009208 3.7e-06 55.1 49 57.1
ECA236G2479 Erigeron canadensis HOM05D006736 ORTHO05D008459 3.7e-06 55.1 46 52.2
BcaC04g20175 Brassica carinata HOM05D006736 ORTHO05D008459 4.9e-06 54.7 79 46.8
Gorai.013G150500 Gossypium raimondii HOM05D006736 ORTHO05D008459 4.9e-06 54.7 98 43.9
Thecc.02G261000 Theobroma cacao HOM05D007247 ORTHO05D009208 6.4e-06 54.3 62 43.5
Aqoxy3G01230 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 8.3e-06 53.9 48 50.0
BcaB01g04378 Brassica carinata HOM05D006736 ORTHO05D008459 8.3e-06 53.9 38 60.5
CSS0024852 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 8.3e-06 53.9 55 52.7
CSS0048788 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 8.3e-06 53.9 55 52.7
Duzib251G0560 Durio zibethinus HOM05D007247 ORTHO05D009208 8.3e-06 53.9 73 42.5
Gohir.D13G134200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 8.3e-06 53.9 98 43.9
Lsat_1_v5_gn_5_122340 Lactuca sativa HOM05D006736 ORTHO05D008459 8.3e-06 53.9 77 42.9


User provided reference genes

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