Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 1.1e-59 233.0 115 100.0
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 3.9e-44 181.4 110 80.9
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 2.8e-42 175.3 110 75.5
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 3.9e-36 154.8 113 62.8
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 1.5e-35 152.9 113 61.9
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 9.6e-35 150.2 112 63.4
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 1.4e-33 146.4 112 61.6
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 1.8e-33 146.0 110 62.7
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 1.8e-33 146.0 112 61.6
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 2.4e-33 145.6 112 59.8
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 3.1e-33 145.2 112 61.6
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 3.1e-33 145.2 112 61.6
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 3.1e-33 145.2 112 61.6
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 4.0e-33 144.8 112 59.8
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 4.0e-33 144.8 111 60.4
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 4.0e-33 144.8 112 61.6
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 5.3e-33 144.4 112 60.7
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 5.3e-33 144.4 110 61.8
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 5.3e-33 144.4 112 59.8
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 6.9e-33 144.1 110 61.8
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 6.9e-33 144.1 112 60.7
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 6.9e-33 144.1 110 62.7
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 9.0e-33 143.7 111 63.1
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 1.2e-32 143.3 111 60.4
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 1.2e-32 143.3 112 59.8
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 1.5e-32 142.9 111 60.4
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 1.5e-32 142.9 111 61.3
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 1.5e-32 142.9 112 59.8
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 2.0e-32 142.5 111 60.4
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 2.0e-32 142.5 112 59.8
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 2.0e-32 142.5 110 60.0
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 2.0e-32 142.5 110 60.9
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 2.0e-32 142.5 112 61.6
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 2.6e-32 142.1 111 60.4
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 2.6e-32 142.1 112 60.7
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 3.4e-32 141.7 111 61.3
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 3.4e-32 141.7 110 60.9
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 3.4e-32 141.7 110 60.0
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 4.5e-32 141.4 113 57.5
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 5.8e-32 141.0 111 59.5
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 5.8e-32 141.0 111 59.5
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 5.8e-32 141.0 111 59.5
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 5.8e-32 141.0 110 60.9
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 5.8e-32 141.0 110 60.0
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 5.8e-32 141.0 110 61.8
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 7.6e-32 140.6 111 58.6
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 7.6e-32 140.6 113 60.2
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 1.0e-31 140.2 111 59.5
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 1.0e-31 140.2 111 58.6
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 1.3e-31 139.8 110 59.1
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 1.3e-31 139.8 110 60.9
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 1.3e-31 139.8 111 60.4
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 1.7e-31 139.4 111 59.5
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 1.7e-31 139.4 112 59.8
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 2.2e-31 139.0 112 58.9
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 2.2e-31 139.0 111 58.6
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 3.8e-31 138.3 112 58.0
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 3.8e-31 138.3 111 57.7
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 6.5e-31 137.5 111 61.3
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 6.5e-31 137.5 111 59.5
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 6.5e-31 137.5 110 58.2
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 8.4e-31 137.1 110 60.0
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 1.1e-30 136.7 110 59.1
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 1.4e-30 136.3 112 60.7
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 1.4e-30 136.3 113 57.5
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 1.4e-30 136.3 110 59.1
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 1.9e-30 136.0 111 57.7
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 1.9e-30 136.0 112 59.8
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 2.5e-30 135.6 110 56.4
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 3.2e-30 135.2 110 57.3
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 4.2e-30 134.8 112 57.1
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 5.5e-30 134.4 112 58.0
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 5.5e-30 134.4 113 57.5
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 5.5e-30 134.4 113 58.4
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 5.5e-30 134.4 112 58.9
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 7.1e-30 134.0 112 58.9
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 9.3e-30 133.7 112 56.2
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 9.3e-30 133.7 110 57.3
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 1.2e-29 133.3 110 56.4
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 1.6e-29 132.9 112 57.1
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 1.6e-29 132.9 112 58.0
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 1.6e-29 132.9 112 57.1
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 2.7e-29 132.1 110 58.2
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 3.5e-29 131.7 110 57.3
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 4.6e-29 131.3 109 59.6
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 4.6e-29 131.3 110 57.3
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 4.6e-29 131.3 110 58.2
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 6.0e-29 131.0 112 57.1
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 7.9e-29 130.6 110 55.5
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 7.9e-29 130.6 110 56.4
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 1.8e-28 129.4 105 58.1
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 3.9e-28 128.3 103 59.2
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 3.9e-28 128.3 105 58.1
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 3.9e-28 128.3 105 56.2
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 6.7e-28 127.5 105 56.2
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 1.1e-27 126.7 112 51.8
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 1.1e-27 126.7 112 51.8
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 1.1e-27 126.7 112 57.1
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 1.9e-27 125.9 110 54.5
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 1.9e-27 125.9 112 54.5
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 2.5e-27 125.6 115 54.8
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 9.6e-27 123.6 111 54.1
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 1.3e-26 123.2 111 53.2
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 2.8e-26 122.1 112 53.6
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 4.8e-26 121.3 111 53.2
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 8.2e-26 120.6 112 52.7
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 8.2e-26 120.6 94 60.6
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 1.8e-25 119.4 111 51.4
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 3.1e-25 118.6 93 59.1
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 4.1e-25 118.2 112 53.6
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 2.6e-24 115.5 96 58.3
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 3.4e-24 115.2 115 53.9
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 4.5e-24 114.8 112 50.9
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.3e-23 113.2 111 50.5
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 1.7e-23 112.8 73 64.4
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 3.8e-23 111.7 105 53.3
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 5.0e-23 111.3 74 64.9
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 5.0e-23 111.3 94 56.4
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 8.4e-23 110.5 120 47.5
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 8.4e-23 110.5 106 50.0
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 4.2e-22 108.2 109 51.4
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 1.6e-21 106.3 105 48.6
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 3.5e-21 105.1 113 50.4
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 6.1e-21 104.4 102 51.0
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 2.3e-20 102.4 110 54.5
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 6.7e-20 100.9 112 50.0
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 1.1e-19 100.1 75 58.7
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 9.7e-19 97.1 112 43.8
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 2.4e-17 92.4 94 52.1
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 2.4e-17 92.4 113 47.8
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 4.1e-17 91.7 71 62.0
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 6.9e-17 90.9 70 62.9
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.7e-15 86.3 70 51.4
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 3.8e-15 85.1 71 59.2
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.9e-14 82.8 64 60.9
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 7.9e-13 77.4 55 65.5
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 7.9e-13 77.4 71 52.1
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 4.3e-11 71.6 74 50.0
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 4.3e-11 71.6 40 80.0
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 6.3e-10 67.8 120 38.3
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 8.2e-10 67.4 92 42.4
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 2.4e-09 65.9 93 39.8
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 3.1e-09 65.5 120 37.5
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 3.1e-09 65.5 110 38.2
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 6.9e-09 64.3 107 39.3
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.9e-06 56.2 47 44.7
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 4.2e-06 55.1 45 53.3


User provided reference genes

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