Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 2.0e-91 339.0 161 100.0
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 1.2e-70 270.0 128 100.0
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 1.9e-65 252.7 128 91.4
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 2.1e-64 249.2 143 85.3
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 4.7e-64 248.1 125 92.0
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 4.0e-63 245.0 125 87.2
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 6.9e-63 244.2 125 88.0
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 1.2e-62 243.4 125 89.6
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 1.2e-62 243.4 125 88.8
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 2.0e-62 242.7 133 83.5
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 3.4e-62 241.9 125 89.6
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 3.4e-62 241.9 126 90.5
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 4.4e-62 241.5 126 89.7
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 7.6e-62 240.7 125 88.0
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 9.9e-62 240.4 125 89.6
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 1.3e-61 240.0 139 80.6
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 1.7e-61 239.6 125 87.2
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 2.2e-61 239.2 125 88.0
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 2.9e-61 238.8 125 86.4
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 3.8e-61 238.4 125 84.8
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 6.4e-61 237.7 138 80.4
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 6.4e-61 237.7 125 88.0
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 6.4e-61 237.7 124 87.9
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 6.4e-61 237.7 125 86.4
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 6.4e-61 237.7 125 87.2
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 6.4e-61 237.7 125 87.2
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 8.4e-61 237.3 125 88.0
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 8.4e-61 237.3 125 88.0
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 8.4e-61 237.3 125 88.0
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 8.4e-61 237.3 125 85.6
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 1.1e-60 236.9 125 87.2
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 1.1e-60 236.9 125 88.0
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 1.1e-60 236.9 125 86.4
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 1.4e-60 236.5 125 86.4
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 1.4e-60 236.5 125 87.2
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 1.9e-60 236.1 125 86.4
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 2.4e-60 235.7 125 88.0
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 2.4e-60 235.7 125 88.0
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 2.4e-60 235.7 126 85.7
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 4.2e-60 235.0 125 85.6
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 7.1e-60 234.2 125 85.6
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 9.3e-60 233.8 125 86.4
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 9.3e-60 233.8 125 86.4
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 2.1e-59 232.6 125 82.4
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 2.7e-59 232.3 125 84.8
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 2.7e-59 232.3 125 84.8
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 3.5e-59 231.9 125 83.2
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 3.5e-59 231.9 126 85.7
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 4.6e-59 231.5 127 82.7
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 4.6e-59 231.5 125 85.6
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 4.6e-59 231.5 125 85.6
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 4.6e-59 231.5 125 84.8
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 7.8e-59 230.7 125 84.0
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 7.8e-59 230.7 125 84.0
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 1.3e-58 229.9 124 83.9
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 1.3e-58 229.9 125 84.8
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.3e-58 229.9 125 84.8
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 1.7e-58 229.6 125 82.4
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 3.0e-58 228.8 125 84.8
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 3.9e-58 228.4 125 84.0
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 5.1e-58 228.0 125 82.4
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 5.1e-58 228.0 125 82.4
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 6.6e-58 227.6 125 84.0
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 8.7e-58 227.3 139 76.3
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 1.5e-57 226.5 125 83.2
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 1.9e-57 226.1 125 82.4
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 3.3e-57 225.3 126 82.5
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 3.3e-57 225.3 125 82.4
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 4.3e-57 224.9 125 84.0
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 5.6e-57 224.6 125 86.4
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 9.6e-57 223.8 125 82.4
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 1.3e-56 223.4 125 82.4
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 1.3e-56 223.4 126 81.7
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 1.6e-56 223.0 126 81.0
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 1.6e-56 223.0 125 81.6
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 1.6e-56 223.0 125 84.8
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 2.1e-56 222.6 125 81.6
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 2.1e-56 222.6 125 80.8
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 2.8e-56 222.2 126 82.5
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 3.6e-56 221.9 125 80.0
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 3.6e-56 221.9 125 81.6
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 3.6e-56 221.9 126 80.2
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 3.6e-56 221.9 125 81.6
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 3.6e-56 221.9 125 81.6
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 3.6e-56 221.9 125 80.0
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 4.8e-56 221.5 125 81.6
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 4.8e-56 221.5 125 81.6
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 6.2e-56 221.1 125 80.8
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 6.2e-56 221.1 125 80.8
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 6.2e-56 221.1 125 80.8
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 1.1e-55 220.3 125 80.8
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 1.1e-55 220.3 129 81.4
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 1.1e-55 220.3 125 83.2
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 1.4e-55 219.9 125 80.0
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 1.4e-55 219.9 113 87.6
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 3.1e-55 218.8 125 80.0
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 3.1e-55 218.8 125 80.0
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 4.0e-55 218.4 125 80.0
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 1.2e-54 216.9 125 79.2
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 3.4e-54 215.3 125 79.2
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 4.5e-54 214.9 107 94.4
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 1.3e-53 213.4 125 80.0
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 1.7e-53 213.0 126 79.4
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 1.9e-52 209.5 123 78.9
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 1.6e-51 206.5 125 74.4
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 6.0e-51 204.5 125 76.8
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 6.0e-51 204.5 125 76.8
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 1.8e-50 203.0 107 86.9
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 2.3e-50 202.6 107 86.9
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 8.7e-50 200.7 112 80.4
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 1.1e-49 200.3 107 87.9
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 3.3e-49 198.7 107 85.0
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 5.6e-49 198.0 95 92.6
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 7.4e-49 197.6 107 82.2
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 7.4e-49 197.6 107 84.1
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 7.4e-49 197.6 107 85.0
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 3.7e-48 195.3 104 86.5
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 3.7e-48 195.3 125 72.0
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 6.2e-48 194.5 107 80.4
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 1.1e-47 193.7 108 82.4
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 4.0e-47 191.8 93 91.4
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 5.3e-47 191.4 107 81.3
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 6.9e-47 191.0 93 90.3
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 1.7e-45 186.4 113 77.9
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 4.9e-45 184.9 108 80.6
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 8.4e-45 184.1 113 77.0
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 1.6e-43 179.9 112 75.0
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 2.7e-43 179.1 139 64.0
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 3.7e-40 168.7 104 72.1
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 6.9e-39 164.5 124 63.7
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 3.4e-38 162.2 125 64.0
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 1.7e-37 159.8 141 58.2
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 2.9e-37 159.1 122 59.8
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 3.2e-36 155.6 75 90.7
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 9.3e-36 154.1 125 61.6
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 9.7e-33 144.1 103 62.1
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 4.5e-30 135.2 79 78.5
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 6.5e-29 131.3 79 75.9
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 6.5e-29 131.3 75 81.3
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 6.1e-27 124.8 106 60.4
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 7.9e-27 124.4 125 52.8
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 2.5e-25 119.4 90 57.8
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.5e-25 119.4 86 65.1
RcHm_v2.0_Chr2g0112371 Rosa chinensis HOM05D005100 ORTHO05D005607 2.5e-25 119.4 66 81.8
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 5.7e-25 118.2 63 85.7
RcHm_v2.0_Chr2g0109601 Rosa chinensis HOM05D005100 ORTHO05D005607 1.3e-24 117.1 66 78.8
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 2.8e-24 115.9 108 59.3
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 2.0e-22 109.8 75 66.7
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 7.9e-19 97.8 97 52.6
CBR_g50946 Chara braunii HOM05D005100 ORTHO05D005607 5.1e-18 95.1 79 55.7
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 5.1e-18 95.1 63 73.0
RcHm_v2.0_Chr5g0051271 Rosa chinensis HOM05D005100 ORTHO05D005607 1.1e-17 94.0 72 65.3
MCO13G524 Micromonas commoda HOM05D005100 ORTHO05D005607 2.0e-17 93.2 103 47.6
Nitab4.5_0003531g0010 Nicotiana tabacum HOM05D005100 ORTHO05D005607 4.1e-15 85.5 43 90.7
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 2.8e-08 62.8 45 64.4
QL12p012843 Quercus lobata HOM05D005100 ORTHO05D005607 1.8e-07 60.1 42 66.7
SMO119G0354 Selaginella moellendorffii HOM05D005100 ORTHO05D005607 9.1e-07 57.8 95 36.8


User provided reference genes

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