Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 0.0e+00 2266.5 1177 100.0
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 0.0e+00 2121.3 1152 96.4
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 0.0e+00 1974.9 1176 88.0
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 0.0e+00 1691.4 1187 77.3
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 3.1e-277 959.1 1236 51.9
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 2.7e-273 946.0 1267 51.2
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 1.3e-272 943.7 1232 51.4
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 6.6e-272 941.4 1234 51.1
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 8.6e-272 941.0 1234 51.1
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 7.5e-268 927.9 1221 50.8
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 3.5e-257 892.5 1245 48.9
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 2.6e-252 876.3 1220 48.8
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 2.1e-249 866.7 1201 50.0
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 3.5e-249 865.9 1196 49.6
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 4.6e-249 865.5 1215 48.6
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 1.0e-248 864.4 1196 49.5
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 3.6e-246 855.9 1213 49.4
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 1.1e-245 854.4 1216 48.1
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 3.2e-242 842.8 1232 46.9
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 1.9e-239 833.6 1177 47.9
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 9.6e-239 831.2 1210 47.1
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 2.1e-238 830.1 1209 47.2
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 3.6e-238 829.3 1215 46.5
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 1.4e-237 827.4 1214 47.0
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 4.5e-236 822.4 1177 47.9
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 1.9e-234 817.0 1223 46.4
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 2.1e-233 813.5 1172 47.1
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 2.7e-233 813.1 1165 48.4
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 1.3e-232 810.8 1176 47.4
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 3.0e-232 809.7 1152 48.0
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 9.6e-231 804.7 1149 48.0
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 1.6e-230 803.9 1199 47.0
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 4.8e-230 802.4 1222 46.3
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 4.6e-225 785.8 1207 46.0
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 6.0e-225 785.4 1206 44.4
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 1.3e-224 784.3 1168 45.8
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 6.7e-224 781.9 1210 45.5
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 7.4e-223 778.5 1120 45.8
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 2.8e-222 776.5 1163 45.1
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 1.9e-218 763.8 1244 44.2
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 2.5e-218 763.5 1192 44.6
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 9.3e-218 761.5 1122 46.9
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 1.8e-216 757.3 1192 44.4
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 8.7e-216 755.0 1189 44.7
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 1.5e-215 754.2 1199 45.7
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 2.5e-215 753.4 1232 41.6
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 1.4e-213 747.7 1235 42.2
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 9.0e-213 745.0 1190 45.1
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 5.5e-210 735.7 1170 46.4
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 7.2e-210 735.3 1205 45.3
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 1.2e-209 734.6 1170 45.9
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 4.8e-206 722.6 1198 43.7
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 3.1e-205 719.9 1261 41.3
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 2.9e-203 713.4 1192 41.5
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 3.8e-203 713.0 1210 43.6
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 3.2e-202 709.9 1256 40.5
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 1.0e-200 704.9 1197 43.4
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 1.4e-200 704.5 1102 47.2
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 2.3e-200 703.7 1224 41.5
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 2.3e-192 677.2 961 46.3
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 4.4e-191 672.9 1220 41.6
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 9.1e-189 665.2 1108 41.3
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 2.6e-188 663.7 1114 42.7
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 4.5e-188 662.9 1194 42.3
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 1.6e-185 654.4 1198 40.0
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 4.7e-185 652.9 1217 40.9
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 5.7e-183 646.0 1208 40.4
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 7.5e-183 645.6 1234 41.1
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 9.8e-183 645.2 1206 41.9
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 4.1e-181 639.8 1147 42.3
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 1.2e-177 628.2 1123 41.9
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 7.5e-175 619.0 1231 40.3
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 2.7e-172 610.5 1156 41.4
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 2.5e-170 604.0 1104 40.6
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 4.0e-168 596.7 1307 38.0
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 7.5e-167 592.4 1209 37.7
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 1.7e-163 581.3 1165 39.1
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 1.5e-162 578.2 1117 40.6
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 9.5e-162 575.5 1140 39.6
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 4.1e-157 560.1 1124 37.9
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 1.6e-156 558.1 1184 39.2
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 1.6e-156 558.1 1207 37.0
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 3.5e-156 557.0 1164 37.8
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 2.3e-155 554.3 1151 39.5
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 3.0e-155 553.9 1090 38.5
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 3.6e-153 547.0 1125 39.0
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 8.9e-152 542.3 1192 38.3
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 2.9e-150 537.3 1127 39.3
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 2.9e-150 537.3 1127 39.3
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 8.3e-150 535.8 1197 38.3
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 1.4e-149 535.0 1118 38.7
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 1.9e-149 534.6 1118 38.7
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 1.2e-148 531.9 1192 39.7
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 4.6e-148 530.0 1190 38.2
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 6.2e-145 519.6 1127 37.4
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 8.1e-145 519.2 1104 36.4
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 1.4e-144 518.5 1138 38.7
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 1.4e-136 491.9 1039 37.8
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 1.0e-131 475.7 586 53.9
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.7e-126 458.4 599 49.9
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.8e-120 438.3 867 39.3
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 2.6e-119 434.5 566 53.7
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 2.1e-113 414.8 923 36.9
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 6.2e-113 413.3 794 39.0
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 7.2e-101 373.2 1211 32.2
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 2.5e-98 364.8 658 41.3
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 1.8e-96 358.6 469 46.3
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 1.8e-96 358.6 540 45.0
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 5.9e-95 353.6 575 44.2
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 2.1e-92 345.1 559 42.9
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 5.7e-90 337.0 518 45.4
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 1.8e-88 332.0 500 44.0
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 8.5e-86 323.2 333 56.5
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 5.1e-83 313.9 561 41.2
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 2.7e-76 291.6 403 49.4
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 5.3e-72 277.3 299 54.2
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 1.1e-61 243.0 494 38.5
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 2.2e-57 228.8 596 36.7
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 2.8e-52 211.8 493 37.5
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 1.2e-50 206.5 540 33.3
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 2.2e-49 202.2 534 32.8
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 8.3e-41 173.7 1014 27.1
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 5.4e-40 171.0 233 45.5
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 2.0e-39 169.1 480 34.2
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 1.0e-38 166.8 153 54.2
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 2.3e-38 165.6 714 27.6
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 1.2e-36 159.8 499 31.3
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 3.6e-36 158.3 353 35.4
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 7.5e-34 150.6 220 55.9
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 1.6e-31 142.9 507 31.6
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 6.0e-31 141.0 385 35.1
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 1.5e-29 136.3 243 38.3
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 2.1e-28 132.5 587 28.3
Potri.004G015001 Populus trichocarpa HOM05D002890 ORTHO05D005855 1.3e-25 123.2 251 35.9
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 3.9e-22 111.7 213 49.3
HPP92_025077 Vanilla planifolia HOM05D002890 ORTHO05D005855 6.6e-22 110.9 515 28.9
Nitab4.5_0002954g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 4.0e-19 101.7 128 44.5
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 5.8e-18 97.8 635 24.7
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 1.7e-14 86.3 79 54.4
Nitab4.5_0002954g0060 Nicotiana tabacum HOM05D002890 ORTHO05D005855 7.3e-13 80.9 110 61.8
SEGI_38924 Sequoiadendron giganteum HOM05D009358 ORTHO05D011087 5.8e-10 71.2 71 56.3
Nitab4.5_0000267g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.1e-08 67.0 239 29.7


User provided reference genes

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