Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 4.4e-75 285.0 203 100.0
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 1.1e-68 263.8 207 88.9
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 2.5e-62 242.7 203 81.3
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 1.7e-55 219.9 132 86.4
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 4.6e-40 168.7 138 65.9
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 8.7e-39 164.5 139 64.7
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 3.3e-38 162.5 134 65.7
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 5.6e-38 161.8 138 63.0
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 2.8e-37 159.5 136 64.7
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 2.8e-37 159.5 138 62.3
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 1.1e-36 157.5 142 62.7
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 3.1e-36 156.0 138 63.8
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 4.0e-36 155.6 140 65.0
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 1.2e-35 154.1 138 63.0
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 2.6e-35 152.9 140 60.7
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 2.6e-35 152.9 140 64.3
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 4.5e-35 152.1 141 58.9
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 1.7e-34 150.2 130 63.1
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 1.7e-34 150.2 139 56.8
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 4.9e-34 148.7 139 58.3
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 6.5e-34 148.3 159 55.3
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 6.5e-34 148.3 137 60.6
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 1.1e-33 147.5 135 60.7
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 2.5e-33 146.4 139 58.3
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 2.5e-33 146.4 139 57.6
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 7.1e-33 144.8 139 58.3
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 7.1e-33 144.8 136 61.0
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 9.3e-33 144.4 142 57.7
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 9.3e-33 144.4 140 59.3
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 1.2e-32 144.1 135 59.3
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 1.2e-32 144.1 130 61.5
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 1.2e-32 144.1 138 59.4
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 1.6e-32 143.7 136 61.8
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 2.1e-32 143.3 138 58.0
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 7.9e-32 141.4 129 61.2
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 7.9e-32 141.4 138 59.4
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 1.0e-31 141.0 140 56.4
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 1.3e-31 140.6 136 55.9
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 2.3e-31 139.8 138 56.5
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 3.0e-31 139.4 138 58.7
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 5.1e-31 138.7 138 55.8
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 5.1e-31 138.7 144 56.2
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 1.1e-30 137.5 133 57.1
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 1.1e-30 137.5 128 57.8
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 1.9e-30 136.7 139 61.2
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.9e-30 136.7 129 57.4
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 1.9e-30 136.7 140 53.6
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 3.3e-30 136.0 132 56.8
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 4.3e-30 135.6 138 57.2
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 4.3e-30 135.6 120 63.3
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 4.3e-30 135.6 141 53.9
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 7.4e-30 134.8 138 57.2
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 7.4e-30 134.8 139 56.1
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 7.4e-30 134.8 132 59.1
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 9.6e-30 134.4 139 57.6
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 1.3e-29 134.0 143 52.4
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 1.3e-29 134.0 125 58.4
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 1.3e-29 134.0 141 56.0
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 1.6e-29 133.7 128 59.4
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 2.1e-29 133.3 133 61.7
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 2.8e-29 132.9 138 54.3
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 3.7e-29 132.5 127 59.8
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 4.8e-29 132.1 130 57.7
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 4.8e-29 132.1 139 54.7
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 6.3e-29 131.7 137 55.5
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 6.3e-29 131.7 138 55.8
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 6.3e-29 131.7 136 55.1
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 6.3e-29 131.7 121 59.5
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 8.2e-29 131.3 144 51.4
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 1.1e-28 131.0 122 59.8
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 2.4e-28 129.8 138 57.2
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 5.3e-28 128.6 136 56.6
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 9.0e-28 127.9 133 53.4
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 1.2e-27 127.5 144 52.1
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 2.0e-27 126.7 143 51.7
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 3.4e-27 125.9 119 58.0
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 3.4e-27 125.9 137 55.5
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 4.5e-27 125.6 137 54.7
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 5.9e-27 125.2 136 55.9
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 1.7e-26 123.6 139 52.5
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 6.5e-26 121.7 136 53.7
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 1.1e-25 120.9 148 50.0
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.4e-25 120.6 134 53.0
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 1.9e-25 120.2 138 53.6
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 3.2e-25 119.4 137 54.0
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 9.3e-25 117.9 137 51.8
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 1.6e-24 117.1 141 50.4
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 1.6e-24 117.1 141 49.6
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 2.1e-24 116.7 142 51.4
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 3.5e-24 115.9 125 52.8
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 3.5e-24 115.9 115 59.1
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 3.5e-24 115.9 140 53.6
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 4.6e-24 115.5 136 50.0
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 4.6e-24 115.5 142 52.1
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 6.1e-24 115.2 141 49.6
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 6.1e-24 115.2 94 62.8
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 1.0e-23 114.4 146 50.0
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 1.3e-23 114.0 128 52.3
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 1.3e-23 114.0 95 62.1
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 2.3e-23 113.2 146 49.3
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 3.0e-23 112.8 142 47.2
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 1.1e-22 110.9 82 67.1
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 1.9e-22 110.2 142 45.1
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 4.3e-22 109.0 137 50.4
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 6.3e-21 105.1 119 50.4
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 6.3e-21 105.1 119 50.4
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 6.3e-21 105.1 119 50.4
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 1.1e-20 104.4 132 50.8
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 5.3e-20 102.1 138 46.4
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 6.9e-20 101.7 144 46.5
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 9.0e-20 101.3 132 50.0
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 1.5e-19 100.5 74 64.9
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 2.0e-19 100.1 131 48.1
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 2.0e-19 100.1 118 48.3
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 2.0e-19 100.1 118 48.3
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 2.0e-19 100.1 118 48.3
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 7.7e-19 98.2 119 48.7
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 1.0e-18 97.8 84 57.1
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 1.7e-18 97.1 118 49.2
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 1.7e-18 97.1 118 49.2
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 1.7e-18 97.1 139 45.3
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 1.7e-18 97.1 139 45.3
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 2.2e-18 96.7 140 47.9
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 2.9e-18 96.3 144 43.8
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 3.8e-18 95.9 72 62.5
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 6.5e-18 95.1 188 38.3
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 6.5e-18 95.1 139 44.6
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 1.1e-17 94.4 122 47.5
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 5.5e-17 92.0 82 57.3
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 7.2e-17 91.7 126 49.2
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 1.6e-16 90.5 123 45.5
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 1.6e-16 90.5 123 45.5
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 2.7e-16 89.7 125 44.8
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 3.6e-16 89.4 91 56.0
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 6.1e-16 88.6 83 54.2
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 7.9e-16 88.2 63 65.1
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 1.5e-14 84.0 151 43.0
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 2.0e-14 83.6 136 40.4
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 2.5e-14 83.2 64 65.6
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 4.3e-14 82.4 121 45.5
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 1.7e-13 80.5 60 65.0
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 1.5e-11 73.9 73 50.7
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 3.4e-11 72.8 47 76.6
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 4.5e-11 72.4 134 40.3
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.0e-10 71.2 58 60.3
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 1.4e-09 67.4 60 55.0
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 1.9e-09 67.0 119 41.2
SMO244G0085 Selaginella moellendorffii HOM05D004771 ORTHO05D005565 2.7e-08 63.2 98 41.8
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 6.1e-08 62.0 46 65.2
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 3.9e-07 59.3 60 48.3
CARHR045930 Cardamine hirsuta HOM05D004771 ORTHO05D005565 3.9e-07 59.3 85 41.2


User provided reference genes

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