Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C013860.2 Cucumis melo HOM05D007134 ORTHO05D009004 1.9e-189 665.6 321 100.0
CsaV3_3G001860 Cucumis sativus L. HOM05D007134 ORTHO05D009004 3.6e-172 608.2 302 96.4
ClCG10G001760 Citrullus lanatus HOM05D007134 ORTHO05D009004 2.0e-167 592.4 321 89.4
Sed0020644 Sechium edule HOM05D007134 ORTHO05D009004 5.1e-150 534.6 321 81.0
Cfa012416 Carpinus fangiana HOM05D007134 ORTHO05D009004 3.9e-126 455.3 311 69.1
Hma1.2p1_2785F.1_g328490 Hydrangea macrophylla HOM05D007134 ORTHO05D009004 3.3e-125 452.2 316 65.5
Hma1.2p1_0991F.1_g244990 Hydrangea macrophylla HOM05D007134 ORTHO05D009004 5.6e-125 451.4 310 66.8
CiPaw.11G091800 Carya illinoinensis HOM05D007134 ORTHO05D009004 4.8e-124 448.4 318 67.0
Atru.chr6.1744 Acer truncatum HOM05D007134 ORTHO05D009004 8.1e-124 447.6 307 68.4
Haze_08260 Corylus avellana HOM05D007134 ORTHO05D009004 5.3e-123 444.9 327 65.7
Thecc.03G230400 Theobroma cacao HOM05D007134 ORTHO05D009004 9.0e-123 444.1 297 69.4
TAR629G3531 Trochodendron aralioides HOM05D007134 ORTHO05D009004 9.0e-123 444.1 308 67.9
COL.COLO4_17065 Corchorus olitorius HOM05D007134 ORTHO05D009004 8.4e-121 437.6 296 67.9
Gohir.D12G211900 Gossypium hirsutum HOM05D007134 ORTHO05D009004 3.2e-120 435.6 297 66.7
Gorai.008G227500 Gossypium raimondii HOM05D007134 ORTHO05D009004 3.2e-120 435.6 297 66.7
Potri.001G144000 Populus trichocarpa HOM05D007134 ORTHO05D009004 5.5e-120 434.9 316 64.2
Duzib205G1618 Durio zibethinus HOM05D007134 ORTHO05D009004 1.6e-119 433.3 297 67.3
Actinidia03384 Actinidia chinensis HOM05D007134 ORTHO05D009004 2.3e-118 429.5 313 62.3
Dinv28939 Davidia involucrata HOM05D007134 ORTHO05D009004 3.9e-118 428.7 320 63.1
Manes.15G172000 Manihot esculenta HOM05D007134 ORTHO05D009004 6.7e-118 427.9 296 66.9
CSS0021568 Camellia sinensis var. sinensis HOM05D007134 ORTHO05D009004 1.5e-117 426.8 299 63.9
Prupe.5G039700 Prunus persica HOM05D007134 ORTHO05D009004 1.5e-117 426.8 314 63.4
Eucgr.E00292 Eucalyptus grandis HOM05D007134 ORTHO05D009004 2.5e-117 426.0 314 64.3
CANSAT21G0276 Cannabis sativa HOM05D007134 ORTHO05D009004 3.3e-117 425.6 305 66.2
Glyma.17G154600 Glycine max HOM05D007134 ORTHO05D009004 3.3e-117 425.6 316 63.9
Peaxi162Scf00006g04220 Petunia axillaris HOM05D007134 ORTHO05D009004 2.1e-116 422.9 298 64.4
GSVIVG01013189001 Vitis vinifera HOM05D007134 ORTHO05D009004 2.1e-116 422.9 290 67.9
Phvul.003G230000 Phaseolus vulgaris HOM05D007134 ORTHO05D009004 2.8e-116 422.5 295 64.7
Sabra01G0112400 Salix brachista HOM05D007134 ORTHO05D009004 1.1e-115 420.6 347 58.8
Glyma.05G112400 Glycine max HOM05D007134 ORTHO05D009004 1.8e-115 419.9 302 64.6
TWI81G0484 Tripterygium wilfordii HOM05D007134 ORTHO05D009004 1.2e-114 417.2 297 65.0
Solyc08g077090.3 Solanum lycopersicum HOM05D007134 ORTHO05D009004 1.5e-114 416.8 294 62.9
PGR042G2424 Punica granatum HOM05D007134 ORTHO05D009004 2.0e-114 416.4 300 64.0
Nitab4.5_0002931g0030 Nicotiana tabacum HOM05D007134 ORTHO05D009004 7.6e-114 414.5 295 63.1
Sopen08g025670 Solanum pennellii HOM05D007134 ORTHO05D009004 1.0e-113 414.1 293 63.1
Lj4g0007831 Lotus japonicus HOM05D007134 ORTHO05D009004 2.2e-113 412.9 299 63.9
Ca_22068_v3 Cicer arietinum L. HOM05D007134 ORTHO05D009004 4.9e-113 411.8 315 61.6
Ciclev10032247m.g Citrus clementina HOM05D007134 ORTHO05D009004 4.9e-113 411.8 294 65.3
RcHm_v2.0_Chr7g0209231 Rosa chinensis HOM05D007134 ORTHO05D009004 8.4e-113 411.0 311 61.1
Lj8A293T18 Lonicera japonica HOM05D007134 ORTHO05D009004 1.1e-112 410.6 294 64.6
FvH4_5g21740 Fragaria vesca HOM05D007134 ORTHO05D009004 1.4e-112 410.2 308 62.7
MD06G1032400 Malus domestica HOM05D007134 ORTHO05D009004 1.4e-112 410.2 315 62.2
FAN08G2031 Fragaria x ananassa HOM05D007134 ORTHO05D009004 1.9e-112 409.8 308 63.0
TPR.G28658 Trifolium pratense HOM05D007134 ORTHO05D009004 1.9e-112 409.8 299 64.9
Sc01g0007540 Simmondsia chinensis HOM05D007134 ORTHO05D009004 9.3e-112 407.5 296 63.2
Psat4g079040 Pisum sativum HOM05D007134 ORTHO05D009004 1.6e-111 406.8 317 61.8
PSO782G3567 Papaver somniferum HOM05D007134 ORTHO05D009004 2.1e-111 406.4 299 63.9
arahy.Tifrunner.gnm1.ann1.2XNM6Q Arachis hypogaea HOM05D007134 ORTHO05D009004 3.5e-111 405.6 320 61.2
FAN13G3184 Fragaria x ananassa HOM05D007134 ORTHO05D009004 4.6e-111 405.2 308 62.0
PGSC0003DMG400017530 Solanum tuberosum HOM05D007134 ORTHO05D009004 4.6e-111 405.2 322 58.4
Lalb_Chr05g0220571 Lupinus albus HOM05D007134 ORTHO05D009004 6.0e-111 404.8 306 62.4
CAN.G1659.3 Capsicum annuum HOM05D007134 ORTHO05D009004 2.3e-110 402.9 295 61.0
Nitab4.5_0001276g0070 Nicotiana tabacum HOM05D007134 ORTHO05D009004 3.9e-110 402.1 286 63.3
arahy.Tifrunner.gnm1.ann1.40JZG2 Arachis hypogaea HOM05D007134 ORTHO05D009004 8.7e-110 401.0 320 60.6
AT2G35320 Arabidopsis thaliana HOM05D007134 ORTHO05D009004 1.1e-109 400.6 295 64.4
THA.LOC104814437 Tarenaya hassleriana HOM05D007134 ORTHO05D009004 2.5e-109 399.4 293 62.1
Aqoxy3G02427 Aquilegia oxysepala HOM05D007134 ORTHO05D009004 5.7e-109 398.3 306 61.1
FAN18G1678 Fragaria x ananassa HOM05D007134 ORTHO05D009004 1.3e-108 397.1 333 58.0
AL4G31350 Arabidopsis lyrata HOM05D007134 ORTHO05D009004 1.1e-107 394.0 295 63.7
EL10Ac5g12144 Beta vulgaris HOM05D007134 ORTHO05D009004 2.4e-107 392.9 292 62.7
Ah.12g054890 Amaranthus hybridus HOM05D007134 ORTHO05D009004 3.1e-107 392.5 320 57.8
CDE12G0960 Ceratophyllum demersum HOM05D007134 ORTHO05D009004 4.1e-107 392.1 295 62.7
A03p19520 Brassica napus HOM05D007134 ORTHO05D009004 6.9e-107 391.3 295 63.1
C03p22750 Brassica napus HOM05D007134 ORTHO05D009004 6.9e-107 391.3 295 61.7
BraA03t11205Z Brassica rapa HOM05D007134 ORTHO05D009004 6.9e-107 391.3 295 63.1
Thhalv10016981m.g Eutrema salsugineum HOM05D007134 ORTHO05D009004 6.9e-107 391.3 295 63.4
AL457U10010 Arabidopsis lyrata HOM05D007134 ORTHO05D009004 9.0e-107 391.0 295 63.4
Carub.0004s1701 Capsella rubella HOM05D007134 ORTHO05D009004 1.2e-106 390.6 294 62.9
AUR62007266 Chenopodium quinoa HOM05D007134 ORTHO05D009004 2.0e-106 389.8 318 57.9
Sp4g17520 Schrenkiella parvula HOM05D007134 ORTHO05D009004 2.0e-106 389.8 295 63.1
CDE04G0512 Ceratophyllum demersum HOM05D007134 ORTHO05D009004 1.0e-105 387.5 316 60.8
BolC3t14673H Brassica oleracea HOM05D007134 ORTHO05D009004 2.9e-105 386.0 295 61.4
Cc08_g02480 Coffea canephora HOM05D007134 ORTHO05D009004 2.9e-105 386.0 288 62.2
CARHR129460 Cardamine hirsuta HOM05D007134 ORTHO05D009004 5.0e-105 385.2 295 60.7
Aa31LG9G15330 Aethionema arabicum HOM05D007134 ORTHO05D009004 1.1e-104 384.0 317 59.3
DCAR_032214 Daucus carota HOM05D007134 ORTHO05D009004 2.5e-104 382.9 294 61.6
MSTRG.6669 Avicennia marina HOM05D007134 ORTHO05D009004 6.1e-103 378.3 292 59.9
ATR0049G037 Amborella trichopoda HOM05D007134 ORTHO05D009004 7.9e-103 377.9 302 60.3
SGA_v2.0_scaffold34G13941 Striga asiatica HOM05D007134 ORTHO05D009004 1.0e-102 377.5 290 60.3
Gohir.A12G209200 Gossypium hirsutum HOM05D007134 ORTHO05D009004 1.4e-102 377.1 259 67.2
Oeu036071.3 Olea europaea HOM05D007134 ORTHO05D009004 1.8e-99 366.7 327 54.1
SalBow7G3039 Salvia bowleyana HOM05D007134 ORTHO05D009004 2.4e-99 366.3 297 58.2
ECA233G0754 Erigeron canadensis HOM05D007134 ORTHO05D009004 6.9e-99 364.8 294 58.5
SalBow7G1996 Salvia bowleyana HOM05D007134 ORTHO05D009004 6.9e-99 364.8 311 57.2
Lsat_1_v5_gn_6_64760 Lactuca sativa HOM05D007134 ORTHO05D009004 2.0e-98 363.2 293 59.0
Migut.M00165 Erythranthe guttata HOM05D007134 ORTHO05D009004 4.5e-98 362.1 284 60.6
HanXRQChr06g0178411 Helianthus annuus HOM05D007134 ORTHO05D009004 7.7e-98 361.3 301 56.5
Rhsim11G0013400 Rhododendron simsii HOM05D007134 ORTHO05D009004 3.2e-96 355.9 429 45.0
Hund11255 Selenicereus undatus HOM05D007134 ORTHO05D009004 4.2e-96 355.5 321 53.9
Zm00001eb417090 Zea mays HOM05D007134 ORTHO05D009004 9.4e-96 354.4 299 56.2
Nn6g33621 Nelumbo nucifera HOM05D007134 ORTHO05D009004 1.2e-95 354.0 297 56.9
Os06g0110100 Oryza sativa ssp. japonica HOM05D007134 ORTHO05D009004 1.2e-95 354.0 302 57.6
vmacro00339 Vaccinium macrocarpon HOM05D007134 ORTHO05D009004 1.0e-89 334.3 452 41.4
unitig_749.g14086 Utricularia gibba HOM05D007134 ORTHO05D009004 2.9e-89 332.8 294 54.1
FAN04G0135 Fragaria x ananassa HOM05D007134 ORTHO05D009004 1.1e-88 330.9 308 53.9
BcaC01g05731 Brassica carinata HOM05D007134 ORTHO05D009004 6.7e-86 321.6 295 52.9
PSO063G6706 Papaver somniferum HOM05D007134 ORTHO05D009004 8.2e-84 314.7 297 51.2
AUR62018733 Chenopodium quinoa HOM05D007134 ORTHO05D009004 2.0e-82 310.1 318 47.8
Pp3c2_15970 Physcomitrium patens HOM05D007134 ORTHO05D009004 1.0e-73 281.2 292 46.9
AagrBONN_evm.TU.Sc2ySwM_117.2263 Anthoceros agrestis HOM05D007134 ORTHO05D009004 6.5e-73 278.5 308 42.5
Medtr4g098510 Medicago truncatula HOM05D007134 ORTHO05D009004 2.5e-72 276.6 235 59.6
VMungo0251G0669 Vigna mungo HOM05D007134 ORTHO05D009004 2.4e-67 260.0 179 65.9
Pp3c1_31250 Physcomitrium patens HOM05D007134 ORTHO05D009004 5.4e-67 258.8 301 43.2
Pp3c2_10940 Physcomitrium patens HOM05D007134 ORTHO05D009004 2.5e-56 223.4 293 41.3
QL12p006104 Quercus lobata HOM05D007134 ORTHO05D009004 2.8e-55 219.9 150 67.3
Pp3c17_17110 Physcomitrium patens HOM05D007134 ORTHO05D009004 2.4e-51 206.8 262 40.8
VMungo0251G0585 Vigna mungo HOM05D007134 ORTHO05D009004 2.8e-39 166.8 121 62.8
SEGI_12545 Sequoiadendron giganteum HOM05D007134 ORTHO05D009004 5.8e-37 159.1 124 58.1
Cpa.g.sc71.65 Carica papaya HOM05D007134 ORTHO05D009004 7.8e-34 148.7 87 67.8
Nn6g33134 Nelumbo nucifera HOM05D007134 ORTHO05D009004 1.5e-08 64.7 74 51.4


User provided reference genes

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