Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 4.6e-62 241.1 129 100.0
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 5.5e-47 191.0 125 84.0
CsaV3_3G001020 Cucumis sativus L. HOM05D001798 ORTHO05D022392 3.7e-43 178.3 108 89.8
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 2.9e-32 142.1 127 60.6
ClCG10G000950 Citrullus lanatus HOM05D001798 ORTHO05D022392 8.6e-24 114.0 118 62.7
ClCG10G000970 Citrullus lanatus HOM05D001798 ORTHO05D022392 1.2e-12 77.0 112 48.2
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 4.4e-12 75.1 125 42.4
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 9.8e-12 73.9 126 43.7
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 3.7e-11 72.0 96 45.8
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 3.7e-11 72.0 96 45.8
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 3.7e-11 72.0 75 50.7
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 1.9e-10 69.7 123 39.0
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 1.6e-09 66.6 96 46.9
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 2.0e-09 66.2 119 36.1
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.7e-09 65.9 125 38.4
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 3.5e-09 65.5 121 39.7
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 4.6e-09 65.1 125 38.4
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 4.6e-09 65.1 118 35.6
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 6.0e-09 64.7 77 50.6
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 7.8e-09 64.3 125 39.2
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 1.0e-08 63.9 134 36.6
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.3e-08 62.8 88 44.3
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 2.3e-08 62.8 123 35.8
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 2.3e-08 62.8 128 34.4
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 3.0e-08 62.4 108 40.7
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 3.0e-08 62.4 130 39.2
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 3.0e-08 62.4 123 34.1
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 3.9e-08 62.0 124 37.9
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 5.0e-08 61.6 114 37.7
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 5.0e-08 61.6 118 35.6
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 5.0e-08 61.6 118 34.7
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 6.6e-08 61.2 115 41.7
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 6.6e-08 61.2 116 37.9
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 6.6e-08 61.2 124 37.1
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 6.6e-08 61.2 127 33.9
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 6.6e-08 61.2 129 36.4
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 8.6e-08 60.8 131 38.2
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 8.6e-08 60.8 72 47.2
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.1e-07 60.5 123 39.0
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.1e-07 60.5 119 37.8
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 1.1e-07 60.5 135 33.3
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 1.1e-07 60.5 89 46.1
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 1.5e-07 60.1 89 39.3
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 1.5e-07 60.1 63 54.0
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 1.9e-07 59.7 131 38.2
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 1.9e-07 59.7 53 58.5
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 2.5e-07 59.3 116 36.2
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 2.5e-07 59.3 114 33.3
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 2.5e-07 59.3 128 36.7
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 3.3e-07 58.9 55 60.0
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 4.3e-07 58.5 63 47.6
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 5.6e-07 58.2 120 35.0
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 5.6e-07 58.2 127 36.2
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 5.6e-07 58.2 114 33.3
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 5.6e-07 58.2 120 35.8
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 7.3e-07 57.8 123 35.8
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 7.3e-07 57.8 97 36.1
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 9.5e-07 57.4 46 60.9
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 9.5e-07 57.4 116 37.1
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 9.5e-07 57.4 115 39.1
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 9.5e-07 57.4 115 34.8
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 9.5e-07 57.4 123 35.8
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 1.2e-06 57.0 79 46.8
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 1.2e-06 57.0 63 50.8
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.6e-06 56.6 46 60.9
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.6e-06 56.6 124 33.9
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.6e-06 56.6 124 37.1
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 1.6e-06 56.6 126 34.9
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.6e-06 56.6 92 42.4
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.6e-06 56.6 114 32.5
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 1.6e-06 56.6 123 35.8
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.1e-06 56.2 126 31.7
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 2.1e-06 56.2 62 53.2
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 2.1e-06 56.2 92 42.4
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.1e-06 56.2 131 38.2
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 2.1e-06 56.2 122 34.4
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 2.1e-06 56.2 38 71.1
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 2.1e-06 56.2 38 71.1
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 2.8e-06 55.8 117 38.5
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 3.6e-06 55.5 118 34.7
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 3.6e-06 55.5 127 36.2
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 3.6e-06 55.5 38 68.4
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 3.6e-06 55.5 115 33.9
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 3.6e-06 55.5 57 54.4
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 3.6e-06 55.5 115 40.0
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 3.6e-06 55.5 128 32.0
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 4.7e-06 55.1 71 45.1
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 4.7e-06 55.1 126 34.9
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 4.7e-06 55.1 79 45.6
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 4.7e-06 55.1 124 36.3
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 6.2e-06 54.7 122 36.1
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 6.2e-06 54.7 125 37.6
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 6.2e-06 54.7 127 33.1
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 8.1e-06 54.3 38 65.8
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 8.1e-06 54.3 135 34.1
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 8.1e-06 54.3 135 34.1
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 8.1e-06 54.3 37 73.0


User provided reference genes

Program Settings