Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C013778.2 Cucumis melo HOM05D006904 ORTHO05D008439 1.3e-162 576.6 355 100.0
CsaV3_3G000910 Cucumis sativus L. HOM05D006904 ORTHO05D008439 3.8e-138 495.4 320 98.1
ClCG10G000840 Citrullus lanatus HOM05D006904 ORTHO05D008439 1.0e-127 460.7 320 84.1
GSVIVG01019640001 Vitis vinifera HOM05D006904 ORTHO05D008439 7.7e-75 285.0 324 59.3
TAR629G0561 Trochodendron aralioides HOM05D006904 ORTHO05D008439 8.5e-74 281.6 325 56.6
QL02p029228 Quercus lobata HOM05D006904 ORTHO05D008439 4.2e-73 279.3 321 56.7
Sed0025618 Sechium edule HOM05D006904 ORTHO05D008439 4.7e-72 275.8 282 60.6
Ciclev10021179m.g Citrus clementina HOM05D006904 ORTHO05D008439 1.8e-71 273.9 278 56.8
Gohir.D12G240700 Gossypium hirsutum HOM05D006904 ORTHO05D008439 5.2e-71 272.3 327 52.0
Gorai.008G257800 Gossypium raimondii HOM05D006904 ORTHO05D008439 5.2e-71 272.3 327 52.0
Gohir.A12G239500 Gossypium hirsutum HOM05D006904 ORTHO05D008439 1.3e-69 267.7 327 51.4
Potri.001G084500 Populus trichocarpa HOM05D006904 ORTHO05D008439 2.2e-69 266.9 317 49.8
Prupe.5G128700 Prunus persica HOM05D006904 ORTHO05D008439 2.8e-69 266.5 325 52.6
COL.COLO4_10787 Corchorus olitorius HOM05D006904 ORTHO05D008439 1.8e-68 263.8 326 49.7
TWI81G0826 Tripterygium wilfordii HOM05D006904 ORTHO05D008439 2.4e-68 263.5 312 52.2
CSS0028351 Camellia sinensis var. sinensis HOM05D006904 ORTHO05D008439 3.1e-68 263.1 323 54.8
MD14G1125000 Malus domestica HOM05D006904 ORTHO05D008439 3.1e-68 263.1 327 50.8
Thecc.03G222200 Theobroma cacao HOM05D006904 ORTHO05D008439 3.1e-68 263.1 326 50.9
Cfa011933 Carpinus fangiana HOM05D006904 ORTHO05D008439 7.0e-68 261.9 318 50.9
Dinv02287 Davidia involucrata HOM05D006904 ORTHO05D008439 7.0e-68 261.9 329 52.0
Aqoxy5G04256 Aquilegia oxysepala HOM05D006904 ORTHO05D008439 2.7e-67 260.0 298 51.0
Sopen08g031220 Solanum pennellii HOM05D006904 ORTHO05D008439 2.7e-67 260.0 302 52.3
PGSC0003DMG400012243 Solanum tuberosum HOM05D006904 ORTHO05D008439 2.7e-67 260.0 256 58.2
Nitab4.5_0004251g0070 Nicotiana tabacum HOM05D006904 ORTHO05D008439 3.5e-67 259.6 283 53.0
Solyc08g083010.3 Solanum lycopersicum HOM05D006904 ORTHO05D008439 7.7e-67 258.5 271 55.7
Haze_09157 Corylus avellana HOM05D006904 ORTHO05D008439 1.0e-66 258.1 322 49.7
RcHm_v2.0_Chr7g0186801 Rosa chinensis HOM05D006904 ORTHO05D008439 1.3e-66 257.7 281 53.0
Haze_09163 Corylus avellana HOM05D006904 ORTHO05D008439 2.3e-66 256.9 329 49.2
CAN.G567.78 Capsicum annuum HOM05D006904 ORTHO05D008439 2.9e-66 256.5 281 54.8
MD06G1117600 Malus domestica HOM05D006904 ORTHO05D008439 5.0e-66 255.8 309 49.8
Nitab4.5_0007063g0060 Nicotiana tabacum HOM05D006904 ORTHO05D008439 8.6e-66 255.0 260 57.3
vmacro11509 Vaccinium macrocarpon HOM05D006904 ORTHO05D008439 1.9e-65 253.8 318 50.0
Rhsim02G0251400 Rhododendron simsii HOM05D006904 ORTHO05D008439 2.5e-65 253.4 269 55.4
FAN13G1638 Fragaria x ananassa HOM05D006904 ORTHO05D008439 4.7e-64 249.2 317 51.7
CiPaw.12G078200 Carya illinoinensis HOM05D006904 ORTHO05D008439 6.1e-64 248.8 313 62.3
FAN18G2239 Fragaria x ananassa HOM05D006904 ORTHO05D008439 1.0e-63 248.1 317 52.1
MBI04_g44912_MAGBIO Magnolia biondii HOM05D006904 ORTHO05D008439 1.0e-63 248.1 301 49.2
arahy.Tifrunner.gnm1.ann1.U3Q9D7 Arachis hypogaea HOM05D006904 ORTHO05D008439 1.4e-63 247.7 302 49.7
FvH4_5g11010 Fragaria vesca HOM05D006904 ORTHO05D008439 1.4e-63 247.7 317 51.7
Hma1.2p1_0456F.1_g156570 Hydrangea macrophylla HOM05D006904 ORTHO05D008439 3.0e-63 246.5 250 61.6
Actinidia04169 Actinidia chinensis HOM05D006904 ORTHO05D008439 1.5e-62 244.2 322 46.6
HanXRQChr07g0192161 Helianthus annuus HOM05D006904 ORTHO05D008439 1.5e-62 244.2 322 47.2
Atru.chr9.1900 Acer truncatum HOM05D006904 ORTHO05D008439 5.7e-62 242.3 242 57.4
arahy.Tifrunner.gnm1.ann1.NJ37M5 Arachis hypogaea HOM05D006904 ORTHO05D008439 5.7e-62 242.3 315 48.6
Eucgr.E01035 Eucalyptus grandis HOM05D006904 ORTHO05D008439 9.8e-62 241.5 269 59.9
Lj2g0027548 Lotus japonicus HOM05D006904 ORTHO05D008439 1.7e-61 240.7 271 52.8
FAN04G1837 Fragaria x ananassa HOM05D006904 ORTHO05D008439 2.8e-61 240.0 315 49.5
MBI04_g21743_MAGBIO Magnolia biondii HOM05D006904 ORTHO05D008439 1.1e-60 238.0 247 53.8
Sabra01G0061300 Salix brachista HOM05D006904 ORTHO05D008439 1.8e-60 237.3 318 45.9
PGR042G3610 Punica granatum HOM05D006904 ORTHO05D008439 2.4e-60 236.9 281 63.3
Medtr3g005290 Medicago truncatula HOM05D006904 ORTHO05D008439 3.5e-59 233.0 279 50.9
Ca_13963_v3 Cicer arietinum L. HOM05D006904 ORTHO05D008439 4.5e-59 232.6 279 51.3
Glyma.09G286200 Glycine max HOM05D006904 ORTHO05D008439 5.0e-58 229.2 265 51.7
MSTRG.24864 Avicennia marina HOM05D006904 ORTHO05D008439 8.6e-58 228.4 339 45.1
Cc08_g16680 Coffea canephora HOM05D006904 ORTHO05D008439 1.9e-57 227.3 274 54.4
Oeu010740.1 Olea europaea HOM05D006904 ORTHO05D008439 4.3e-57 226.1 245 52.7
CANSAT21G0222 Cannabis sativa HOM05D006904 ORTHO05D008439 5.6e-57 225.7 311 56.6
Phvul.002G333700 Phaseolus vulgaris HOM05D006904 ORTHO05D008439 5.6e-57 225.7 270 51.1
Psat1g000400 Pisum sativum HOM05D006904 ORTHO05D008439 9.5e-57 224.9 272 51.1
ECA233G3570 Erigeron canadensis HOM05D006904 ORTHO05D008439 1.2e-56 224.6 250 51.2
VMungo1309G0432 Vigna mungo HOM05D006904 ORTHO05D008439 3.6e-56 223.0 270 53.3
PSO541G0496 Papaver somniferum HOM05D006904 ORTHO05D008439 6.1e-56 222.2 282 49.3
THA.LOC104813055 Tarenaya hassleriana HOM05D006904 ORTHO05D008439 6.1e-56 222.2 260 49.6
Hund11354 Selenicereus undatus HOM05D006904 ORTHO05D008439 8.0e-56 221.9 259 49.0
Sc01g0010610 Simmondsia chinensis HOM05D006904 ORTHO05D008439 4.0e-55 219.5 316 46.5
EL10Ac5g12440 Beta vulgaris HOM05D006904 ORTHO05D008439 6.8e-55 218.8 271 46.1
Ah.12g053150 Amaranthus hybridus HOM05D006904 ORTHO05D008439 8.9e-55 218.4 269 48.3
Thhalv10025762m.g Eutrema salsugineum HOM05D006904 ORTHO05D008439 2.0e-54 217.2 268 48.9
Lj8A201G80 Lonicera japonica HOM05D006904 ORTHO05D008439 2.6e-54 216.9 244 49.6
PSO675G2501 Papaver somniferum HOM05D006904 ORTHO05D008439 2.6e-54 216.9 282 46.1
Migut.A01096 Erythranthe guttata HOM05D006904 ORTHO05D008439 3.4e-54 216.5 311 43.7
BcaC09g50912 Brassica carinata HOM05D006904 ORTHO05D008439 1.7e-53 214.2 292 46.6
BcaNung01113 Brassica carinata HOM05D006904 ORTHO05D008439 1.7e-53 214.2 266 50.0
A01p15360 Brassica napus HOM05D000458 ORTHO05D000951 1.7e-53 214.2 292 46.6
C01p19310 Brassica napus HOM05D000458 ORTHO05D000951 1.7e-53 214.2 292 46.6
BolC1t01857H Brassica oleracea HOM05D000458 ORTHO05D000951 1.7e-53 214.2 292 46.6
AUR62007044 Chenopodium quinoa HOM05D006904 ORTHO05D008439 2.9e-53 213.4 300 42.7
Peaxi162Scf00074g00356 Petunia axillaris HOM05D006904 ORTHO05D008439 4.9e-53 212.6 299 45.8
TPR.G25509 Trifolium pratense HOM05D006904 ORTHO05D008439 6.4e-53 212.2 254 50.8
AT4G24090 Arabidopsis thaliana HOM05D006904 ORTHO05D008439 1.4e-52 211.1 262 48.1
BraA01t01480Z Brassica rapa HOM05D006904 ORTHO05D008439 2.4e-52 210.3 292 46.2
Duzib205G0314 Durio zibethinus HOM05D006904 ORTHO05D008439 2.4e-52 210.3 326 43.9
Carub.0007s1701 Capsella rubella HOM05D006904 ORTHO05D008439 5.4e-52 209.1 276 46.7
DCAR_006536 Daucus carota HOM05D006904 ORTHO05D008439 5.4e-52 209.1 242 57.4
AL7G29200 Arabidopsis lyrata HOM05D006904 ORTHO05D008439 1.6e-51 207.6 268 47.4
CDE09G0165 Ceratophyllum demersum HOM05D006904 ORTHO05D008439 1.6e-51 207.6 249 47.8
SGA_v2.0_scaffold104G30265 Striga asiatica HOM05D006904 ORTHO05D008439 3.5e-51 206.5 320 45.3
Lsat_1_v5_gn_6_9180 Lactuca sativa HOM05D000482 ORTHO05D000349 6.0e-51 205.7 242 51.7
Sp7g22050 Schrenkiella parvula HOM05D006904 ORTHO05D008439 7.8e-51 205.3 302 45.0
CDE11G0025 Ceratophyllum demersum HOM05D006904 ORTHO05D008439 3.0e-50 203.4 262 46.6
AUR62019908 Chenopodium quinoa HOM05D006904 ORTHO05D008439 1.2e-48 198.0 318 48.7
Zm00001eb319140 Zea mays HOM05D006904 ORTHO05D008439 1.8e-47 194.1 244 63.5
Aa31LG6G7300 Aethionema arabicum HOM05D006904 ORTHO05D008439 2.0e-46 190.7 307 40.7
Haze_14079 Corylus avellana HOM05D006904 ORTHO05D008439 2.0e-46 190.7 283 44.2
ATR0620G017 Amborella trichopoda HOM05D006904 ORTHO05D008439 3.4e-46 189.9 274 42.0
HPP92_025869 Vanilla planifolia HOM05D006904 ORTHO05D008439 4.4e-46 189.5 247 48.2
unitig_88.g27646 Utricularia gibba HOM05D006904 ORTHO05D008439 3.5e-43 179.9 236 51.3
SalBow8G2695 Salvia bowleyana HOM05D006904 ORTHO05D008439 1.7e-42 177.6 266 46.6
Manes.02G003600 Manihot esculenta HOM05D006904 ORTHO05D008439 1.9e-41 174.1 270 49.6
Haze_16434 Corylus avellana HOM05D006904 ORTHO05D008439 4.3e-41 172.9 217 49.3
CARHR231490 Cardamine hirsuta HOM05D006904 ORTHO05D008439 4.7e-40 169.5 138 61.6
Os09g0529350 Oryza sativa ssp. japonica HOM05D006904 ORTHO05D008439 2.3e-39 167.2 147 57.1
ECA246G4131 Erigeron canadensis HOM05D006904 ORTHO05D008439 2.5e-33 147.1 247 40.5
Nn5g30646 Nelumbo nucifera HOM05D006904 ORTHO05D008439 5.2e-31 139.4 94 73.4
HanXRQChr06g0166841 Helianthus annuus HOM05D006904 ORTHO05D008439 2.0e-30 137.5 135 56.3
SEGI_29366 Sequoiadendron giganteum HOM05D006904 ORTHO05D008439 1.4e-28 131.3 223 35.9
Lsat_1_v5_gn_3_13720 Lactuca sativa HOM05D006904 ORTHO05D008439 1.1e-25 121.7 230 36.5
CBR_g70738 Chara braunii HOM05D006904 ORTHO05D008439 5.3e-23 112.8 148 38.5
Mapoly0033s0090 Marchantia polymorpha HOM05D006904 ORTHO05D008439 6.9e-23 112.5 142 44.4
Cpa.g.sc175.18 Carica papaya HOM05D006904 ORTHO05D008439 2.0e-22 110.9 203 40.9
Pp3c9_20020 Physcomitrium patens HOM05D006904 ORTHO05D008439 7.6e-22 109.0 285 30.5
SMO361G0353 Selaginella moellendorffii HOM05D006904 ORTHO05D008439 1.3e-21 108.2 141 41.8
Aqoxy5G04252 Aquilegia oxysepala HOM05D006904 ORTHO05D008439 3.8e-21 106.7 187 38.0
AagrBONN_evm.TU.Sc2ySwM_228.3172 Anthoceros agrestis HOM05D006904 ORTHO05D008439 4.2e-20 103.2 172 37.2
MCO05G331 Micromonas commoda HOM05D006904 ORTHO05D008439 2.3e-18 97.4 141 41.1
QL02p029244 Quercus lobata HOM05D006904 ORTHO05D008439 9.0e-15 85.5 103 49.5
BcaC09g50913 Brassica carinata HOM05D006904 ORTHO05D008439 1.4e-12 78.2 97 52.6
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 2.7e-11 73.9 60 56.7
Cre02.g144850 Chlamydomonas reinhardtii HOM05D006904 ORTHO05D008439 6.7e-10 69.3 139 34.5


User provided reference genes

Program Settings