Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C013732.2 Cucumis melo HOM05D003687 ORTHO05D004571 2.2e-255 885.2 468 100.0
CsaV3_3G000370 Cucumis sativus L. HOM05D003687 ORTHO05D004571 6.3e-234 813.9 430 97.7
ClCG10G000330 Citrullus lanatus HOM05D003687 ORTHO05D004571 1.2e-227 793.1 430 91.9
Sed0005072 Sechium edule HOM05D003687 ORTHO05D004571 5.9e-208 727.6 431 85.4
FvH4_1g10530 Fragaria vesca HOM05D003687 ORTHO05D004571 3.4e-195 685.3 432 79.2
FAN19G1222 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.7e-194 682.9 432 78.7
MD02G1119200 Malus domestica HOM05D003687 ORTHO05D004571 3.7e-194 681.8 434 78.3
CSS0042676 Camellia sinensis var. sinensis HOM05D003687 ORTHO05D004571 4.9e-194 681.4 429 79.0
RcHm_v2.0_Chr2g0097441 Rosa chinensis HOM05D003687 ORTHO05D004571 4.9e-194 681.4 431 78.4
Prupe.7G180700 Prunus persica HOM05D003687 ORTHO05D004571 3.2e-193 678.7 435 77.2
Manes.02G112800 Manihot esculenta HOM05D003687 ORTHO05D004571 7.0e-193 677.6 428 78.5
Hma1.2p1_2491F.1_g323220 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 1.7e-191 672.9 435 77.5
MD15G1233200 Malus domestica HOM05D003687 ORTHO05D004571 2.3e-191 672.5 434 77.6
Cfa007065 Carpinus fangiana HOM05D003687 ORTHO05D004571 3.9e-191 671.8 439 77.4
Hma1.2p1_0300F.1_g118150 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 1.1e-190 670.2 430 77.2
Lalb_Chr05g0211911 Lupinus albus HOM05D003687 ORTHO05D004571 1.1e-190 670.2 434 76.5
CANSAT25G3704 Cannabis sativa HOM05D003687 ORTHO05D004571 3.3e-190 668.7 435 76.1
CiPaw.07G004000 Carya illinoinensis HOM05D003687 ORTHO05D004571 3.3e-190 668.7 431 78.2
Lalb_Chr16g0377261 Lupinus albus HOM05D003687 ORTHO05D004571 3.3e-190 668.7 376 85.1
CiPaw.08G180600 Carya illinoinensis HOM05D003687 ORTHO05D004571 1.2e-189 666.8 432 76.6
PSO063G5755 Papaver somniferum HOM05D003687 ORTHO05D004571 1.6e-189 666.4 438 76.3
FAN28G1596 Fragaria x ananassa HOM05D003687 ORTHO05D004571 2.1e-189 666.0 431 77.3
Cpa.g.sc535.4 Carica papaya HOM05D003687 ORTHO05D004571 6.2e-189 664.5 439 74.5
Lsat_1_v5_gn_8_23040 Lactuca sativa HOM05D003687 ORTHO05D004571 6.2e-189 664.5 429 76.5
TAR376G1076 Trochodendron aralioides HOM05D003687 ORTHO05D004571 8.1e-189 664.1 442 75.8
PSO339G2900 Papaver somniferum HOM05D003687 ORTHO05D004571 1.4e-188 663.3 438 76.0
FAN23G1902 Fragaria x ananassa HOM05D003687 ORTHO05D004571 2.3e-188 662.5 431 78.4
Eucgr.I02231 Eucalyptus grandis HOM05D003687 ORTHO05D004571 3.1e-188 662.1 434 75.8
FAN26G2468 Fragaria x ananassa HOM05D003687 ORTHO05D004571 3.1e-188 662.1 431 78.7
Ca_19449_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 5.2e-188 661.4 372 83.9
TAR628G0600 Trochodendron aralioides HOM05D003687 ORTHO05D004571 8.9e-188 660.6 437 76.0
PGR119G1501 Punica granatum HOM05D003687 ORTHO05D004571 1.2e-187 660.2 429 75.5
Cc07_g11670 Coffea canephora HOM05D003687 ORTHO05D004571 2.6e-187 659.1 432 77.1
Sabra05G0082600 Salix brachista HOM05D003687 ORTHO05D004571 2.6e-187 659.1 433 76.2
TPR.G18309 Trifolium pratense HOM05D003687 ORTHO05D004571 2.6e-187 659.1 433 75.1
Lalb_Chr09g0321291 Lupinus albus HOM05D003687 ORTHO05D004571 5.8e-187 657.9 434 75.1
QL06p052789 Quercus lobata HOM05D003687 ORTHO05D004571 5.8e-187 657.9 433 76.2
Atru.chr3.969 Acer truncatum HOM05D003687 ORTHO05D004571 9.9e-187 657.1 431 75.4
THA.LOC104807434 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 9.9e-187 657.1 380 83.7
TPR.G25131 Trifolium pratense HOM05D003687 ORTHO05D004571 2.2e-186 656.0 428 76.2
Atru.chr3.957 Acer truncatum HOM05D003687 ORTHO05D004571 4.9e-186 654.8 431 75.2
QL06p053788 Quercus lobata HOM05D003687 ORTHO05D004571 4.9e-186 654.8 433 76.2
Medtr8g074010 Medicago truncatula HOM05D003687 ORTHO05D004571 6.4e-186 654.4 376 82.7
BraA08t34133Z Brassica rapa HOM05D003687 ORTHO05D004571 1.4e-185 653.3 381 82.2
Lj2g0026838 Lotus japonicus HOM05D003687 ORTHO05D004571 1.4e-185 653.3 376 82.7
Thecc.01G007000 Theobroma cacao HOM05D003687 ORTHO05D004571 1.4e-185 653.3 437 72.5
Manes.01G153800 Manihot esculenta HOM05D003687 ORTHO05D004571 1.9e-185 652.9 427 76.3
A08p21800 Brassica napus HOM05D003687 ORTHO05D004571 2.4e-185 652.5 381 82.4
BolC3t20334H Brassica oleracea HOM05D003687 ORTHO05D004571 3.2e-185 652.1 381 82.2
AT4G35630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 4.1e-185 651.7 363 85.4
Nitab4.5_0000702g0080 Nicotiana tabacum HOM05D003687 ORTHO05D004571 4.1e-185 651.7 443 74.9
Psat0s1725g0080 Pisum sativum HOM05D003687 ORTHO05D004571 4.1e-185 651.7 376 82.4
Psat2g150440 Pisum sativum HOM05D003687 ORTHO05D004571 4.1e-185 651.7 436 75.0
Thhalv10025259m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 5.4e-185 651.4 365 84.7
BcaC01g00508 Brassica carinata HOM05D003687 ORTHO05D004571 9.2e-185 650.6 381 81.6
C03p80790 Brassica napus HOM05D003687 ORTHO05D004571 9.2e-185 650.6 381 81.6
BraA09t36786Z Brassica rapa HOM05D003687 ORTHO05D004571 1.2e-184 650.2 380 82.4
Potri.005G099900 Populus trichocarpa HOM05D003687 ORTHO05D004571 1.6e-184 649.8 438 74.9
Rhsim10G0197900 Rhododendron simsii HOM05D003687 ORTHO05D004571 2.7e-184 649.0 429 73.9
Sp7g33400 Schrenkiella parvula HOM05D003687 ORTHO05D004571 3.5e-184 648.7 365 84.7
AL7G15520 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 4.6e-184 648.3 365 84.4
Carub.0003s3171 Capsella rubella HOM05D003687 ORTHO05D004571 4.6e-184 648.3 365 84.1
C09p13480 Brassica napus HOM05D003687 ORTHO05D004571 6.0e-184 647.9 380 81.6
Sp3g30960 Schrenkiella parvula HOM05D003687 ORTHO05D004571 6.0e-184 647.9 365 84.9
BcaB07g31719 Brassica carinata HOM05D003687 ORTHO05D004571 7.8e-184 647.5 380 81.6
A09p11460 Brassica napus HOM05D003687 ORTHO05D004571 7.8e-184 647.5 380 81.8
Aa31LG8G14900 Aethionema arabicum HOM05D003687 ORTHO05D004571 1.0e-183 647.1 365 84.4
Thhalv10023021m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 1.3e-183 646.7 365 84.7
THA.LOC104819724 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 1.3e-183 646.7 365 84.9
Duzib147G1246 Durio zibethinus HOM05D003687 ORTHO05D004571 1.7e-183 646.4 429 74.6
AL3G50590 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 2.3e-183 646.0 365 84.1
AT2G17630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 2.3e-183 646.0 365 84.1
Glyma.02G041900 Glycine max HOM05D003687 ORTHO05D004571 2.3e-183 646.0 431 74.0
TWI53G1012 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 2.3e-183 646.0 436 73.9
BolC9t54238H Brassica oleracea HOM05D003687 ORTHO05D004571 3.0e-183 645.6 380 81.3
Aqoxy1G00525 Aquilegia oxysepala HOM05D003687 ORTHO05D004571 3.9e-183 645.2 423 75.4
Migut.H02194 Erythranthe guttata HOM05D003687 ORTHO05D004571 5.1e-183 644.8 378 82.0
MSTRG.3621 Avicennia marina HOM05D003687 ORTHO05D004571 6.6e-183 644.4 418 75.6
Carub.0007s0467 Capsella rubella HOM05D003687 ORTHO05D004571 8.6e-183 644.0 365 83.8
CARHR243980 Cardamine hirsuta HOM05D003687 ORTHO05D004571 8.6e-183 644.0 363 84.0
PGSC0003DMG400001524 Solanum tuberosum HOM05D003687 ORTHO05D004571 8.6e-183 644.0 375 83.2
BcaB03g12420 Brassica carinata HOM05D003687 ORTHO05D004571 2.5e-182 642.5 369 83.2
Lj4P233T12 Lonicera japonica HOM05D003687 ORTHO05D004571 3.3e-182 642.1 376 81.9
Glyma.01G159800 Glycine max HOM05D003687 ORTHO05D004571 5.6e-182 641.3 433 75.3
Sopen02g027630 Solanum pennellii HOM05D003687 ORTHO05D004571 7.3e-182 641.0 440 72.7
Solyc02g082830.3 Solanum lycopersicum HOM05D003687 ORTHO05D004571 9.5e-182 640.6 435 74.0
VMungo1215G1127 Vigna mungo HOM05D003687 ORTHO05D004571 1.2e-181 640.2 374 81.0
Phvul.002G115000 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 2.1e-181 639.4 374 82.1
arahy.Tifrunner.gnm1.ann1.XW297T Arachis hypogaea HOM05D003687 ORTHO05D004571 4.7e-181 638.3 417 77.2
arahy.Tifrunner.gnm1.ann1.ZVTH8F Arachis hypogaea HOM05D003687 ORTHO05D004571 4.7e-181 638.3 417 77.2
Ciclev10025659m.g Citrus clementina HOM05D003687 ORTHO05D004571 8.1e-181 637.5 434 72.8
Glyma.11G084400 Glycine max HOM05D003687 ORTHO05D004571 1.1e-180 637.1 433 74.8
COL.COLO4_22538 Corchorus olitorius HOM05D003687 ORTHO05D004571 1.4e-180 636.7 429 72.7
Duzib264G0784 Durio zibethinus HOM05D003687 ORTHO05D004571 1.4e-180 636.7 429 72.5
SGA_v2.0_scaffold2G00959 Striga asiatica HOM05D003687 ORTHO05D004571 1.8e-180 636.3 374 81.8
Gorai.001G198400 Gossypium raimondii HOM05D003687 ORTHO05D004571 2.4e-180 636.0 367 82.3
Gohir.A07G170700 Gossypium hirsutum HOM05D003687 ORTHO05D004571 3.1e-180 635.6 367 82.3
Gohir.D07G177500 Gossypium hirsutum HOM05D003687 ORTHO05D004571 4.0e-180 635.2 367 82.3
SalBow3G3833 Salvia bowleyana HOM05D003687 ORTHO05D004571 4.0e-180 635.2 377 82.2
unitig_699.g19680 Utricularia gibba HOM05D003687 ORTHO05D004571 1.2e-179 633.6 372 80.9
MBI05_g40602_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 3.4e-179 632.1 438 71.9
Oeu028610.1 Olea europaea HOM05D003687 ORTHO05D004571 4.9e-178 628.2 364 83.8
TWI09G0502 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 6.4e-178 627.9 362 83.1
DCAR_030822 Daucus carota HOM05D003687 ORTHO05D004571 1.4e-177 626.7 377 82.0
CDE10G0952 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 6.0e-176 621.3 362 81.2
SGA_v2.0_scaffold108G30984 Striga asiatica HOM05D003687 ORTHO05D004571 7.8e-176 620.9 363 81.8
Sc07g0001320 Simmondsia chinensis HOM05D003687 ORTHO05D004571 8.1e-173 610.9 434 71.0
ATR0329G002 Amborella trichopoda HOM05D003687 ORTHO05D004571 1.1e-172 610.5 436 69.7
Aa31LG6G12590 Aethionema arabicum HOM05D003687 ORTHO05D004571 1.4e-172 610.1 366 78.7
VMungo0251G3174 Vigna mungo HOM05D003687 ORTHO05D004571 1.4e-172 610.1 433 70.7
SHI29483 Sapria himalayana HOM05D003687 ORTHO05D004571 4.0e-172 608.6 432 70.1
Phvul.003G269100 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 5.3e-172 608.2 440 69.8
Ah.03g148400 Amaranthus hybridus HOM05D003687 ORTHO05D004571 5.8e-171 604.7 369 79.9
CDE10G0671 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 5.8e-171 604.7 355 80.3
Ca_24964_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 8.4e-170 600.9 333 86.2
vmacro20525 Vaccinium macrocarpon HOM05D003687 ORTHO05D004571 8.4e-170 600.9 401 75.3
SEGI_09550 Sequoiadendron giganteum HOM05D003687 ORTHO05D004571 2.4e-169 599.4 370 76.5
Actinidia17383 Actinidia chinensis HOM05D003687 ORTHO05D004571 1.6e-168 596.7 431 71.5
BcaC04g22959 Brassica carinata HOM05D003687 ORTHO05D004571 1.3e-167 593.6 331 84.9
HPP92_002248 Vanilla planifolia HOM05D003687 ORTHO05D004571 3.6e-165 585.5 372 75.8
CAN.G890.77 Capsicum annuum HOM05D003687 ORTHO05D004571 6.2e-165 584.7 331 85.2
Peaxi162Scf01446g00005 Petunia axillaris HOM05D003687 ORTHO05D004571 8.1e-165 584.3 331 84.3
EL10Ac6g15469 Beta vulgaris HOM05D003687 ORTHO05D004571 1.8e-159 566.6 362 76.2
AUR62029452 Chenopodium quinoa HOM05D003687 ORTHO05D004571 3.1e-156 555.8 333 80.5
SMO259G0019 Selaginella moellendorffii HOM05D003687 ORTHO05D004571 4.0e-156 555.4 367 72.5
CBR_g34176 Chara braunii HOM05D003687 ORTHO05D004571 2.0e-155 553.1 370 71.9
Mapoly0033s0118 Marchantia polymorpha HOM05D003687 ORTHO05D004571 1.0e-154 550.8 378 68.8
Os03g0157900 Oryza sativa ssp. japonica HOM05D003687 ORTHO05D004571 1.3e-154 550.4 370 71.6
Pp3c9_15390 Physcomitrium patens HOM05D003687 ORTHO05D004571 6.4e-154 548.1 364 70.1
CBR_g54970 Chara braunii HOM05D003687 ORTHO05D004571 1.1e-153 547.4 366 70.8
Zm00001eb004390 Zea mays HOM05D003687 ORTHO05D004571 7.1e-153 544.7 436 63.8
Haze_03674 Corylus avellana HOM05D003687 ORTHO05D004571 1.7e-146 523.5 432 65.5
FAN26G0112 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.9e-137 493.4 313 77.3
GSVIVG01006497001 Vitis vinifera HOM05D003687 ORTHO05D004571 4.1e-132 475.7 444 59.9
Cre07.g331550 Chlamydomonas reinhardtii HOM05D003687 ORTHO05D004571 5.3e-132 475.3 373 61.9
ECA233G3718 Erigeron canadensis HOM05D003687 ORTHO05D004571 9.4e-129 464.5 441 58.5
PRCOL_00000472 Prasinoderma coloniale HOM05D003687 ORTHO05D004571 5.1e-127 458.8 369 58.5
Nitab4.5_0002967g0020 Nicotiana tabacum HOM05D003687 ORTHO05D004571 1.9e-121 440.3 438 56.6
MCO11G731 Micromonas commoda HOM05D003687 ORTHO05D004571 3.1e-116 422.9 361 56.2
MBI05_g22625_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 2.4e-100 370.2 435 50.6
Haze_26462 Corylus avellana HOM05D003687 ORTHO05D004571 3.4e-94 349.7 363 50.4
QL06p053814 Quercus lobata HOM05D003687 ORTHO05D004571 1.0e-87 328.2 254 68.9
QL06p052765 Quercus lobata HOM05D000009 ORTHO05D000008 4.9e-85 319.3 243 68.3
BcaB07g31718 Brassica carinata HOM05D003687 ORTHO05D004571 3.0e-82 310.1 179 84.9
HanXRQChr09g0253801 Helianthus annuus HOM05D003687 ORTHO05D004571 7.3e-81 305.4 176 81.2
HanXRQChr02g0050301 Helianthus annuus HOM05D003687 ORTHO05D004571 2.1e-80 303.9 176 80.7
Dinv40174 Davidia involucrata HOM05D003687 ORTHO05D004571 1.9e-76 290.8 154 91.6
QL06p052757 Quercus lobata HOM05D003687 ORTHO05D004571 2.3e-74 283.9 258 60.5
A06p33750 Brassica napus HOM05D003687 ORTHO05D004571 3.4e-70 270.0 245 60.4
SalBow2G1655 Salvia bowleyana HOM05D003687 ORTHO05D004571 8.1e-64 248.8 247 56.3
CSS0005640 Camellia sinensis var. sinensis HOM05D003687 ORTHO05D004571 2.7e-59 233.8 190 65.3
MCO03G424 Micromonas commoda HOM05D003687 ORTHO05D049027 1.3e-58 231.5 367 36.5
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 2.5e-57 227.3 175 69.1
Cfa023378 Carpinus fangiana HOM05D003687 ORTHO05D004571 5.6e-57 226.1 427 33.0
QL06p053818 Quercus lobata HOM05D003687 ORTHO05D004571 2.2e-53 214.2 163 71.2
PRCOL_00006694 Prasinoderma coloniale HOM05D003687 ORTHO05D049027 3.5e-51 206.8 324 37.3
ATR0553G001 Amborella trichopoda HOM05D003687 ORTHO05D004571 3.0e-50 203.8 190 57.9
RcHm_v2.0_Chr2g0097551 Rosa chinensis HOM05D003687 ORTHO05D004571 8.7e-50 202.2 148 67.6
Dinv09926 Davidia involucrata HOM05D003687 ORTHO05D004571 1.5e-49 201.4 180 60.6
Dinv17413 Davidia involucrata HOM05D003687 ORTHO05D004571 3.3e-49 200.3 157 66.2
Dinv37828 Davidia involucrata HOM05D003687 ORTHO05D004571 8.1e-48 195.7 176 60.2
Dinv29031 Davidia involucrata HOM05D003687 ORTHO05D034002 4.5e-46 189.9 175 59.4
BcaB07g31714 Brassica carinata HOM05D003687 ORTHO05D004571 1.3e-42 178.3 147 64.6
SalBow8G1645 Salvia bowleyana HOM05D003687 ORTHO05D004571 1.8e-42 177.9 108 77.8
SalBow7G3504 Salvia bowleyana HOM05D003687 ORTHO05D004571 6.7e-42 176.0 284 40.8
RcHm_v2.0_Chr2g0097541 Rosa chinensis HOM05D003687 ORTHO05D004571 8.7e-34 149.1 142 57.7
Dinv34003 Davidia involucrata HOM05D003687 ORTHO05D004571 6.3e-32 142.9 89 78.7
ATR0763G123 Amborella trichopoda HOM05D003687 ORTHO05D004571 2.4e-31 141.0 107 69.2
ATR0749G088 Amborella trichopoda HOM05D003687 ORTHO05D004571 3.1e-31 140.6 171 48.0
SalBow6G6204 Salvia bowleyana HOM05D003687 ORTHO05D004571 5.0e-29 133.3 78 79.5
SEGI_08881 Sequoiadendron giganteum HOM05D003687 ORTHO05D004571 3.2e-28 130.6 293 31.1
Dinv18127 Davidia involucrata HOM05D003687 ORTHO05D043272 2.4e-23 114.4 63 92.1
SalBow6G6332 Salvia bowleyana HOM05D003687 ORTHO05D004571 1.0e-21 109.0 135 47.4
SalBow7G4144 Salvia bowleyana HOM05D003687 ORTHO05D004571 1.3e-21 108.6 232 34.1
BraA06t26310Z Brassica rapa HOM05D003687 ORTHO05D043272 1.7e-21 108.2 65 90.8
ATR0208G001 Amborella trichopoda HOM05D003687 ORTHO05D067511 3.9e-18 97.1 65 73.8
ATR0199G031 Amborella trichopoda HOM05D003687 ORTHO05D004571 2.0e-17 94.7 135 43.7
ATR0329G021 Amborella trichopoda HOM05D003687 ORTHO05D004571 2.9e-13 80.9 56 71.4
SalBow6G4873 Salvia bowleyana HOM05D003687 ORTHO05D004571 5.0e-13 80.1 62 58.1
Psat6g182000 Pisum sativum HOM05D002062 ORTHO05D002242 2.6e-09 67.8 50 64.0
Solyc04g150135.1 Solanum lycopersicum HOM05D001565 ORTHO05D001725 1.7e-08 65.1 53 60.4
Sopen04g021110 Solanum pennellii HOM05D001565 ORTHO05D018129 2.2e-08 64.7 40 80.0
TAR371G0743 Trochodendron aralioides HOM05D003687 ORTHO05D006936 6.3e-08 63.2 52 59.6
Psat3g043760 Pisum sativum HOM05D003687 ORTHO05D018418 1.4e-07 62.0 37 75.7
Solyc04g050430.1 Solanum lycopersicum HOM05D001565 ORTHO05D004571 2.4e-07 61.2 41 73.2
Solyc04g050403.1 Solanum lycopersicum HOM05D001565 ORTHO05D004571 1.2e-06 58.9 40 75.0
BolC3t18117H Brassica oleracea HOM05D003687 ORTHO05D004571 4.5e-06 57.0 37 73.0
Dinv11589 Davidia involucrata HOM05D003687 ORTHO05D004571 5.9e-06 56.6 39 66.7


User provided reference genes

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