Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 1.2e-195 686.4 376 100.0
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 3.2e-188 661.8 376 96.8
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 1.2e-171 606.7 390 88.2
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 1.6e-150 536.6 378 81.2
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 1.1e-98 364.4 395 59.7
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 6.9e-98 361.7 379 60.2
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 5.8e-97 358.6 381 57.2
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 2.9e-96 356.3 379 60.2
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 8.4e-96 354.8 379 59.9
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.1e-95 354.4 379 59.9
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 7.1e-95 351.7 381 59.8
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.3e-91 340.9 379 57.8
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 6.2e-91 338.6 385 55.6
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 9.0e-90 334.7 379 55.4
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 2.6e-89 333.2 384 54.4
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 1.9e-87 327.0 392 54.6
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 1.9e-87 327.0 396 57.6
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 7.1e-87 325.1 383 53.3
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 2.1e-86 323.6 373 55.8
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 3.5e-86 322.8 373 57.4
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 6.7e-85 318.5 386 54.1
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 8.7e-85 318.2 380 53.9
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 1.1e-84 317.8 390 53.3
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 2.5e-84 316.6 390 56.9
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 4.3e-84 315.8 394 53.0
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 7.4e-84 315.1 401 51.9
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 7.4e-84 315.1 381 52.8
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 9.6e-84 314.7 388 52.6
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 2.1e-83 313.5 380 55.3
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 2.1e-83 313.5 380 55.3
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 9.0e-82 308.1 377 55.4
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 5.9e-81 305.4 398 53.5
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.9e-80 303.1 383 53.0
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.9e-80 303.1 383 53.0
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 5.0e-80 302.4 383 53.8
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 3.2e-79 299.7 380 52.6
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 5.5e-79 298.9 380 52.1
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 1.0e-77 294.7 384 53.9
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 1.3e-77 294.3 382 51.8
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.8e-77 293.9 391 52.4
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 2.3e-77 293.5 395 51.9
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 5.1e-77 292.4 393 51.9
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 5.1e-77 292.4 379 52.8
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 1.1e-76 291.2 380 53.2
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 7.4e-76 288.5 381 50.7
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 9.7e-76 288.1 380 51.1
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 1.3e-75 287.7 331 59.2
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 1.3e-75 287.7 386 51.3
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 1.3e-75 287.7 378 52.4
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 4.1e-74 282.7 355 52.4
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 6.9e-74 282.0 382 53.1
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 1.3e-72 277.7 382 51.8
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 8.5e-72 275.0 360 50.3
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.9e-71 273.9 378 51.6
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 2.5e-71 273.5 354 54.2
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 5.5e-71 272.3 376 51.9
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 7.2e-71 271.9 377 51.5
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 7.2e-71 271.9 353 55.2
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.0e-69 268.1 382 47.9
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 2.3e-69 266.9 385 50.6
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 5.1e-69 265.8 382 50.5
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 2.0e-68 263.8 379 48.3
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 3.7e-67 259.6 396 49.0
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 4.8e-67 259.2 397 46.9
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 1.4e-66 257.7 369 48.0
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 9.1e-66 255.0 376 47.3
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 1.5e-65 254.2 337 52.5
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 5.9e-65 252.3 337 52.2
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 7.7e-65 251.9 379 48.5
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 7.7e-65 251.9 395 45.8
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 3.8e-64 249.6 395 47.1
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 1.1e-63 248.1 397 45.8
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 2.5e-63 246.9 337 52.2
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 2.1e-62 243.8 385 46.2
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 2.1e-62 243.8 395 44.6
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 3.0e-61 240.0 382 45.8
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 6.7e-61 238.8 382 45.0
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 3.3e-60 236.5 398 43.5
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 5.7e-60 235.7 398 44.5
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 4.8e-59 232.6 398 46.2
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 1.4e-58 231.1 395 44.3
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 1.8e-58 230.7 395 45.1
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 3.1e-58 229.9 377 45.4
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 1.2e-57 228.0 337 51.9
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 3.5e-57 226.5 386 43.8
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 6.5e-56 222.2 377 41.4
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 6.5e-56 222.2 377 41.4
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 3.6e-54 216.5 381 40.7
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 3.6e-54 216.5 377 44.6
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 1.0e-53 214.9 391 46.5
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 1.0e-53 214.9 377 44.3
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 1.5e-52 211.1 375 44.0
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 9.7e-52 208.4 385 44.4
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 2.2e-51 207.2 264 48.5
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 2.7e-49 200.3 389 44.5
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 2.7e-49 200.3 389 44.5
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 1.5e-47 194.5 382 42.7
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 1.9e-47 194.1 370 42.7
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 4.2e-47 193.0 320 49.7
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 2.7e-46 190.3 392 38.5
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 1.0e-45 188.3 378 43.9
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 5.2e-45 186.0 383 43.9
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 3.4e-44 183.3 329 45.3
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 4.4e-44 183.0 378 43.7
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 9.8e-44 181.8 383 37.9
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 2.2e-43 180.6 382 39.0
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 2.2e-43 180.6 385 37.1
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 4.1e-42 176.4 377 42.2
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 9.1e-42 175.3 381 39.6
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 5.9e-41 172.6 316 45.3
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 7.7e-41 172.2 377 38.5
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 7.7e-41 172.2 317 42.3
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 1.7e-40 171.0 317 42.3
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 4.2e-39 166.4 380 36.8
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 1.2e-38 164.9 380 37.1
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 1.6e-38 164.5 383 38.6
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 3.6e-38 163.3 331 42.0
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 1.8e-37 161.0 385 35.8
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 3.0e-37 160.2 331 42.0
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 1.7e-35 154.5 185 63.8
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 3.7e-35 153.3 328 42.1
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 4.1e-34 149.8 382 36.9
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 5.9e-33 146.0 184 50.0
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 7.7e-33 145.6 224 50.9
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 5.0e-32 142.9 380 35.0
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 4.7e-30 136.3 313 36.7
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.8e-29 134.4 387 35.1
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 5.2e-29 132.9 313 36.7
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 2.6e-28 130.6 295 43.1
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 3.4e-28 130.2 230 52.2
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 2.2e-27 127.5 381 36.0
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 1.1e-26 125.2 373 36.2
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 1.2e-25 121.7 341 33.4
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.6e-25 121.3 321 35.5
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 1.0e-24 118.6 368 31.2
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 3.0e-24 117.1 317 35.6
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 1.1e-23 115.2 314 35.4
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 1.5e-23 114.8 311 35.0
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 3.3e-23 113.6 302 35.4
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 4.3e-23 113.2 302 35.4
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 4.3e-23 113.2 163 51.5
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 2.1e-22 110.9 305 36.4
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 3.6e-22 110.2 307 34.2
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 3.6e-22 110.2 307 34.2
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 1.8e-21 107.8 303 36.0
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 7.5e-20 102.4 301 32.9
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 1.7e-16 91.3 376 30.1
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 3.3e-15 87.0 313 31.0
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 2.3e-13 80.9 299 31.8
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 4.0e-13 80.1 299 31.8
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 6.4e-11 72.8 204 32.4
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 1.9e-10 71.2 320 29.1
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 4.1e-10 70.1 303 30.4
THA.LOC104804296 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 2.1e-09 67.8 110 40.0
BolC7t46546H Brassica oleracea HOM05D004420 ORTHO05D005048 7.8e-09 65.9 304 30.3
BraA03t15434Z Brassica rapa HOM05D004420 ORTHO05D005048 1.0e-08 65.5 329 29.8
C07p61200 Brassica napus HOM05D004420 ORTHO05D005048 5.1e-08 63.2 304 29.9
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 6.6e-08 62.8 202 30.2
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 6.6e-08 62.8 202 30.2
Os06g0728500 Oryza sativa ssp. japonica HOM05D060560 ORTHO05D005048 1.5e-07 61.6 393 27.7
A03p63630 Brassica napus HOM05D004420 ORTHO05D005048 2.5e-07 60.8 325 29.2
Thhalv10022985m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 4.3e-07 60.1 138 34.8


User provided reference genes

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