Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C013668.2 Cucumis melo HOM05D006681 ORTHO05D008338 3.1e-201 704.9 348 100.0
CsaV3_6G022080 Cucumis sativus L. HOM05D006681 ORTHO05D008338 2.2e-114 416.4 269 81.4
ClCG02G020630 Citrullus lanatus HOM05D006681 ORTHO05D008338 9.2e-105 384.4 321 66.7
Sed0010670 Sechium edule HOM05D006681 ORTHO05D008338 2.9e-98 362.8 261 71.6
CANSAT54G2145 Cannabis sativa HOM05D006681 ORTHO05D008338 8.1e-85 318.2 271 58.7
Cfa011429 Carpinus fangiana HOM05D006681 ORTHO05D008338 1.1e-84 317.8 274 60.9
CiPaw.13G101600 Carya illinoinensis HOM05D006681 ORTHO05D008338 1.4e-84 317.4 257 63.0
TAR633G1649 Trochodendron aralioides HOM05D006681 ORTHO05D008338 6.8e-84 315.1 257 61.5
GSVIVG01025054001 Vitis vinifera HOM05D006681 ORTHO05D008338 6.8e-84 315.1 256 63.7
THA.LOC104814870 Tarenaya hassleriana HOM05D006681 ORTHO05D008338 4.4e-83 312.4 267 59.2
Phvul.011G069100 Phaseolus vulgaris HOM05D006681 ORTHO05D008338 5.8e-83 312.0 271 61.3
Atru.chr3.3798 Acer truncatum HOM05D006681 ORTHO05D008338 1.3e-82 310.8 268 59.3
QL01p034239 Quercus lobata HOM05D006681 ORTHO05D008338 1.3e-82 310.8 268 60.1
Lj3g0002575 Lotus japonicus HOM05D006681 ORTHO05D008338 1.7e-82 310.5 272 59.6
TPR.G3006 Trifolium pratense HOM05D006681 ORTHO05D008338 6.4e-82 308.5 260 61.2
Lalb_Chr03g0026931 Lupinus albus HOM05D006681 ORTHO05D008338 8.4e-82 308.1 270 59.6
CSS0007914 Camellia sinensis var. sinensis HOM05D006681 ORTHO05D008338 1.9e-81 307.0 258 61.2
FAN16G0358 Fragaria x ananassa HOM05D006681 ORTHO05D008338 2.4e-81 306.6 257 61.9
Ciclev10028948m.g Citrus clementina HOM05D006681 ORTHO05D008338 3.2e-81 306.2 269 60.6
RcHm_v2.0_Chr5g0062361 Rosa chinensis HOM05D006681 ORTHO05D008338 3.2e-81 306.2 268 59.7
CSS0025304 Camellia sinensis var. sinensis HOM05D006681 ORTHO05D008338 4.1e-81 305.8 258 61.2
MD11G1116600 Malus domestica HOM05D006681 ORTHO05D008338 9.2e-81 304.7 270 60.4
CAN.G1647.1 Capsicum annuum HOM05D006681 ORTHO05D008338 1.2e-80 304.3 257 60.7
Eucgr.J02098 Eucalyptus grandis HOM05D006681 ORTHO05D008338 1.2e-80 304.3 261 59.0
FAN11G3596 Fragaria x ananassa HOM05D006681 ORTHO05D008338 1.6e-80 303.9 258 60.1
FvH4_3g34680 Fragaria vesca HOM05D006681 ORTHO05D008338 2.1e-80 303.5 258 60.1
VMungo1127G1059 Vigna mungo HOM05D006681 ORTHO05D008338 6.0e-80 302.0 294 56.8
Thecc.09G329700 Theobroma cacao HOM05D006681 ORTHO05D008338 7.8e-80 301.6 272 59.2
TWI31G0387 Tripterygium wilfordii HOM05D006681 ORTHO05D008338 3.0e-79 299.7 274 58.4
Sopen11g030630 Solanum pennellii HOM05D006681 ORTHO05D008338 3.9e-79 299.3 257 59.1
arahy.Tifrunner.gnm1.ann1.SK7GFS Arachis hypogaea HOM05D006681 ORTHO05D008338 6.6e-79 298.5 255 58.8
Gohir.A05G098700 Gossypium hirsutum HOM05D006681 ORTHO05D008338 8.6e-79 298.1 272 58.8
Medtr4g062130 Medicago truncatula HOM05D006681 ORTHO05D008338 8.6e-79 298.1 260 60.8
Psat7g220640 Pisum sativum HOM05D006681 ORTHO05D008338 1.1e-78 297.7 260 58.8
Gorai.009G102400 Gossypium raimondii HOM05D006681 ORTHO05D008338 1.5e-78 297.4 272 58.8
Rhsim13G0088300 Rhododendron simsii HOM05D006681 ORTHO05D008338 1.5e-78 297.4 261 58.2
Solyc11g072970.2 Solanum lycopersicum HOM05D006681 ORTHO05D008338 1.5e-78 297.4 257 59.1
arahy.Tifrunner.gnm1.ann1.FZI6FG Arachis hypogaea HOM05D006681 ORTHO05D008338 1.9e-78 297.0 255 58.4
Migut.D02146 Erythranthe guttata HOM05D006681 ORTHO05D008338 2.5e-78 296.6 261 59.0
Manes.11G136100 Manihot esculenta HOM05D006681 ORTHO05D008338 3.3e-78 296.2 253 61.3
Ca_19209_v3 Cicer arietinum L. HOM05D006681 ORTHO05D008338 4.3e-78 295.8 260 58.8
DCAR_006014 Daucus carota HOM05D006681 ORTHO05D008338 5.6e-78 295.4 269 56.1
Gohir.D05G098750 Gossypium hirsutum HOM05D006681 ORTHO05D008338 5.6e-78 295.4 272 58.5
Prupe.6G086900 Prunus persica HOM05D006681 ORTHO05D008338 5.6e-78 295.4 270 59.3
PGSC0003DMG400015551 Solanum tuberosum HOM05D006681 ORTHO05D008338 5.6e-78 295.4 257 58.8
Potri.009G026700 Populus trichocarpa HOM05D006681 ORTHO05D008338 7.3e-78 295.0 257 59.1
EL10Ac7g15941 Beta vulgaris HOM05D006681 ORTHO05D008338 3.6e-77 292.7 257 57.6
SGA_v2.0_scaffold134G34764 Striga asiatica HOM05D006681 ORTHO05D008338 3.6e-77 292.7 256 60.9
PGR119G1802 Punica granatum HOM05D006681 ORTHO05D008338 4.7e-77 292.4 287 53.0
Nn2g10531 Nelumbo nucifera HOM05D006681 ORTHO05D008338 1.1e-76 291.2 255 58.4
Cc01_g12140 Coffea canephora HOM05D006681 ORTHO05D008338 2.4e-76 290.0 263 59.3
Duzib170G0311 Durio zibethinus HOM05D006681 ORTHO05D008338 2.4e-76 290.0 271 56.1
Aqoxy4G03072 Aquilegia oxysepala HOM05D006681 ORTHO05D008338 3.1e-76 289.7 257 57.6
COL.COLO4_18427 Corchorus olitorius HOM05D006681 ORTHO05D008338 5.2e-76 288.9 272 57.4
FAN21G0481 Fragaria x ananassa HOM05D006681 ORTHO05D008338 1.5e-75 287.3 284 53.9
SalBow3G4078 Salvia bowleyana HOM05D006681 ORTHO05D008338 1.5e-75 287.3 259 59.5
HanXRQChr05g0134071 Helianthus annuus HOM05D006681 ORTHO05D008338 2.0e-75 287.0 251 57.4
Oeu040277.1 Olea europaea HOM05D006681 ORTHO05D008338 2.0e-75 287.0 269 59.1
Peaxi162Scf00411g00068 Petunia axillaris HOM05D006681 ORTHO05D008338 2.0e-75 287.0 257 56.8
Sabra09G0017800 Salix brachista HOM05D006681 ORTHO05D008338 2.0e-75 287.0 257 57.6
AUR62001852 Chenopodium quinoa HOM05D006681 ORTHO05D008338 4.4e-75 285.8 278 55.0
ECA236G1321 Erigeron canadensis HOM05D006681 ORTHO05D008338 4.4e-75 285.8 251 57.4
AL5G24960 Arabidopsis lyrata HOM05D006681 ORTHO05D008338 5.8e-75 285.4 261 54.8
AT3G46200 Arabidopsis thaliana HOM05D006681 ORTHO05D008338 4.9e-74 282.3 261 54.0
PSO384G0101 Papaver somniferum HOM05D006681 ORTHO05D008338 2.4e-73 280.0 256 57.4
PSO339G5789 Papaver somniferum HOM05D006681 ORTHO05D008338 3.2e-73 279.6 256 57.4
MSTRG.18607 Avicennia marina HOM05D006681 ORTHO05D008338 7.1e-73 278.5 257 57.6
Thhalv10002615m.g Eutrema salsugineum HOM05D006681 ORTHO05D008338 7.1e-73 278.5 261 54.8
HPP92_006593 Vanilla planifolia HOM05D006681 ORTHO05D008338 1.2e-72 277.7 267 52.4
Carub.0005s1203 Capsella rubella HOM05D006681 ORTHO05D008338 2.7e-72 276.6 261 54.0
Nitab4.5_0002684g0190 Nicotiana tabacum HOM05D006681 ORTHO05D008338 3.5e-72 276.2 262 55.3
Zm00001eb266060 Zea mays HOM05D006681 ORTHO05D008338 3.5e-72 276.2 261 55.2
Os05g0117500 Oryza sativa ssp. japonica HOM05D006681 ORTHO05D008338 6.0e-72 275.4 260 53.8
Carub.0003s2829 Capsella rubella HOM05D006681 ORTHO05D008338 1.3e-71 274.2 261 54.0
Lsat_1_v5_gn_8_78740 Lactuca sativa HOM05D006681 ORTHO05D008338 3.0e-71 273.1 251 55.4
Sp5g15430 Schrenkiella parvula HOM05D006681 ORTHO05D008338 5.1e-71 272.3 261 54.4
Glyma.12G075000 Glycine max HOM05D006681 ORTHO05D008338 1.1e-70 271.2 273 54.6
MBI14_g35939_MAGBIO Magnolia biondii HOM05D006681 ORTHO05D008338 1.9e-70 270.4 265 53.2
A06p21000 Brassica napus HOM05D006681 ORTHO05D008338 3.3e-70 269.6 261 52.9
C03p70520 Brassica napus HOM05D006681 ORTHO05D008338 4.3e-70 269.2 260 53.5
BolC3t19336H Brassica oleracea HOM05D006681 ORTHO05D008338 4.3e-70 269.2 260 53.5
BraA06t25188Z Brassica rapa HOM05D006681 ORTHO05D008338 4.3e-70 269.2 261 52.9
BcaC01g01926 Brassica carinata HOM05D006681 ORTHO05D008338 5.6e-70 268.9 260 53.5
Nitab4.5_0002684g0160 Nicotiana tabacum HOM05D006681 ORTHO05D008338 9.6e-70 268.1 270 53.3
Lj1A175T11 Lonicera japonica HOM05D006681 ORTHO05D008338 2.8e-69 266.5 255 57.3
vmacro03125 Vaccinium macrocarpon HOM05D006681 ORTHO05D008338 6.2e-69 265.4 254 54.7
FAN25G3219 Fragaria x ananassa HOM05D006681 ORTHO05D008338 1.4e-68 264.2 254 56.3
Lj3g0011020 Lotus japonicus HOM05D006681 ORTHO05D008338 2.6e-67 260.0 171 71.3
Ah.08g214980 Amaranthus hybridus HOM05D006681 ORTHO05D008338 7.1e-65 251.9 276 49.6
Aa31LG4G15300 Aethionema arabicum HOM05D006681 ORTHO05D008338 1.0e-63 248.1 339 42.5
Dinv32860 Davidia involucrata HOM05D006681 ORTHO05D008338 6.6e-63 245.4 218 58.3
Nitab4.5_0001953g0020 Nicotiana tabacum HOM05D006681 ORTHO05D008338 8.7e-63 245.0 245 53.9
Thhalv10002633m.g Eutrema salsugineum HOM05D006681 ORTHO05D008338 3.1e-60 236.5 168 66.7
SMO367G0798 Selaginella moellendorffii HOM05D006681 ORTHO05D008338 9.0e-60 235.0 255 49.8
AagrBONN_evm.TU.Sc2ySwM_228.1772 Anthoceros agrestis HOM05D006681 ORTHO05D008338 3.4e-59 233.0 250 48.0
Pp3c11_23040 Physcomitrium patens HOM05D006681 ORTHO05D008338 9.9e-59 231.5 264 44.3
Cpa.g.sc2126.1 Carica papaya HOM05D006681 ORTHO05D008338 2.9e-58 229.9 217 53.0
AUR62009646 Chenopodium quinoa HOM05D006681 ORTHO05D008338 1.9e-57 227.3 284 46.1
Haze_24007 Corylus avellana HOM05D006681 ORTHO05D008338 7.9e-56 221.9 405 37.5
Sc06g0008190 Simmondsia chinensis HOM05D006681 ORTHO05D008338 1.9e-54 217.2 149 67.1
Duzib168G1095 Durio zibethinus HOM05D006681 ORTHO05D008338 5.6e-54 215.7 219 54.3
Mapoly0128s0008 Marchantia polymorpha HOM05D006681 ORTHO05D008338 9.6e-54 214.9 256 46.5
AL1G56400 Arabidopsis lyrata HOM05D006681 ORTHO05D008338 6.7e-47 192.2 158 58.9
CBR_g415 Chara braunii HOM05D006681 ORTHO05D008338 1.8e-44 184.1 315 36.8
Pp3c11_23047 Physcomitrium patens HOM05D006681 ORTHO05D008338 1.3e-42 177.9 149 54.4
Hund05017 Selenicereus undatus HOM05D006681 ORTHO05D008338 3.8e-42 176.4 202 48.0
SEGI_27570 Sequoiadendron giganteum HOM05D006681 ORTHO05D008338 3.2e-41 173.3 168 52.4
ATR0759G055 Amborella trichopoda HOM05D006681 ORTHO05D008338 2.6e-35 153.7 163 50.3
Nitab4.5_0001953g0050 Nicotiana tabacum HOM05D006681 ORTHO05D008338 5.5e-33 146.0 262 37.0
Nitab4.5_0000766g0030 Nicotiana tabacum HOM05D006681 ORTHO05D008338 1.4e-31 141.4 142 52.1
CAN.G1289.2 Capsicum annuum HOM05D006681 ORTHO05D008338 3.9e-23 113.2 125 49.6
MD03G1102800 Malus domestica HOM05D006681 ORTHO05D008338 2.2e-21 107.5 73 71.2
MCO11G760 Micromonas commoda HOM05D006681 ORTHO05D008338 1.4e-20 104.8 259 29.7
PRCOL_00001211 Prasinoderma coloniale HOM05D006681 ORTHO05D008338 1.3e-18 98.2 228 28.1
Glyma.11G145018 Glycine max HOM05D006681 ORTHO05D008338 2.0e-11 74.3 108 41.7
Nitab4.5_0001068g0110 Nicotiana tabacum HOM05D006681 ORTHO05D008338 2.0e-11 74.3 73 53.4
Sc06g0008200 Simmondsia chinensis HOM05D006681 ORTHO05D008338 3.8e-10 70.1 108 39.8
CARHR154620 Cardamine hirsuta HOM05D006681 ORTHO05D008338 3.0e-07 60.5 44 59.1
CDE08G1356 Ceratophyllum demersum HOM05D006681 ORTHO05D008338 7.5e-06 55.8 37 67.6


User provided reference genes

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