Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 1.8e-309 1065.1 526 100.0
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 1.7e-299 1031.9 526 96.8
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 2.9e-280 968.0 528 90.7
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 1.1e-250 869.8 537 81.0
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 3.1e-189 665.6 523 64.8
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 3.1e-189 665.6 537 64.1
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 2.6e-188 662.5 532 64.1
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 7.2e-186 654.4 523 64.6
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 2.3e-184 649.4 523 62.1
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 3.0e-184 649.0 523 63.9
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 3.0e-184 649.0 523 63.9
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 6.7e-184 647.9 529 63.9
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 8.8e-184 647.5 534 62.7
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 1.5e-183 646.7 525 63.4
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 1.5e-183 646.7 537 64.2
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 1.7e-182 643.3 523 62.0
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.1e-181 640.6 523 63.7
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 1.4e-181 640.2 534 62.5
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 1.4e-181 640.2 528 61.7
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 4.1e-181 638.6 520 62.5
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 9.1e-181 637.5 547 61.2
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 9.1e-181 637.5 547 61.2
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 1.2e-180 637.1 525 62.7
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 4.7e-177 625.2 537 60.0
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 1.1e-175 620.5 522 61.1
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 2.6e-175 619.4 527 60.7
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 8.2e-174 614.4 554 60.6
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 3.1e-173 612.5 552 58.7
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 7.7e-172 607.8 526 59.7
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 5.5e-170 601.7 525 58.7
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.3e-168 596.3 552 57.6
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 2.6e-167 592.8 545 58.9
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 7.5e-167 591.3 511 61.1
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 2.2e-166 589.7 514 59.9
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 6.3e-166 588.2 528 57.6
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 6.3e-166 588.2 531 58.6
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 2.0e-164 583.2 552 59.2
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 1.3e-163 580.5 522 57.5
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 5.0e-163 578.6 522 56.9
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 1.9e-162 576.6 523 58.7
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 1.2e-161 573.9 518 58.9
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 3.7e-158 562.4 526 56.8
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 4.9e-158 562.0 481 61.1
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 7.0e-157 558.1 527 56.0
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 2.9e-155 552.7 523 55.4
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 1.9e-154 550.1 522 54.6
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 7.2e-154 548.1 522 54.0
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 1.6e-153 547.0 523 55.4
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 4.0e-152 542.3 520 57.3
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 1.5e-151 540.4 521 53.7
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 3.4e-151 539.3 530 53.6
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 5.7e-151 538.5 528 54.5
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 2.9e-150 536.2 540 53.9
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 1.1e-149 534.3 542 53.3
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 2.4e-149 533.1 542 53.1
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 1.2e-148 530.8 525 54.7
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 1.6e-148 530.4 531 55.0
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 3.5e-148 529.3 539 50.8
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 1.9e-146 523.5 529 53.1
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 5.6e-146 521.9 523 52.2
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 2.1e-145 520.0 523 51.6
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 2.8e-145 519.6 527 52.4
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 1.8e-144 516.9 548 52.2
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 1.2e-143 514.2 527 52.4
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 1.5e-143 513.8 527 53.5
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 2.6e-143 513.1 523 52.8
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 9.8e-143 511.1 523 51.6
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 1.7e-142 510.4 523 52.0
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 6.4e-142 508.4 552 50.2
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 7.8e-140 501.5 525 51.8
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 1.7e-139 500.4 528 51.3
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 3.0e-139 499.6 528 51.1
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 3.3e-138 496.1 536 50.0
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 1.6e-137 493.8 522 51.5
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 8.9e-136 488.0 531 49.7
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 1.5e-135 487.3 525 50.9
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 1.3e-134 484.2 525 51.6
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.4e-133 480.7 522 51.1
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 1.4e-133 480.7 509 49.7
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 1.9e-133 480.3 536 48.9
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 1.9e-133 480.3 525 48.4
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 1.9e-133 480.3 529 48.2
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 3.2e-133 479.6 526 50.2
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 2.1e-132 476.9 508 49.0
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 6.0e-132 475.3 530 48.3
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 7.8e-132 474.9 527 47.8
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 1.0e-131 474.6 527 47.8
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 1.3e-131 474.2 528 48.7
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 2.3e-131 473.4 526 48.3
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 6.6e-131 471.9 528 49.1
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 3.6e-129 466.1 528 47.3
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 5.2e-128 462.2 529 47.8
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 2.6e-127 459.9 529 48.2
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 2.6e-127 459.9 559 46.0
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 6.4e-126 455.3 526 47.1
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 6.4e-126 455.3 528 47.0
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 1.1e-125 454.5 528 47.7
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 1.1e-125 454.5 528 47.9
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 1.9e-125 453.8 527 47.2
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 2.1e-124 450.3 472 51.9
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 7.8e-124 448.4 530 47.0
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 3.8e-118 429.5 482 51.5
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 1.6e-116 424.1 531 45.6
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 2.3e-115 420.2 564 43.8
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 1.4e-112 411.0 538 43.3
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.4e-112 410.2 509 45.6
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 3.1e-112 409.8 519 43.9
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 5.3e-112 409.1 536 45.1
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 2.6e-111 406.8 542 44.6
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 9.9e-111 404.8 529 42.3
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 5.6e-106 389.0 507 42.4
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 7.4e-106 388.7 523 43.8
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 1.1e-101 374.8 530 41.9
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 1.1e-101 374.8 533 42.2
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 4.6e-100 369.4 406 49.0
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.8e-97 360.1 509 42.2
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 1.0e-91 341.7 520 39.8
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 1.3e-89 334.7 559 38.3
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 2.8e-89 333.6 473 42.1
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.2e-85 319.7 518 37.6
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 5.1e-83 312.8 518 37.5
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.6e-79 300.4 528 36.0
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.9e-75 286.6 476 38.4
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.5e-74 283.9 476 38.2
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 5.0e-70 269.6 508 34.3
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 4.5e-63 246.5 528 32.4
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.8e-57 227.3 474 34.2
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.8e-57 227.3 474 34.2
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 5.9e-55 219.5 388 36.9
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 1.7e-49 201.4 141 69.5
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 2.8e-49 200.7 294 42.9
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 1.4e-48 198.4 143 70.6
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 2.7e-47 194.1 314 40.1
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 1.0e-43 182.2 170 57.1
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 1.5e-37 161.8 538 25.8
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 4.3e-37 160.2 488 27.7
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 1.4e-35 155.2 533 27.6
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 3.7e-33 147.1 437 27.9
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 9.2e-32 142.5 542 25.5
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 2.5e-29 134.4 462 25.5
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 2.0e-23 114.8 510 23.9
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 7.3e-21 106.3 457 23.4
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 2.3e-19 101.3 65 69.2
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 1.5e-18 98.6 98 55.1
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.4e-18 97.1 299 28.8
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 5.4e-16 90.1 119 39.5
FAN05G5117 Fragaria x ananassa HOM05D000001 ORTHO05D000424 7.1e-16 89.7 55 76.4
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 2.3e-14 84.7 53 62.3
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 2.5e-13 81.3 200 33.5
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 7.3e-13 79.7 390 24.4
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.6e-12 78.6 82 48.8
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 2.1e-12 78.2 110 37.3
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 4.7e-12 77.0 127 33.1
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 2.3e-11 74.7 111 36.9
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 1.2e-07 62.4 61 39.3
Sabra13G0108800 Salix brachista HOM05D004790 ORTHO05D005678 2.3e-06 58.2 62 43.5


User provided reference genes

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