Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C013609.2 Cucumis melo HOM05D007014 ORTHO05D008894 2.3e-38 161.8 82 100.0
CsaV3_6G013010 Cucumis sativus L. HOM05D007014 ORTHO05D008894 2.4e-27 125.2 70 90.0
ClCG02G017580 Citrullus lanatus HOM05D007014 ORTHO05D008894 6.9e-27 123.6 70 87.1
MELO3C024591.2 Cucumis melo HOM05D007014 ORTHO05D008894 1.3e-25 119.4 70 87.1
Sed0017748 Sechium edule HOM05D007014 ORTHO05D008894 1.5e-21 105.9 74 73.0
Cfa014594 Carpinus fangiana HOM05D007014 ORTHO05D008894 1.4e-19 99.4 70 68.6
Haze_13147 Corylus avellana HOM05D007014 ORTHO05D008894 2.4e-19 98.6 70 67.1
Ciclev10022606m.g Citrus clementina HOM05D007014 ORTHO05D008894 5.3e-19 97.4 69 63.8
COL.COLO4_07554 Corchorus olitorius HOM05D007014 ORTHO05D008894 5.3e-19 97.4 73 67.1
Duzib052G1001 Durio zibethinus HOM05D007014 ORTHO05D008894 9.0e-19 96.7 72 70.8
Gohir.D13G066000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 9.0e-19 96.7 72 70.8
Gorai.013G075300 Gossypium raimondii HOM05D007014 ORTHO05D008894 9.0e-19 96.7 72 70.8
RcHm_v2.0_Chr6g0277731 Rosa chinensis HOM05D007014 ORTHO05D008894 1.2e-18 96.3 70 65.7
Gohir.A13G056000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 2.6e-18 95.1 66 71.2
Thecc.02G177900 Theobroma cacao HOM05D007014 ORTHO05D008894 7.6e-18 93.6 66 71.2
CiPaw.03G175500 Carya illinoinensis HOM05D007014 ORTHO05D008894 1.3e-17 92.8 69 65.2
Ciclev10023600m.g Citrus clementina HOM05D007014 ORTHO05D008894 1.3e-17 92.8 69 60.9
FAN27G2134 Fragaria x ananassa HOM05D007014 ORTHO05D008894 2.2e-17 92.0 71 66.2
Hma1.2p1_1201F.1_g266700 Hydrangea macrophylla HOM05D007014 ORTHO05D008894 2.2e-17 92.0 64 68.8
Manes.12G090900 Manihot esculenta HOM05D007014 ORTHO05D008894 3.8e-17 91.3 65 67.7
Peaxi162Scf02133g00022 Petunia axillaris HOM05D007014 ORTHO05D008894 3.8e-17 91.3 70 64.3
Potri.013G134102 Populus trichocarpa HOM05D007014 ORTHO05D008894 6.5e-17 90.5 70 64.3
GSVIVG01030373001 Vitis vinifera HOM05D007014 ORTHO05D008894 6.5e-17 90.5 71 66.2
Prupe.3G155400 Prunus persica HOM05D007014 ORTHO05D008894 8.4e-17 90.1 70 65.7
Sabra13G0113800 Salix brachista HOM05D007014 ORTHO05D008894 8.4e-17 90.1 65 66.2
Aa31LG1G20970 Aethionema arabicum HOM05D007014 ORTHO05D008894 1.4e-16 89.4 70 61.4
AT1G03650 Arabidopsis thaliana HOM05D007014 ORTHO05D008894 1.4e-16 89.4 70 62.9
Ciclev10022631m.g Citrus clementina HOM05D007014 ORTHO05D008894 1.9e-16 89.0 69 58.0
QL08p038417 Quercus lobata HOM05D007014 ORTHO05D008894 1.9e-16 89.0 69 62.3
AL1G13150 Arabidopsis lyrata HOM05D007014 ORTHO05D008894 2.5e-16 88.6 70 62.9
Thhalv10008981m.g Eutrema salsugineum HOM05D007014 ORTHO05D008894 2.5e-16 88.6 70 61.4
arahy.Tifrunner.gnm1.ann1.UXPW02 Arachis hypogaea HOM05D007014 ORTHO05D008894 3.2e-16 88.2 69 59.4
FvH4_2g15130 Fragaria vesca HOM05D007014 ORTHO05D008894 3.2e-16 88.2 71 63.4
Potri.013G134000 Populus trichocarpa HOM05D007014 ORTHO05D008894 3.2e-16 88.2 70 62.9
Sabra11G0072100 Salix brachista HOM05D000036 ORTHO05D000095 3.2e-16 88.2 70 61.4
Sabra15G0066900 Salix brachista HOM05D000036 ORTHO05D000095 3.2e-16 88.2 70 61.4
Carub.0001s0276 Capsella rubella HOM05D007014 ORTHO05D008894 4.2e-16 87.8 70 61.4
CAN.G486.11 Capsicum annuum HOM05D007014 ORTHO05D008894 4.2e-16 87.8 65 61.5
Lj8A113T47 Lonicera japonica HOM05D007014 ORTHO05D008894 4.2e-16 87.8 65 63.1
Sabra13G0113700 Salix brachista HOM05D000264 ORTHO05D000152 4.2e-16 87.8 70 61.4
Rhsim04G0068000 Rhododendron simsii HOM05D007014 ORTHO05D008894 5.5e-16 87.4 70 57.1
Nitab4.5_0003022g0100 Nicotiana tabacum HOM05D007014 ORTHO05D008894 7.1e-16 87.0 70 60.0
Sp1g02550 Schrenkiella parvula HOM05D007014 ORTHO05D008894 7.1e-16 87.0 65 66.2
HanXRQChr17g0553541 Helianthus annuus HOM05D007014 ORTHO05D008894 9.3e-16 86.7 68 60.3
arahy.Tifrunner.gnm1.ann1.THUB96 Arachis hypogaea HOM05D007014 ORTHO05D008894 1.2e-15 86.3 69 58.0
CANSAT78G1474 Cannabis sativa HOM05D007014 ORTHO05D008894 1.6e-15 85.9 70 55.7
Nitab4.5_0002575g0020 Nicotiana tabacum HOM05D007014 ORTHO05D008894 1.6e-15 85.9 71 60.6
CARHR002980 Cardamine hirsuta HOM05D007014 ORTHO05D008894 2.1e-15 85.5 70 60.0
PSO210G2618 Papaver somniferum HOM05D007014 ORTHO05D008894 2.7e-15 85.1 70 61.4
PSO832G4125 Papaver somniferum HOM05D007014 ORTHO05D008894 2.7e-15 85.1 70 61.4
PGSC0003DMG400007868 Solanum tuberosum HOM05D007014 ORTHO05D008894 2.7e-15 85.1 66 60.6
Solyc12g010680.3 Solanum lycopersicum HOM05D007014 ORTHO05D008894 3.5e-15 84.7 66 60.6
TWI36G0686 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 4.6e-15 84.3 70 54.3
arahy.Tifrunner.gnm1.ann1.YPG8JQ Arachis hypogaea HOM05D007014 ORTHO05D008894 6.0e-15 84.0 69 56.5
BcaC07g42241 Brassica carinata HOM05D007014 ORTHO05D008894 1.0e-14 83.2 70 58.6
Dinv02170 Davidia involucrata HOM05D007014 ORTHO05D008894 1.0e-14 83.2 70 60.0
Sopen12g005310 Solanum pennellii HOM05D007014 ORTHO05D008894 1.0e-14 83.2 66 59.1
PGSC0003DMG400007866 Solanum tuberosum HOM05D007014 ORTHO05D008894 1.0e-14 83.2 66 59.1
ECA233G3399 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.3e-14 82.8 65 52.3
Nn1g06593 Nelumbo nucifera HOM05D007014 ORTHO05D008894 1.3e-14 82.8 68 57.4
FAN15G2141 Fragaria x ananassa HOM05D007014 ORTHO05D008894 1.8e-14 82.4 64 64.1
TPR.G21768 Trifolium pratense HOM05D007014 ORTHO05D008894 1.8e-14 82.4 65 64.6
vmacro09278 Vaccinium macrocarpon HOM05D007014 ORTHO05D008894 1.8e-14 82.4 70 52.9
CSS0024097 Camellia sinensis var. sinensis HOM05D007014 ORTHO05D008894 2.3e-14 82.0 66 60.6
arahy.Tifrunner.gnm1.ann1.1ZYA2W Arachis hypogaea HOM05D007014 ORTHO05D008894 3.0e-14 81.6 65 58.5
Ca_28202_v3 Cicer arietinum L. HOM05D007014 ORTHO05D008894 3.0e-14 81.6 65 63.1
THA.LOC104801176 Tarenaya hassleriana HOM05D007014 ORTHO05D008894 3.0e-14 81.6 70 55.7
A09p68280 Brassica napus HOM05D001041 ORTHO05D000846 3.9e-14 81.3 70 58.6
BraA09t42163Z Brassica rapa HOM05D007014 ORTHO05D008894 3.9e-14 81.3 70 58.6
Sc21g0002660 Simmondsia chinensis HOM05D007014 ORTHO05D008894 3.9e-14 81.3 65 58.5
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 6.7e-14 80.5 70 58.6
BolC8t52799H Brassica oleracea HOM05D007014 ORTHO05D008894 6.7e-14 80.5 70 58.6
Lj3g0024821 Lotus japonicus HOM05D007014 ORTHO05D008894 8.7e-14 80.1 56 69.6
Oeu029922.1 Olea europaea HOM05D007014 ORTHO05D008894 8.7e-14 80.1 70 52.9
MD09G1249800 Malus domestica HOM05D007014 ORTHO05D008894 1.1e-13 79.7 72 59.7
TAR629G1268 Trochodendron aralioides HOM05D007014 ORTHO05D008894 1.9e-13 79.0 70 58.6
VMungo1127G0420 Vigna mungo HOM05D007014 ORTHO05D008894 1.9e-13 79.0 71 57.7
BcaC07g42250 Brassica carinata HOM05D007014 ORTHO05D008894 2.5e-13 78.6 70 54.3
C08p52830 Brassica napus HOM05D007014 ORTHO05D008894 2.5e-13 78.6 70 54.3
Medtr4g046047 Medicago truncatula HOM05D007014 ORTHO05D008894 3.3e-13 78.2 70 55.7
BcaC07g42236 Brassica carinata HOM05D007014 ORTHO05D008894 4.3e-13 77.8 64 57.8
Hund01169 Selenicereus undatus HOM05D007014 ORTHO05D008894 4.3e-13 77.8 65 56.9
MSTRG.12316 Avicennia marina HOM05D007014 ORTHO05D008894 5.7e-13 77.4 70 51.4
SalBow1G7232 Salvia bowleyana HOM05D007014 ORTHO05D008894 5.7e-13 77.4 66 51.5
unitig_21.g20401 Utricularia gibba HOM05D007014 ORTHO05D008894 7.4e-13 77.0 70 50.0
EL10Ac9g20747 Beta vulgaris HOM05D007014 ORTHO05D008894 9.6e-13 76.6 75 50.7
Cpa.g.sc34.144 Carica papaya HOM05D007014 ORTHO05D008894 9.6e-13 76.6 64 54.7
Cc05_g06870 Coffea canephora HOM05D007014 ORTHO05D008894 9.6e-13 76.6 66 59.1
Glyma.12G111800 Glycine max HOM05D007014 ORTHO05D008894 9.6e-13 76.6 65 58.5
Psat7g157760 Pisum sativum HOM05D007014 ORTHO05D008894 9.6e-13 76.6 53 66.0
Aqoxy4G01010 Aquilegia oxysepala HOM05D007014 ORTHO05D008894 1.6e-12 75.9 65 53.8
Phvul.011G117200 Phaseolus vulgaris HOM05D007014 ORTHO05D008894 2.1e-12 75.5 65 60.0
CDE02G4296 Ceratophyllum demersum HOM05D007014 ORTHO05D008894 2.8e-12 75.1 65 53.8
BcaC07g42259 Brassica carinata HOM05D007014 ORTHO05D008894 1.8e-11 72.4 70 52.9
Glyma.06G293600 Glycine max HOM05D007014 ORTHO05D008894 2.4e-11 72.0 51 62.7
AUR62037369 Chenopodium quinoa HOM05D007014 ORTHO05D008894 3.1e-11 71.6 52 63.5
DCAR_013001 Daucus carota HOM05D007014 ORTHO05D008894 4.0e-11 71.2 75 50.7
Lsat_1_v5_gn_8_133041 Lactuca sativa HOM05D007014 ORTHO05D008894 2.6e-10 68.6 62 48.4
FAN24G2354 Fragaria x ananassa HOM05D007014 ORTHO05D008894 3.4e-10 68.2 70 52.9
SGA_v2.0_scaffold307G48064 Striga asiatica HOM05D007014 ORTHO05D008894 5.8e-10 67.4 69 44.9
MBI17_g43194_MAGBIO Magnolia biondii HOM05D007014 ORTHO05D008894 1.7e-09 65.9 52 57.7
Migut.H01076 Erythranthe guttata HOM05D007014 ORTHO05D008894 3.8e-09 64.7 63 42.9
HPP92_002954 Vanilla planifolia HOM05D007014 ORTHO05D008894 3.8e-09 64.7 68 47.1
Zm00001eb044470 Zea mays HOM05D007014 ORTHO05D008894 1.4e-08 62.8 65 49.2
Zm00001eb044400 Zea mays HOM05D007014 ORTHO05D008894 1.9e-08 62.4 65 49.2
ATR0680G283 Amborella trichopoda HOM05D007014 ORTHO05D008894 2.5e-08 62.0 68 47.1
TWI36G1550 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 3.2e-08 61.6 65 43.1
SalBow1G7442 Salvia bowleyana HOM05D007014 ORTHO05D008894 5.5e-08 60.8 50 50.0


User provided reference genes

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