Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C013522.2 Cucumis melo HOM05D005819 ORTHO05D006780 1.3e-108 396.4 193 100.0
CsaV3_6G012280 Cucumis sativus L. HOM05D005819 ORTHO05D006780 1.3e-97 359.8 190 92.6
ClCG02G011330 Citrullus lanatus HOM05D005819 ORTHO05D006780 1.1e-86 323.6 180 87.2
Sed0001645 Sechium edule HOM05D005819 ORTHO05D006780 3.8e-84 315.1 195 79.5
Prupe.3G227000 Prunus persica HOM05D005819 ORTHO05D006780 3.9e-65 251.9 194 66.0
GSVIVG01000441001 Vitis vinifera HOM05D005819 ORTHO05D006780 1.5e-64 250.0 195 67.7
CANSAT21G1768 Cannabis sativa HOM05D005819 ORTHO05D006780 2.2e-63 246.1 196 64.3
CiPaw.03G166600 Carya illinoinensis HOM05D005819 ORTHO05D006780 7.0e-62 241.1 196 63.8
FAN05G1257 Fragaria x ananassa HOM05D005819 ORTHO05D006780 1.5e-61 240.0 194 64.9
Glyma.03G007300 Glycine max HOM05D005819 ORTHO05D006780 3.5e-61 238.8 194 61.3
Manes.18G113901 Manihot esculenta HOM05D005819 ORTHO05D006780 5.9e-61 238.0 198 62.1
MD17G1087700 Malus domestica HOM05D005819 ORTHO05D006780 7.7e-61 237.7 200 63.5
FvH4_6g44280 Fragaria vesca HOM05D005819 ORTHO05D006780 1.0e-60 237.3 194 63.9
FAN14G4258 Fragaria x ananassa HOM05D005819 ORTHO05D006780 1.0e-60 237.3 194 63.9
Glyma.19G118800 Glycine max HOM05D005819 ORTHO05D006780 2.2e-60 236.1 194 60.8
Hma1.2p1_1090F.1_g255750 Hydrangea macrophylla HOM05D005819 ORTHO05D006780 2.2e-60 236.1 192 63.5
FAN09G3032 Fragaria x ananassa HOM05D005819 ORTHO05D006780 8.5e-60 234.2 194 63.9
TWI18G0421 Tripterygium wilfordii HOM05D005819 ORTHO05D006780 1.1e-59 233.8 197 61.9
RcHm_v2.0_Chr2g0161141 Rosa chinensis HOM05D005819 ORTHO05D006780 2.5e-59 232.6 194 62.9
Duzib248G0701 Durio zibethinus HOM05D005819 ORTHO05D006780 3.2e-59 232.3 198 63.6
arahy.Tifrunner.gnm1.ann1.7T7QMX Arachis hypogaea HOM05D005819 ORTHO05D006780 4.2e-59 231.9 195 60.5
Haze_13026 Corylus avellana HOM05D005819 ORTHO05D006780 9.4e-59 230.7 197 61.9
Sabra13G0120900 Salix brachista HOM05D005819 ORTHO05D006780 1.6e-58 229.9 200 62.5
CSS0044572 Camellia sinensis var. sinensis HOM05D005819 ORTHO05D006780 2.7e-58 229.2 192 60.9
Medtr6g071520 Medicago truncatula HOM05D005819 ORTHO05D006780 1.4e-57 226.9 193 59.6
Nn2g10488 Nelumbo nucifera HOM05D005819 ORTHO05D006780 1.4e-57 226.9 183 61.7
Gohir.A03G161900 Gossypium hirsutum HOM05D005819 ORTHO05D006780 1.8e-57 226.5 193 61.1
Thecc.02G167000 Theobroma cacao HOM05D005819 ORTHO05D006780 3.9e-57 225.3 196 60.7
FAN02G1820 Fragaria x ananassa HOM05D005819 ORTHO05D006780 8.8e-57 224.2 215 57.7
Gohir.D02G185101 Gossypium hirsutum HOM05D005819 ORTHO05D006780 1.5e-56 223.4 197 58.9
Gorai.005G207400 Gossypium raimondii HOM05D005819 ORTHO05D006780 2.0e-56 223.0 193 60.1
Lalb_Chr22g0358491 Lupinus albus HOM05D005819 ORTHO05D006780 2.0e-56 223.0 204 55.9
Ca_03448_v3 Cicer arietinum L. HOM05D005819 ORTHO05D006780 2.6e-56 222.6 194 58.8
PGR142G2655 Punica granatum HOM05D005819 ORTHO05D006780 2.6e-56 222.6 193 58.0
Potri.013G150400 Populus trichocarpa HOM05D005819 ORTHO05D006780 3.3e-56 222.2 197 58.9
Sc12g0002590 Simmondsia chinensis HOM05D005819 ORTHO05D006780 5.7e-56 221.5 193 56.5
Atru.chr6.3097 Acer truncatum HOM05D005819 ORTHO05D006780 7.4e-56 221.1 196 60.2
TPR.G7847 Trifolium pratense HOM05D005819 ORTHO05D006780 1.3e-55 220.3 198 59.6
Phvul.001G107000 Phaseolus vulgaris HOM05D005819 ORTHO05D006780 1.7e-55 219.9 195 57.4
Ciclev10016814m.g Citrus clementina HOM05D005819 ORTHO05D006780 3.7e-55 218.8 196 60.7
Migut.F00120 Erythranthe guttata HOM05D005819 ORTHO05D006780 1.4e-54 216.9 191 62.8
PSO210G2402 Papaver somniferum HOM05D005819 ORTHO05D006780 1.8e-54 216.5 190 57.9
SHI10263 Sapria himalayana HOM05D005819 ORTHO05D006780 1.8e-54 216.5 160 65.0
HanXRQChr17g0543121 Helianthus annuus HOM05D005819 ORTHO05D006780 2.4e-54 216.1 155 65.2
Medtr7g087030 Medicago truncatula HOM05D005819 ORTHO05D006780 4.1e-54 215.3 193 57.5
Aqoxy7G03432 Aquilegia oxysepala HOM05D005819 ORTHO05D006780 5.3e-54 214.9 182 58.2
A09p02550 Brassica napus HOM05D005819 ORTHO05D006780 9.1e-54 214.2 193 57.5
BraA09t35901Z Brassica rapa HOM05D005819 ORTHO05D006780 1.2e-53 213.8 193 57.5
AUR62007448 Chenopodium quinoa HOM05D005819 ORTHO05D006780 1.2e-53 213.8 179 62.0
VMungo0647G1299 Vigna mungo HOM05D005819 ORTHO05D006780 1.2e-53 213.8 195 56.9
Eucgr.K00886 Eucalyptus grandis HOM05D005819 ORTHO05D006780 1.6e-53 213.4 193 59.1
Lj1g0005576 Lotus japonicus HOM05D005819 ORTHO05D006780 1.6e-53 213.4 200 56.0
TAR626G0084 Trochodendron aralioides HOM05D005819 ORTHO05D006780 1.6e-53 213.4 196 58.7
AUR62040308 Chenopodium quinoa HOM05D005819 ORTHO05D006780 2.0e-53 213.0 178 60.1
THA.LOC104806805 Tarenaya hassleriana HOM05D005819 ORTHO05D006780 2.0e-53 213.0 197 58.4
MSTRG.14168 Avicennia marina HOM05D005819 ORTHO05D006780 2.6e-53 212.6 196 56.6
PSO170G6190 Papaver somniferum HOM05D005819 ORTHO05D006780 3.5e-53 212.2 190 56.8
Nitab4.5_0006653g0030 Nicotiana tabacum HOM05D005819 ORTHO05D006780 4.5e-53 211.8 177 62.1
Lsat_1_v5_gn_3_41801 Lactuca sativa HOM05D005819 ORTHO05D006780 5.9e-53 211.5 193 55.4
Hund06769 Selenicereus undatus HOM05D005819 ORTHO05D006780 5.9e-53 211.5 144 66.0
VMungo1383G0784 Vigna mungo HOM05D005819 ORTHO05D006780 5.9e-53 211.5 196 57.1
Nitab4.5_0004360g0020 Nicotiana tabacum HOM05D005819 ORTHO05D006780 1.0e-52 210.7 174 62.1
QL08p035991 Quercus lobata HOM05D005819 ORTHO05D006780 1.0e-52 210.7 222 53.2
PGSC0003DMG400026152 Solanum tuberosum HOM05D005819 ORTHO05D006780 1.0e-52 210.7 193 60.6
Cc05_g05680 Coffea canephora HOM05D005819 ORTHO05D006780 1.7e-52 209.9 162 61.1
BraA03t12233Z Brassica rapa HOM05D005819 ORTHO05D006780 3.8e-52 208.8 193 57.5
CAN.G640.15 Capsicum annuum HOM05D005819 ORTHO05D006780 3.8e-52 208.8 140 70.7
BcaC01g06695 Brassica carinata HOM05D005819 ORTHO05D006780 5.0e-52 208.4 193 58.5
C03p36930 Brassica napus HOM05D005819 ORTHO05D006780 5.0e-52 208.4 193 58.5
SGA_v2.0_scaffold159G37608 Striga asiatica HOM05D005819 ORTHO05D006780 5.0e-52 208.4 186 58.6
Ah.12g056190 Amaranthus hybridus HOM05D001579 ORTHO05D006780 6.5e-52 208.0 189 58.7
Rhsim04G0058700 Rhododendron simsii HOM05D005819 ORTHO05D006780 6.5e-52 208.0 181 61.9
BolC3t16000H Brassica oleracea HOM05D005819 ORTHO05D006780 8.5e-52 207.6 193 58.5
Sopen07g026700 Solanum pennellii HOM05D005819 ORTHO05D006780 1.1e-51 207.2 193 60.6
ECA246G1767 Erigeron canadensis HOM05D005819 ORTHO05D006780 1.5e-51 206.8 137 68.6
Solyc07g053150.3 Solanum lycopersicum HOM05D005819 ORTHO05D006780 1.5e-51 206.8 193 60.1
AL6G49690 Arabidopsis lyrata HOM05D005819 ORTHO05D006780 1.9e-51 206.5 125 74.4
BcaC04g23988 Brassica carinata HOM05D005819 ORTHO05D006780 1.9e-51 206.5 193 57.0
Thhalv10028999m.g Eutrema salsugineum HOM05D005819 ORTHO05D006780 2.5e-51 206.1 125 74.4
AT4G03240 Arabidopsis thaliana HOM05D005819 ORTHO05D006780 3.2e-51 205.7 125 74.4
CARHR251690 Cardamine hirsuta HOM05D005819 ORTHO05D006780 3.2e-51 205.7 199 56.3
EL10Ac2g02755 Beta vulgaris HOM05D005819 ORTHO05D006780 5.5e-51 204.9 189 58.2
Sp6g03280 Schrenkiella parvula HOM05D005819 ORTHO05D006780 5.5e-51 204.9 125 74.4
A03p30520 Brassica napus HOM05D005819 ORTHO05D006780 1.6e-50 203.4 192 55.7
Carub.0006s3382 Capsella rubella HOM05D005819 ORTHO05D006780 6.1e-50 201.4 199 55.8
SGA_v2.0_scaffold49G18319 Striga asiatica HOM05D005819 ORTHO05D006780 6.1e-50 201.4 149 63.1
EL10Ac5g12980 Beta vulgaris HOM05D005819 ORTHO05D006780 1.0e-49 200.7 197 55.8
BcaB01g02514 Brassica carinata HOM05D005819 ORTHO05D006780 4.0e-49 198.7 192 57.3
SalBow1G3361 Salvia bowleyana HOM05D005819 ORTHO05D006780 5.2e-49 198.4 191 53.4
SalBow1G8148 Salvia bowleyana HOM05D005819 ORTHO05D006780 5.2e-49 198.4 191 53.4
arahy.Tifrunner.gnm1.ann1.Q06U4P Arachis hypogaea HOM05D005819 ORTHO05D006780 2.0e-48 196.4 244 45.9
Os01g0783600 Oryza sativa ssp. japonica HOM05D005819 ORTHO05D006780 1.4e-46 190.3 135 63.7
Zm00001eb151360 Zea mays HOM05D005819 ORTHO05D006780 1.4e-46 190.3 126 66.7
SalBow6G6406 Salvia bowleyana HOM05D005819 ORTHO05D006780 3.1e-46 189.1 191 51.8
Aa31LG5G2740 Aethionema arabicum HOM05D005819 ORTHO05D006780 2.0e-45 186.4 226 48.7
Peaxi162Scf00007g01734 Petunia axillaris HOM05D005819 ORTHO05D006780 2.7e-45 186.0 189 54.5
CiPaw.04G121300 Carya illinoinensis HOM05D005819 ORTHO05D006780 4.5e-45 185.3 174 59.8
CSS0036944 Camellia sinensis var. sinensis HOM05D005819 ORTHO05D006780 1.0e-44 184.1 111 74.8
SEGI_37806 Sequoiadendron giganteum HOM05D005819 ORTHO05D006780 1.0e-44 184.1 161 56.5
Dinv13856 Davidia involucrata HOM05D005819 ORTHO05D006780 1.5e-43 180.3 149 63.8
Oeu037169.1 Olea europaea HOM05D005819 ORTHO05D006780 2.5e-43 179.5 116 72.4
Oeu005644.2 Olea europaea HOM05D005819 ORTHO05D006780 2.1e-42 176.4 116 72.4
CDE09G0293 Ceratophyllum demersum HOM05D007034 ORTHO05D006780 2.7e-42 176.0 112 73.2
unitig_749.g13948 Utricularia gibba HOM05D005819 ORTHO05D006780 3.6e-42 175.6 134 60.4
CDE02G1488 Ceratophyllum demersum HOM05D005819 ORTHO05D006780 1.0e-41 174.1 113 71.7
TWI36G1190 Tripterygium wilfordii HOM05D005819 ORTHO05D006780 2.3e-41 172.9 155 58.7
Zm00001eb034710 Zea mays HOM05D005819 ORTHO05D006780 5.2e-41 171.8 150 56.0
DCAR_009705 Daucus carota HOM05D005819 ORTHO05D006780 6.8e-41 171.4 222 45.5
Sed0008711 Sechium edule HOM05D005819 ORTHO05D006780 2.8e-39 166.0 193 50.8
Medtr6g071700 Medicago truncatula HOM05D005819 ORTHO05D006780 3.7e-39 165.6 115 67.8
RhsimUnG0197800 Rhododendron simsii HOM05D005819 ORTHO05D006780 1.4e-38 163.7 151 60.9
Mapoly0009s0241 Marchantia polymorpha HOM05D005819 ORTHO05D006780 1.6e-37 160.2 126 59.5
Pp3c9_21390 Physcomitrium patens HOM05D005819 ORTHO05D006780 3.5e-37 159.1 123 57.7
Psat3g085640 Pisum sativum HOM05D005819 ORTHO05D006780 5.9e-37 158.3 149 56.4
vmacro15799 Vaccinium macrocarpon HOM05D005819 ORTHO05D006780 1.0e-36 157.5 156 57.7
MD09G1099400 Malus domestica HOM05D005819 ORTHO05D006780 1.7e-36 156.8 122 61.5
DCAR_021205 Daucus carota HOM05D005819 ORTHO05D006780 1.5e-35 153.7 91 73.6
Dinv02570 Davidia involucrata HOM05D005819 ORTHO05D006780 6.1e-34 148.3 123 64.2
SMO140G0069 Selaginella moellendorffii HOM05D005819 ORTHO05D006780 6.8e-33 144.8 109 62.4
BcaB01g01964 Brassica carinata HOM05D005819 ORTHO05D006780 2.6e-32 142.9 93 68.8
AagrBONN_evm.TU.Sc2ySwM_117.2177 Anthoceros agrestis HOM05D005819 ORTHO05D006780 2.4e-30 136.3 109 59.6
CBR_g3856 Chara braunii HOM05D005819 ORTHO05D006780 4.3e-27 125.6 126 47.6
HanXRQChr04g0112441 Helianthus annuus HOM05D005819 ORTHO05D006780 3.1e-25 119.4 86 64.0
Cre12.g538350 Chlamydomonas reinhardtii HOM05D005819 ORTHO05D006780 4.0e-25 119.0 116 49.1
Oeu025479.1 Olea europaea HOM05D005819 ORTHO05D006780 4.0e-25 119.0 73 74.0
PRCOL_00006727 Prasinoderma coloniale HOM05D005819 ORTHO05D006780 1.9e-19 100.1 95 48.4
COL.COLO4_13056 Corchorus olitorius HOM05D005819 ORTHO05D006780 5.6e-19 98.6 125 49.6
MCO13G341 Micromonas commoda HOM05D005819 ORTHO05D006780 7.3e-19 98.2 111 42.3
HPP92_008010 Vanilla planifolia HOM05D005819 ORTHO05D006780 3.1e-17 92.8 103 50.5
Haze_01489 Corylus avellana HOM05D005819 ORTHO05D006780 3.4e-16 89.4 136 44.9
ATR1132G123 Amborella trichopoda HOM05D005819 ORTHO05D006780 3.7e-15 85.9 64 62.5
Cfa024975 Carpinus fangiana HOM05D005819 ORTHO05D006780 9.2e-14 81.3 144 34.7
TAR623G0306 Trochodendron aralioides HOM05D003242 ORTHO05D003593 1.1e-06 57.8 43 58.1
Actinidia30496 Actinidia chinensis HOM05D005819 ORTHO05D006780 7.1e-06 55.1 42 59.5


User provided reference genes

Program Settings