Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C013428.2 Cucumis melo HOM05D006646 ORTHO05D008279 1.0e-88 330.1 175 100.0
CsaV3_7G000290 Cucumis sativus L. HOM05D006646 ORTHO05D008279 2.4e-77 292.4 162 93.8
ClCG02G004640 Citrullus lanatus HOM05D006646 ORTHO05D008279 1.3e-67 260.0 154 88.3
Sed0000071 Sechium edule HOM05D006646 ORTHO05D008279 2.2e-67 259.2 174 78.7
Sed0001649 Sechium edule HOM05D006646 ORTHO05D008279 2.4e-61 239.2 173 74.0
QL11p045794 Quercus lobata HOM05D006646 ORTHO05D008279 2.3e-48 196.1 168 64.3
Potri.009G122500 Populus trichocarpa HOM05D006646 ORTHO05D008279 3.4e-47 192.2 169 64.5
CiPaw.06G130600 Carya illinoinensis HOM05D006646 ORTHO05D008279 4.4e-47 191.8 141 70.2
Thecc.02G077600 Theobroma cacao HOM05D006646 ORTHO05D008279 1.3e-46 190.3 172 59.9
Ciclev10028627m.g Citrus clementina HOM05D006646 ORTHO05D008279 1.7e-46 189.9 141 70.2
MD10G1065400 Malus domestica HOM05D006646 ORTHO05D008279 9.1e-45 184.1 171 62.0
Gohir.A12G041400 Gossypium hirsutum HOM05D006646 ORTHO05D008279 2.0e-44 183.0 163 63.8
COL.COLO4_26029 Corchorus olitorius HOM05D006646 ORTHO05D008279 2.7e-44 182.6 177 61.0
Gohir.D12G030800 Gossypium hirsutum HOM05D006646 ORTHO05D008279 5.9e-44 181.4 163 63.8
Gorai.008G031700 Gossypium raimondii HOM05D006646 ORTHO05D008279 5.9e-44 181.4 163 63.8
Manes.04G084900 Manihot esculenta HOM05D006646 ORTHO05D008279 1.3e-43 180.3 165 60.0
Dinv23471 Davidia involucrata HOM05D006646 ORTHO05D008279 2.3e-43 179.5 166 59.0
Duzib132G1122 Durio zibethinus HOM05D006646 ORTHO05D008279 3.8e-43 178.7 173 61.3
TAR376G0115 Trochodendron aralioides HOM05D006646 ORTHO05D008279 1.5e-42 176.8 167 58.1
Prupe.8G087400 Prunus persica HOM05D006646 ORTHO05D008279 1.9e-42 176.4 165 60.0
CSS0027643 Camellia sinensis var. sinensis HOM05D006646 ORTHO05D008279 4.2e-42 175.3 158 57.0
Hma1.2p1_0851F.1_g228260 Hydrangea macrophylla HOM05D006646 ORTHO05D008279 5.6e-42 174.9 140 65.7
Cfa005079 Carpinus fangiana HOM05D006646 ORTHO05D008279 9.5e-42 174.1 142 63.4
CSS0016085 Camellia sinensis var. sinensis HOM05D006646 ORTHO05D008279 1.6e-41 173.3 168 54.2
Medtr4g071330 Medicago truncatula HOM05D006646 ORTHO05D008279 1.0e-40 170.6 149 58.4
arahy.Tifrunner.gnm1.ann1.I36BMJ Arachis hypogaea HOM05D006646 ORTHO05D008279 1.4e-40 170.2 165 55.2
GSVIVG01024200001 Vitis vinifera HOM05D006646 ORTHO05D008279 1.4e-40 170.2 143 62.9
Eucgr.G01718 Eucalyptus grandis HOM05D006646 ORTHO05D008279 4.0e-40 168.7 140 65.0
FAN27G0283 Fragaria x ananassa HOM05D006646 ORTHO05D008279 4.0e-40 168.7 126 65.9
Psat0s2721g0040 Pisum sativum HOM05D006646 ORTHO05D008279 6.8e-40 167.9 164 54.9
TWI75G0841 Tripterygium wilfordii HOM05D006646 ORTHO05D008279 6.8e-40 167.9 163 60.1
Cpa.g.sc150.36 Carica papaya HOM05D006646 ORTHO05D008279 8.9e-40 167.5 154 59.7
Lj3g0021213 Lotus japonicus HOM05D006646 ORTHO05D008279 1.2e-39 167.2 161 57.1
FvH4_2g10110 Fragaria vesca HOM05D006646 ORTHO05D008279 4.4e-39 165.2 152 58.6
FAN15G0580 Fragaria x ananassa HOM05D006646 ORTHO05D008279 4.4e-39 165.2 152 58.6
Atru.chr5.3116 Acer truncatum HOM05D006646 ORTHO05D008279 5.7e-39 164.9 143 60.8
arahy.Tifrunner.gnm1.ann1.RI2JL3 Arachis hypogaea HOM05D006646 ORTHO05D008279 5.7e-39 164.9 138 63.8
Oeu008579.1 Olea europaea HOM05D006646 ORTHO05D008279 5.7e-39 164.9 176 54.0
TPR.G16241 Trifolium pratense HOM05D006646 ORTHO05D008279 5.7e-39 164.9 154 55.8
Glyma.11G112300 Glycine max HOM05D006646 ORTHO05D008279 9.8e-39 164.1 131 64.1
Cc02_g17030 Coffea canephora HOM05D006646 ORTHO05D008279 1.3e-38 163.7 149 58.4
RcHm_v2.0_Chr6g0267071 Rosa chinensis HOM05D006646 ORTHO05D008279 1.3e-38 163.7 152 58.6
Peaxi162Scf00016g00142 Petunia axillaris HOM05D006646 ORTHO05D008279 1.7e-38 163.3 141 61.7
THA.LOC104807761 Tarenaya hassleriana HOM05D006646 ORTHO05D008279 2.2e-38 162.9 138 61.6
Lalb_Chr01g0002221 Lupinus albus HOM05D006646 ORTHO05D008279 2.9e-38 162.5 166 57.2
FAN24G1192 Fragaria x ananassa HOM05D006646 ORTHO05D008279 3.7e-38 162.2 152 57.9
MSTRG.16840 Avicennia marina HOM05D006646 ORTHO05D008279 4.9e-38 161.8 147 58.5
PSO541G0619 Papaver somniferum HOM05D006646 ORTHO05D008279 4.9e-38 161.8 135 65.2
Solyc01g110270.3 Solanum lycopersicum HOM05D006646 ORTHO05D008279 6.4e-38 161.4 160 57.5
Sopen01g052420 Solanum pennellii HOM05D006646 ORTHO05D008279 6.4e-38 161.4 160 57.5
PGSC0003DMG400003128 Solanum tuberosum HOM05D006646 ORTHO05D008279 6.4e-38 161.4 160 57.5
VMungo1127G0939 Vigna mungo HOM05D006646 ORTHO05D008279 6.4e-38 161.4 155 60.0
ATR0661G343 Amborella trichopoda HOM05D006646 ORTHO05D008279 1.4e-37 160.2 148 59.5
SGA_v2.0_scaffold58G20474 Striga asiatica HOM05D006646 ORTHO05D008279 1.8e-37 159.8 112 68.8
CAN.G170.87 Capsicum annuum HOM05D006646 ORTHO05D008279 2.4e-37 159.5 142 60.6
Phvul.011G040400 Phaseolus vulgaris HOM05D006646 ORTHO05D008279 2.4e-37 159.5 157 54.1
Migut.B00188 Erythranthe guttata HOM05D006646 ORTHO05D008279 3.2e-37 159.1 145 58.6
Nn6g32216 Nelumbo nucifera HOM05D006646 ORTHO05D008279 1.2e-36 157.1 143 58.0
vmacro02064 Vaccinium macrocarpon HOM05D006646 ORTHO05D008279 1.2e-36 157.1 137 61.3
Ca_20923_v3 Cicer arietinum L. HOM05D006646 ORTHO05D008279 1.6e-36 156.8 164 53.0
PGR042G2699 Punica granatum HOM05D006646 ORTHO05D008279 1.6e-36 156.8 155 56.8
Aqoxy6G02397 Aquilegia oxysepala HOM05D006646 ORTHO05D008279 2.0e-36 156.4 160 51.9
DCAR_022798 Daucus carota HOM05D006646 ORTHO05D008279 2.7e-36 156.0 146 56.8
MBI05_g30638_MAGBIO Magnolia biondii HOM05D006646 ORTHO05D008279 2.7e-36 156.0 144 58.3
Haze_02302 Corylus avellana HOM05D006646 ORTHO05D008279 3.5e-36 155.6 206 47.1
CDE09G0634 Ceratophyllum demersum HOM05D006646 ORTHO05D008279 4.6e-36 155.2 138 63.0
HanXRQChr05g0139661 Helianthus annuus HOM05D006646 ORTHO05D008279 5.9e-36 154.8 157 52.9
Nitab4.5_0010034g0020 Nicotiana tabacum HOM05D006646 ORTHO05D008279 1.3e-35 153.7 156 56.4
EL10Ac9g21659 Beta vulgaris HOM05D006646 ORTHO05D008279 2.9e-35 152.5 148 53.4
CDE02G3850 Ceratophyllum demersum HOM05D006646 ORTHO05D008279 1.1e-34 150.6 138 60.9
Aa31LG6G16210 Aethionema arabicum HOM05D006646 ORTHO05D008279 3.3e-34 149.1 144 58.3
CARHR247710 Cardamine hirsuta HOM05D006646 ORTHO05D008279 3.3e-34 149.1 140 60.0
Lsat_1_v5_gn_4_68441 Lactuca sativa HOM05D006646 ORTHO05D008279 5.6e-34 148.3 132 56.8
AUR62016804 Chenopodium quinoa HOM05D006646 ORTHO05D008279 1.2e-33 147.1 164 50.6
unitig_32.g11060 Utricularia gibba HOM05D006646 ORTHO05D008279 2.1e-33 146.4 122 63.9
Sp7g36790 Schrenkiella parvula HOM05D006646 ORTHO05D008279 2.8e-33 146.0 140 60.0
BolC7t46749H Brassica oleracea HOM05D006646 ORTHO05D008279 3.6e-33 145.6 141 58.9
A06p48720 Brassica napus HOM05D006646 ORTHO05D008279 4.7e-33 145.2 166 52.4
SalBow6G1011 Salvia bowleyana HOM05D006646 ORTHO05D008279 4.7e-33 145.2 147 53.7
BcaNung01943 Brassica carinata HOM05D006646 ORTHO05D008279 1.0e-32 144.1 141 58.2
C07p63380 Brassica napus HOM05D006646 ORTHO05D008279 1.0e-32 144.1 141 58.2
BraA06t27738Z Brassica rapa HOM05D006646 ORTHO05D008279 1.0e-32 144.1 166 51.8
Thhalv10025960m.g Eutrema salsugineum HOM05D006646 ORTHO05D008279 2.3e-32 142.9 140 60.0
AT2G21350 Arabidopsis thaliana HOM05D006646 ORTHO05D008279 3.1e-32 142.5 130 59.2
ECA247G1974 Erigeron canadensis HOM05D006646 ORTHO05D008279 3.1e-32 142.5 143 51.7
Carub.0007s0091 Capsella rubella HOM05D006646 ORTHO05D008279 4.0e-32 142.1 140 58.6
Os10g0512500 Oryza sativa ssp. japonica HOM05D006646 ORTHO05D008279 5.2e-32 141.7 135 57.0
AL7G10980 Arabidopsis lyrata HOM05D006646 ORTHO05D008279 3.4e-31 139.0 172 50.6
HPP92_007403 Vanilla planifolia HOM05D006646 ORTHO05D008279 4.4e-31 138.7 132 53.0
Hund06269 Selenicereus undatus HOM05D006646 ORTHO05D008279 5.8e-31 138.3 150 50.7
Sc18g0005310 Simmondsia chinensis HOM05D006646 ORTHO05D008279 9.8e-31 137.5 126 55.6
AT4G39040 Arabidopsis thaliana HOM05D006646 ORTHO05D008279 1.7e-30 136.7 109 66.1
Carub.0004s0039 Capsella rubella HOM05D006646 ORTHO05D008279 1.7e-30 136.7 124 58.9
AL4G10520 Arabidopsis lyrata HOM05D006646 ORTHO05D008279 5.4e-29 131.7 133 56.4
CARHR112230 Cardamine hirsuta HOM05D006646 ORTHO05D008279 1.6e-28 130.2 102 65.7
BcaC02g08796 Brassica carinata HOM05D006646 ORTHO05D008279 2.3e-27 126.3 98 66.3
C04p50570 Brassica napus HOM05D006646 ORTHO05D008279 2.3e-27 126.3 98 66.3
BolC4t26655H Brassica oleracea HOM05D006646 ORTHO05D008279 2.3e-27 126.3 98 66.3
A04p16110 Brassica napus HOM05D006646 ORTHO05D008279 3.3e-26 122.5 94 67.0
BraA04t17251Z Brassica rapa HOM05D006646 ORTHO05D008279 3.3e-26 122.5 94 67.0
Sp4g00530 Schrenkiella parvula HOM05D006646 ORTHO05D008279 3.6e-25 119.0 120 54.2
Thhalv10000312m.g Eutrema salsugineum HOM05D006646 ORTHO05D008279 6.2e-25 118.2 96 63.5
Mapoly0113s0060 Marchantia polymorpha HOM05D006646 ORTHO05D008279 4.1e-21 105.5 129 45.0
Nitab4.5_0002723g0110 Nicotiana tabacum HOM05D006646 ORTHO05D008279 4.1e-21 105.5 101 61.4
AUR62010412 Chenopodium quinoa HOM05D006646 ORTHO05D008279 1.2e-20 104.0 149 41.6
CBR_g11057 Chara braunii HOM05D006646 ORTHO05D008279 1.1e-18 97.4 168 38.7
AagrBONN_evm.TU.Sc2ySwM_344.4239 Anthoceros agrestis HOM05D006646 ORTHO05D008279 1.5e-18 97.1 107 46.7
Pp3c1_22260 Physcomitrium patens HOM05D006646 ORTHO05D008279 3.6e-17 92.4 133 39.8
CANSAT11G0453 Cannabis sativa HOM05D006646 ORTHO05D008279 2.3e-16 89.7 64 68.8
FAN24G0918 Fragaria x ananassa HOM05D001806 ORTHO05D002069 4.4e-15 85.5 88 52.3
FAN09G3166 Fragaria x ananassa HOM05D006646 ORTHO05D008279 5.8e-15 85.1 89 51.7
arahy.Tifrunner.gnm1.ann1.1G50NI Arachis hypogaea HOM05D006646 ORTHO05D008279 9.9e-15 84.3 55 76.4
FAN05G0067 Fragaria x ananassa HOM05D006646 ORTHO05D008279 9.9e-15 84.3 64 60.9
FAN05G1359 Fragaria x ananassa HOM05D006646 ORTHO05D008279 9.9e-15 84.3 64 60.9
FAN19G2814 Fragaria x ananassa HOM05D006646 ORTHO05D008279 1.3e-14 84.0 87 52.9
BcaNung01286 Brassica carinata HOM05D006646 ORTHO05D008279 4.9e-14 82.0 112 50.9
FAN18G1095 Fragaria x ananassa HOM05D006646 ORTHO05D008279 1.1e-13 80.9 59 62.7
Zm00001eb220380 Zea mays HOM05D006646 ORTHO05D008279 1.9e-13 80.1 51 74.5
Lj5P190T58 Lonicera japonica HOM05D006646 ORTHO05D008279 7.1e-13 78.2 78 52.6
Haze_22123 Corylus avellana HOM05D006646 ORTHO05D008279 1.6e-12 77.0 49 75.5
SMO367G1025 Selaginella moellendorffii HOM05D006646 ORTHO05D008279 4.3e-10 68.9 80 45.0


User provided reference genes

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