Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 3.5e-64 249.2 261 100.0
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 1.7e-63 246.9 261 99.2
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 3.2e-62 242.7 261 98.9
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 1.5e-54 217.2 262 95.4
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 1.2e-51 207.6 261 92.7
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 1.2e-51 207.6 261 92.7
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 2.2e-50 203.4 260 91.2
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 5.4e-49 198.7 264 90.5
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 7.0e-49 198.4 261 90.4
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 1.2e-48 197.6 259 89.2
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 3.5e-48 196.1 262 90.8
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 5.9e-48 195.3 263 89.4
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 7.7e-48 194.9 261 87.0
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 2.9e-47 193.0 260 90.8
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 1.5e-46 190.7 262 88.9
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 3.2e-46 189.5 261 89.3
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 4.2e-46 189.1 261 86.2
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 3.6e-45 186.0 263 84.4
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 1.4e-44 184.1 262 89.3
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 3.0e-44 183.0 262 85.5
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 6.8e-44 181.8 262 86.3
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 8.8e-44 181.4 262 87.4
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 9.8e-43 177.9 259 86.5
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 9.8e-43 177.9 263 87.1
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 3.7e-42 176.0 267 85.0
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 6.3e-42 175.3 263 85.6
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 1.1e-41 174.5 262 78.2
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 7.0e-41 171.8 265 83.8
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 7.0e-41 171.8 280 83.6
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 5.9e-40 168.7 268 75.0
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 4.3e-38 162.5 264 81.1
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 9.5e-38 161.4 247 85.4
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 3.6e-37 159.5 260 80.4
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 1.0e-36 157.9 263 85.9
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 1.8e-36 157.1 247 85.4
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 1.8e-36 157.1 244 82.0
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 3.0e-36 156.4 262 81.3
CAN.G95.2 Capsicum annuum HOM05D004463 ORTHO05D004724 5.7e-35 152.1 257 78.6
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 2.2e-34 150.2 261 82.0
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 6.4e-34 148.7 262 80.5
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 7.0e-33 145.2 261 79.3
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 1.6e-32 144.1 259 64.5
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 4.6e-32 142.5 261 80.8
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 2.3e-31 140.2 261 77.8
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 2.3e-31 140.2 267 56.6
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 1.2e-29 134.4 266 75.9
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 2.1e-29 133.7 262 74.0
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 4.7e-29 132.5 247 78.9
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 4.7e-29 132.5 245 79.6
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 6.2e-29 132.1 248 79.8
Haze_03437 Corylus avellana HOM05D004463 ORTHO05D004724 3.1e-28 129.8 236 83.5
Hund00218 Selenicereus undatus HOM05D004463 ORTHO05D004724 3.1e-28 129.8 243 74.9
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 2.0e-27 127.1 240 80.4
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 3.4e-27 126.3 250 79.2
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.4e-27 126.3 250 79.2
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 7.5e-27 125.2 251 78.9
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 7.5e-27 125.2 249 79.5
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 1.3e-26 124.4 246 78.0
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 1.3e-26 124.4 269 69.9
TWI75G1243 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 1.7e-26 124.0 267 67.8
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 2.9e-26 123.2 268 69.8
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 3.7e-26 122.9 269 69.5
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 6.4e-26 122.1 261 71.3
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 8.3e-26 121.7 249 78.7
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 8.3e-26 121.7 246 77.6
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 5.4e-25 119.0 262 74.0
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 1.2e-24 117.9 245 78.8
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 7.8e-24 115.2 256 74.2
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 1.0e-23 114.8 261 74.7
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 2.5e-22 110.2 214 62.6
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 1.6e-21 107.5 280 39.3
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 1.6e-21 107.5 65 90.8
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.8e-21 106.7 261 75.1
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 3.6e-21 106.3 261 72.8
Rhsim05G0068600 Rhododendron simsii HOM05D004463 ORTHO05D004724 8.1e-21 105.1 267 74.5
Duzib132G0628 Durio zibethinus HOM05D004463 ORTHO05D004724 6.8e-20 102.1 221 79.6
Hma1.2p1_0066F.1_g035800 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 4.4e-19 99.4 266 68.0
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 1.3e-18 97.8 239 75.3
AL7G10930 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 1.7e-18 97.4 246 76.0
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 6.4e-18 95.5 247 66.8
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 8.3e-18 95.1 251 72.9
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 1.1e-17 94.7 252 72.6
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 2.4e-17 93.6 252 63.9
Nn5g29212 Nelumbo nucifera HOM05D004463 ORTHO05D004724 1.6e-16 90.9 144 81.9
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 2.1e-16 90.5 252 71.8
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 2.7e-16 90.1 252 72.6
EL10Ac1g00556 Beta vulgaris HOM05D004463 ORTHO05D004724 4.6e-16 89.4 332 59.0
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 4.6e-16 89.4 248 74.6
CSS0016875 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 3.9e-15 86.3 245 73.5
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 3.9e-15 86.3 134 83.6
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 6.6e-15 85.5 218 73.9
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 8.6e-15 85.1 64 68.8
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 1.1e-14 84.7 135 83.0
Thecc.08G037600 Theobroma cacao HOM05D004463 ORTHO05D004724 1.5e-14 84.3 51 74.5
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 7.3e-14 82.0 50 70.0
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 9.5e-14 81.6 248 71.8
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 2.1e-13 80.5 246 71.1
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 2.8e-13 80.1 51 66.7
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 2.8e-13 80.1 246 72.4
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 4.7e-13 79.3 244 68.9
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 4.7e-13 79.3 65 64.6
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 1.1e-12 78.2 52 69.2
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 1.4e-12 77.8 52 69.2
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 1.4e-12 77.8 52 69.2
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 1.8e-12 77.4 49 69.4
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 1.8e-12 77.4 49 69.4
Lj9P382T32 Lonicera japonica HOM05D004463 ORTHO05D004724 1.8e-12 77.4 156 72.4
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 4.0e-12 76.3 238 72.3
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 6.8e-12 75.5 56 64.3
TWI36G1578 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 8.9e-12 75.1 51 66.7
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 1.2e-11 74.7 44 72.7
SGA_v2.0_scaffold326G48748 Striga asiatica HOM05D004463 ORTHO05D004724 3.4e-11 73.2 51 64.7
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 4.4e-11 72.8 50 62.0
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 4.4e-11 72.8 65 52.3
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 5.8e-11 72.4 47 72.3
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 5.8e-11 72.4 47 72.3
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 5.8e-11 72.4 216 38.0
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 7.6e-11 72.0 51 66.7
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 7.6e-11 72.0 51 64.7
MBI19_g03564_MAGBIO Magnolia biondii HOM05D004463 ORTHO05D004724 9.9e-11 71.6 217 76.0
Zm00001eb022680 Zea mays HOM05D004463 ORTHO05D004724 1.3e-10 71.2 259 66.0
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 1.7e-10 70.9 246 64.2
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 2.4e-09 67.0 249 65.1
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 5.4e-09 65.9 48 64.6
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 5.4e-09 65.9 135 78.5
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 7.1e-09 65.5 51 60.8
AUR62010398 Chenopodium quinoa HOM05D004463 ORTHO05D004724 9.2e-09 65.1 109 92.7
AUR62034566 Chenopodium quinoa HOM05D004463 ORTHO05D004724 9.2e-09 65.1 58 53.4
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 1.6e-08 64.3 50 62.0
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 2.7e-08 63.5 51 58.8
FAN10G2262 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.5e-08 63.2 206 71.8
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 4.6e-08 62.8 43 67.4
Peaxi162Scf00684g00132 Petunia axillaris HOM05D004463 ORTHO05D004724 4.6e-08 62.8 73 61.6
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 4.6e-08 62.8 43 62.8
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 6.0e-08 62.4 51 58.8
AUR62016820 Chenopodium quinoa HOM05D004463 ORTHO05D004724 7.8e-08 62.0 106 93.4
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 1.0e-07 61.6 51 58.8
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 2.3e-07 60.5 51 56.9
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 2.3e-07 60.5 49 53.1
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 2.3e-07 60.5 51 56.9
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 3.0e-07 60.1 42 64.3
Nn6g32238 Nelumbo nucifera HOM05D004463 ORTHO05D004724 3.0e-07 60.1 34 79.4
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 5.1e-07 59.3 43 60.5
FvH4_7g21972 Fragaria vesca HOM05D004463 ORTHO05D004724 5.1e-07 59.3 43 65.1
FAN01G1741 Fragaria x ananassa HOM05D004463 ORTHO05D004724 5.1e-07 59.3 43 65.1
FAN06G0682 Fragaria x ananassa HOM05D004463 ORTHO05D004724 5.1e-07 59.3 43 65.1
FAN06G1248 Fragaria x ananassa HOM05D004463 ORTHO05D004724 5.1e-07 59.3 43 65.1
RcHm_v2.0_Chr1g0366331 Rosa chinensis HOM05D004463 ORTHO05D004724 5.1e-07 59.3 43 65.1
GSVIVG01016581001 Vitis vinifera HOM05D004463 ORTHO05D004724 5.1e-07 59.3 51 56.9
Cfa005098 Carpinus fangiana HOM05D065658 ORTHO05D004724 6.6e-07 58.9 45 60.0
Prupe.2G231800 Prunus persica HOM05D004463 ORTHO05D004724 6.6e-07 58.9 43 62.8
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 6.6e-07 58.9 48 58.3
Cfa001504 Carpinus fangiana HOM05D001680 ORTHO05D001596 8.6e-07 58.5 43 62.8
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 8.6e-07 58.5 43 62.8
Hma1.2p1_0727F.1_g209210 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 8.6e-07 58.5 43 60.5
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 1.1e-06 58.2 50 52.0
FAN03G3339 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.9e-06 57.4 43 62.8
MD01G1124300 Malus domestica HOM05D004463 ORTHO05D004724 1.9e-06 57.4 42 59.5
Gorai.011G255700 Gossypium raimondii HOM05D004463 ORTHO05D004724 2.5e-06 57.0 42 59.5
Sc20g0004810 Simmondsia chinensis HOM05D004463 ORTHO05D004724 4.3e-06 56.2 35 71.4
Nitab4.5_0001370g0080 Nicotiana tabacum HOM05D004463 ORTHO05D004724 7.3e-06 55.5 47 57.4


User provided reference genes

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