Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 6.3e-166 587.4 305 100.0
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 1.3e-139 500.0 343 80.8
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 1.1e-138 496.9 343 81.0
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 4.1e-133 478.4 316 83.9
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 1.8e-112 409.8 284 77.5
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 3.5e-108 395.6 337 65.9
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 1.0e-107 394.0 344 65.1
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 1.3e-107 393.7 341 66.3
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 2.1e-105 386.3 320 67.5
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 1.0e-104 384.0 244 79.9
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 1.4e-104 383.6 321 66.0
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 3.1e-104 382.5 333 66.1
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 2.0e-103 379.8 344 63.7
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 7.5e-103 377.9 340 63.2
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 3.7e-102 375.6 342 62.9
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 4.9e-102 375.2 279 71.3
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 1.4e-101 373.6 278 73.0
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 1.9e-101 373.2 306 67.6
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 5.4e-101 371.7 342 62.3
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 1.2e-100 370.5 348 62.1
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 1.6e-100 370.2 320 64.7
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 2.0e-100 369.8 327 64.2
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 2.7e-100 369.4 285 70.2
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 7.8e-100 367.9 280 69.6
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 1.7e-99 366.7 347 59.4
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 5.0e-99 365.2 299 68.2
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 6.6e-99 364.8 280 70.7
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 1.5e-98 363.6 343 61.2
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 2.5e-98 362.8 347 58.5
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 3.3e-98 362.5 257 74.3
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 7.3e-98 361.3 280 70.0
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 9.5e-98 360.9 255 74.5
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 1.6e-97 360.1 276 70.7
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 3.6e-97 359.0 276 70.3
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 6.2e-97 358.2 321 61.1
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 8.1e-97 357.8 288 67.4
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 4.0e-96 355.5 280 68.6
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 5.2e-96 355.1 286 68.2
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 6.8e-96 354.8 276 67.8
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 8.9e-96 354.4 280 66.1
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 1.5e-95 353.6 280 68.2
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 2.0e-95 353.2 318 62.3
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 3.4e-95 352.4 276 67.4
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 3.4e-95 352.4 337 59.9
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 7.5e-95 351.3 322 60.9
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 7.5e-95 351.3 280 67.5
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 9.8e-95 350.9 296 64.5
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 1.3e-94 350.5 333 60.4
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 2.2e-94 349.7 341 58.7
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 3.7e-94 349.0 313 59.7
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 1.4e-93 347.1 354 57.1
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 1.4e-93 347.1 280 67.9
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 1.9e-93 346.7 324 59.9
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 2.4e-93 346.3 297 63.6
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 3.2e-93 345.9 337 60.2
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 4.1e-93 345.5 280 66.4
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 4.1e-93 345.5 320 60.0
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 9.2e-93 344.4 281 64.8
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 1.6e-92 343.6 339 59.9
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 2.7e-92 342.8 314 62.1
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 7.8e-92 341.3 352 58.2
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 1.7e-91 340.1 278 66.5
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 3.9e-91 339.0 319 59.2
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 6.6e-91 338.2 278 65.5
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 6.6e-91 338.2 278 65.8
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 8.6e-91 337.8 279 65.6
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 1.5e-90 337.0 279 65.2
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 1.5e-90 337.0 313 59.7
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.5e-90 337.0 266 69.9
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.9e-90 336.7 266 69.9
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.9e-90 336.7 247 72.5
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 2.5e-90 336.3 294 63.3
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 7.3e-90 334.7 275 65.5
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 1.2e-89 334.0 367 55.3
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 3.6e-89 332.4 249 72.3
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 8.1e-89 331.3 324 59.0
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 1.8e-88 330.1 250 71.6
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 4.0e-88 328.9 292 65.1
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 3.4e-87 325.9 278 61.9
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 5.8e-87 325.1 350 55.7
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 5.8e-87 325.1 355 54.4
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 2.9e-86 322.8 289 61.6
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 8.4e-86 321.2 216 76.4
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 2.4e-85 319.7 308 59.4
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 7.1e-85 318.2 263 69.6
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 1.2e-84 317.4 221 74.2
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 2.3e-83 313.2 332 54.5
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 5.1e-83 312.0 284 63.0
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 6.6e-83 311.6 197 79.7
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 4.7e-81 305.4 304 59.2
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 5.6e-74 282.0 198 71.2
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 4.5e-71 272.3 260 59.2
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 2.5e-66 256.5 257 61.1
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 3.3e-66 256.1 336 52.1
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 2.8e-65 253.1 207 67.1
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 1.2e-63 247.7 264 51.5
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 3.4e-63 246.1 355 46.2
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 1.4e-61 240.7 277 48.7
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 8.2e-57 224.9 289 46.0
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 9.0e-56 221.5 267 48.7
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 7.6e-55 218.4 195 58.5
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 6.3e-49 198.7 245 48.2
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 4.5e-47 192.6 148 70.9
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 2.1e-44 183.7 146 67.8
TAR381G0871 Trochodendron aralioides HOM05D005703 ORTHO05D006643 3.6e-44 183.0 136 69.1
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 1.9e-42 177.2 114 79.8
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 2.8e-41 173.3 198 52.5
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 4.1e-40 169.5 186 54.3
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 7.2e-37 158.7 188 49.5
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 3.6e-36 156.4 185 51.4
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 3.0e-35 153.3 155 56.8
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 1.7e-33 147.5 225 44.9
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 8.2e-33 145.2 214 44.9
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 1.8e-32 144.1 212 43.9
Potri.009G121902 Populus trichocarpa HOM05D005703 ORTHO05D006643 7.7e-31 138.7 106 68.9
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 1.0e-27 128.3 136 56.6
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 1.8e-27 127.5 211 43.1
QL11p045593 Quercus lobata HOM05D005703 ORTHO05D006643 2.3e-27 127.1 72 83.3
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 3.3e-26 123.2 79 84.8
SEGI_33335 Sequoiadendron giganteum HOM05D005703 ORTHO05D006643 1.5e-21 107.8 90 58.9
CBR_g49480 Chara braunii HOM05D005703 ORTHO05D006643 6.1e-20 102.4 204 33.3
PRCOL_00000952 Prasinoderma coloniale HOM05D005703 ORTHO05D006643 9.7e-18 95.1 208 31.2
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 2.2e-17 94.0 151 41.7
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 3.1e-16 90.1 65 70.8
C03p56750 Brassica napus HOM05D005703 ORTHO05D006643 4.5e-15 86.3 130 40.8
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 5.0e-14 82.8 65 64.6
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 8.5e-14 82.0 81 55.6
Cre08.g372000 Chlamydomonas reinhardtii HOM05D005703 ORTHO05D006643 3.2e-13 80.1 211 29.4
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 5.2e-11 72.8 57 64.9
TAR381G1022 Trochodendron aralioides HOM05D005703 ORTHO05D006643 2.8e-09 67.0 99 43.4


User provided reference genes

Program Settings