Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C013418.2 Cucumis melo HOM05D006147 ORTHO05D007501 1.1e-26 122.5 59 100.0
CsaV3_7G000410 Cucumis sativus L. HOM05D006147 ORTHO05D007501 9.1e-13 76.3 59 71.2
TAR628G0064 Trochodendron aralioides HOM05D006147 ORTHO05D007501 3.8e-11 70.9 58 65.5
ECA233G5423 Erigeron canadensis HOM05D006147 ORTHO05D001140 5.0e-11 70.5 58 63.8
Lsat_1_v5_gn_8_127980 Lactuca sativa HOM05D006147 ORTHO05D007501 5.0e-11 70.5 58 62.1
Sed0012779 Sechium edule HOM05D006147 ORTHO05D007501 5.0e-11 70.5 59 64.4
Potri.009G124800 Populus trichocarpa HOM05D006147 ORTHO05D007501 6.5e-11 70.1 59 64.4
ClCG02G004540 Citrullus lanatus HOM05D006147 ORTHO05D007501 1.1e-10 69.3 59 64.4
Sabra09G0095800 Salix brachista HOM05D006147 ORTHO05D007501 1.1e-10 69.3 59 62.7
EL10Ac9g21633 Beta vulgaris HOM05D006147 ORTHO05D007501 1.4e-10 68.9 58 60.3
Cfa005114 Carpinus fangiana HOM05D006147 ORTHO05D007501 2.5e-10 68.2 59 62.7
QL11p046465 Quercus lobata HOM05D006147 ORTHO05D007501 2.5e-10 68.2 58 62.1
Haze_02237 Corylus avellana HOM05D006147 ORTHO05D007501 4.2e-10 67.4 59 61.0
DCAR_003686 Daucus carota HOM05D006147 ORTHO05D007501 4.2e-10 67.4 59 61.0
Oeu055635.1 Olea europaea HOM05D006147 ORTHO05D007501 4.2e-10 67.4 59 59.3
PSO210G6769 Papaver somniferum HOM05D006147 ORTHO05D007501 5.5e-10 67.0 58 60.3
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 7.2e-10 66.6 59 61.0
vmacro17420 Vaccinium macrocarpon HOM05D006147 ORTHO05D007501 7.2e-10 66.6 58 58.6
AUR62010384 Chenopodium quinoa HOM05D006147 ORTHO05D007501 9.4e-10 66.2 58 56.9
Duzib248G0035 Durio zibethinus HOM05D006147 ORTHO05D007501 9.4e-10 66.2 59 61.0
Gohir.A03G199400 Gossypium hirsutum HOM05D006147 ORTHO05D007501 9.4e-10 66.2 59 61.0
TWI31G1450 Tripterygium wilfordii HOM05D006147 ORTHO05D007501 9.4e-10 66.2 59 61.0
CANSAT11G2690 Cannabis sativa HOM05D006147 ORTHO05D007501 1.2e-09 65.9 59 61.0
Cpa.g.sc150.15 Carica papaya HOM05D006147 ORTHO05D007501 1.2e-09 65.9 59 61.0
CiPaw.05G073500 Carya illinoinensis HOM05D006147 ORTHO05D007501 1.2e-09 65.9 59 62.7
Nn4g26316 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.2e-09 65.9 58 60.3
Nn6g32490 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.2e-09 65.9 58 60.3
PSO170G3006 Papaver somniferum HOM05D006147 ORTHO05D007501 1.6e-09 65.5 57 59.6
PGR042G0282 Punica granatum HOM05D006147 ORTHO05D007501 1.6e-09 65.5 57 59.6
AUR62016834 Chenopodium quinoa HOM05D006147 ORTHO05D007501 2.1e-09 65.1 58 56.9
Rhsim05G0068100 Rhododendron simsii HOM05D006147 ORTHO05D007501 2.1e-09 65.1 58 58.6
Solyc09g091970.4 Solanum lycopersicum HOM05D006147 ORTHO05D007501 2.7e-09 64.7 59 57.6
Sopen09g034870 Solanum pennellii HOM05D006147 ORTHO05D007501 2.7e-09 64.7 59 57.6
PGSC0003DMG402031287 Solanum tuberosum HOM05D006147 ORTHO05D007501 2.7e-09 64.7 59 57.6
TPR.G28159 Trifolium pratense HOM05D006147 ORTHO05D007501 2.7e-09 64.7 59 59.3
Migut.N01278 Erythranthe guttata HOM05D006147 ORTHO05D007501 3.6e-09 64.3 59 55.9
Gohir.D02G220700 Gossypium hirsutum HOM05D006147 ORTHO05D007501 3.6e-09 64.3 61 59.0
SalBow3G3875 Salvia bowleyana HOM05D006147 ORTHO05D007501 3.6e-09 64.3 59 57.6
Hund00185 Selenicereus undatus HOM05D006147 ORTHO05D007501 3.6e-09 64.3 58 56.9
Ciclev10028728m.g Citrus clementina HOM05D006147 ORTHO05D007501 4.7e-09 63.9 59 61.0
Lj3g0027328 Lotus japonicus HOM05D006147 ORTHO05D007501 4.7e-09 63.9 59 57.6
SGA_v2.0_scaffold80G25875 Striga asiatica HOM05D006147 ORTHO05D007501 4.7e-09 63.9 57 56.1
Actinidia02248 Actinidia chinensis HOM05D006147 ORTHO05D007501 6.1e-09 63.5 58 55.2
Aqoxy6G02357 Aquilegia oxysepala HOM05D006147 ORTHO05D007501 6.1e-09 63.5 57 56.1
Medtr4g072040 Medicago truncatula HOM05D006147 ORTHO05D007501 6.1e-09 63.5 59 57.6
CAN.G1635.6 Capsicum annuum HOM05D006147 ORTHO05D007501 7.9e-09 63.2 59 57.6
AUR62040654 Chenopodium quinoa HOM05D006147 ORTHO05D007501 7.9e-09 63.2 58 55.2
Prupe.8G083600 Prunus persica HOM05D006147 ORTHO05D007501 7.9e-09 63.2 58 56.9
Hund00177 Selenicereus undatus HOM05D006147 ORTHO05D007501 7.9e-09 63.2 58 56.9
THA.LOC104804110 Tarenaya hassleriana HOM05D006147 ORTHO05D007501 7.9e-09 63.2 57 57.9
Atru.chr5.3146 Acer truncatum HOM05D006147 ORTHO05D007501 1.0e-08 62.8 59 59.3
CSS0016386 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 1.0e-08 62.8 58 55.2
CSS0033675 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 1.0e-08 62.8 58 55.2
CDE02G0092 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 1.0e-08 62.8 58 53.4
Thecc.02G074800 Theobroma cacao HOM05D006147 ORTHO05D007501 1.0e-08 62.8 58 58.6
COL.COLO4_26048 Corchorus olitorius HOM05D006147 ORTHO05D007501 1.4e-08 62.4 57 59.6
HPP92_002502 Vanilla planifolia HOM05D006147 ORTHO05D007501 1.4e-08 62.4 57 57.9
Ca_20936_v3 Cicer arietinum L. HOM05D006147 ORTHO05D007501 1.8e-08 62.0 59 57.6
Eucgr.G01732 Eucalyptus grandis HOM05D006147 ORTHO05D007501 1.8e-08 62.0 57 56.1
Lalb_Chr03g0025341 Lupinus albus HOM05D006147 ORTHO05D007501 1.8e-08 62.0 59 57.6
MD10G1062800 Malus domestica HOM05D006147 ORTHO05D007501 1.8e-08 62.0 58 56.9
Peaxi162Scf00684g00123 Petunia axillaris HOM05D006147 ORTHO05D007501 1.8e-08 62.0 59 55.9
unitig_899.g15602 Utricularia gibba HOM05D006147 ORTHO05D007501 1.8e-08 62.0 58 53.4
Glyma.12G036900 Glycine max HOM05D006147 ORTHO05D007501 2.3e-08 61.6 59 55.9
Manes.04G083100 Manihot esculenta HOM05D006147 ORTHO05D007501 2.3e-08 61.6 57 56.1
Phvul.011G038600 Phaseolus vulgaris HOM05D006147 ORTHO05D007501 2.3e-08 61.6 59 57.6
Psat7g138880 Pisum sativum HOM05D006147 ORTHO05D007501 2.3e-08 61.6 59 55.9
RcHm_v2.0_Chr6g0267981 Rosa chinensis HOM05D006147 ORTHO05D007501 2.3e-08 61.6 59 54.2
Aa31LG7G15210 Aethionema arabicum HOM05D006147 ORTHO05D007501 3.0e-08 61.2 59 55.9
arahy.Tifrunner.gnm1.ann1.JUX7JJ Arachis hypogaea HOM05D006147 ORTHO05D007501 3.0e-08 61.2 59 57.6
arahy.Tifrunner.gnm1.ann1.S6V2XE Arachis hypogaea HOM05D006147 ORTHO05D007501 3.0e-08 61.2 59 57.6
FAN15G0109 Fragaria x ananassa HOM05D006147 ORTHO05D007501 3.9e-08 60.8 59 54.2
FAN27G3378 Fragaria x ananassa HOM05D006147 ORTHO05D007501 3.9e-08 60.8 59 54.2
MD05G1055500 Malus domestica HOM05D006147 ORTHO05D007501 3.9e-08 60.8 58 55.2
GSVIVG01024169001 Vitis vinifera HOM05D006147 ORTHO05D007501 3.9e-08 60.8 57 54.4
Glyma.11G110000 Glycine max HOM05D006147 ORTHO05D007501 8.8e-08 59.7 59 54.2
Pp3c7_11090 Physcomitrium patens HOM05D006147 ORTHO05D007501 8.8e-08 59.7 58 55.2
Pp3c7_11100 Physcomitrium patens HOM05D006147 ORTHO05D007501 8.8e-08 59.7 58 55.2
BcaC02g08802 Brassica carinata HOM05D006147 ORTHO05D007501 1.1e-07 59.3 59 52.5
A04p16060 Brassica napus HOM05D006147 ORTHO05D007501 1.1e-07 59.3 59 52.5
C04p50520 Brassica napus HOM05D006147 ORTHO05D007501 1.1e-07 59.3 59 52.5
BolC4t26650H Brassica oleracea HOM05D006147 ORTHO05D007501 1.1e-07 59.3 59 52.5
VMungo1127G0575 Vigna mungo HOM05D006147 ORTHO05D007501 1.1e-07 59.3 59 54.2
Cc02_g16880 Coffea canephora HOM05D006147 ORTHO05D007501 1.5e-07 58.9 59 52.5
Thhalv10000221m.g Eutrema salsugineum HOM05D006147 ORTHO05D007501 1.5e-07 58.9 59 52.5
Mapoly0021s0030 Marchantia polymorpha HOM05D006147 ORTHO05D007501 1.5e-07 58.9 59 54.2
Os02g0834700 Oryza sativa ssp. japonica HOM05D006147 ORTHO05D007501 1.5e-07 58.9 56 51.8
ATR0149G025 Amborella trichopoda HOM05D006147 ORTHO05D007501 3.3e-07 57.8 58 51.7
AL4G10420 Arabidopsis lyrata HOM05D006147 ORTHO05D007501 5.7e-07 57.0 59 50.8
AT2G21280 Arabidopsis thaliana HOM05D006147 ORTHO05D007501 5.7e-07 57.0 59 50.8
Carub.0004s0032 Capsella rubella HOM05D006147 ORTHO05D007501 5.7e-07 57.0 59 50.8
CARHR112150 Cardamine hirsuta HOM05D006147 ORTHO05D007501 5.7e-07 57.0 59 50.8
Sp4g00470 Schrenkiella parvula HOM05D006147 ORTHO05D007501 5.7e-07 57.0 59 50.8
SMO146G0042 Selaginella moellendorffii HOM05D006147 ORTHO05D007501 7.4e-07 56.6 58 51.7
MELO3C002785.2 Cucumis melo HOM05D006147 ORTHO05D007501 2.2e-06 55.1 30 80.0
SEGI_33639 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 3.7e-06 54.3 58 51.7


User provided reference genes

Program Settings