Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C013337.2 Cucumis melo HOM05D007350 ORTHO05D009323 2.5e-47 191.8 101 100.0
CsaV3_7G001160 Cucumis sativus L. HOM05D007350 ORTHO05D009323 1.1e-42 176.4 99 94.9
ClCG02G003950 Citrullus lanatus HOM05D007350 ORTHO05D009323 3.3e-39 164.9 101 90.1
Sed0025246 Sechium edule HOM05D007350 ORTHO05D009323 3.7e-38 161.4 102 87.3
Prupe.8G169100 Prunus persica HOM05D007350 ORTHO05D009323 2.2e-30 135.6 94 75.5
Thecc.02G055300 Theobroma cacao HOM05D007350 ORTHO05D009323 2.4e-29 132.1 92 76.1
Gohir.A03G205900 Gossypium hirsutum HOM05D007350 ORTHO05D009323 2.0e-28 129.0 91 75.8
Gohir.D02G227300 Gossypium hirsutum HOM05D007350 ORTHO05D009323 2.0e-28 129.0 91 75.8
Gorai.005G255200 Gossypium raimondii HOM05D007350 ORTHO05D009323 2.0e-28 129.0 91 75.8
Duzib052G1005 Durio zibethinus HOM05D007350 ORTHO05D009323 2.6e-28 128.6 91 78.0
RcHm_v2.0_Chr6g0278921 Rosa chinensis HOM05D007350 ORTHO05D009323 2.6e-28 128.6 99 72.7
TWI79G1045 Tripterygium wilfordii HOM05D007350 ORTHO05D009323 2.6e-28 128.6 99 72.7
Ciclev10029452m.g Citrus clementina HOM05D007350 ORTHO05D009323 3.4e-28 128.3 91 72.5
MD10G1127900 Malus domestica HOM05D007350 ORTHO05D009323 1.3e-27 126.3 94 71.3
FAN24G2045 Fragaria x ananassa HOM05D007350 ORTHO05D009323 2.2e-27 125.6 99 71.7
FAN27G1653 Fragaria x ananassa HOM05D007350 ORTHO05D009323 2.2e-27 125.6 99 71.7
FvH4_2g15660 Fragaria vesca HOM05D007350 ORTHO05D009323 3.8e-27 124.8 99 71.7
Aqoxy3G04007 Aquilegia oxysepala HOM05D007350 ORTHO05D009323 5.0e-27 124.4 96 68.8
Haze_02104 Corylus avellana HOM05D007350 ORTHO05D009323 5.0e-27 124.4 101 67.3
RcHm_v2.0_Chr6g0278901 Rosa chinensis HOM05D007350 ORTHO05D009323 5.0e-27 124.4 98 71.4
Nn4g24553 Nelumbo nucifera HOM05D007350 ORTHO05D009323 6.5e-27 124.0 95 68.4
MBI19_g01918_MAGBIO Magnolia biondii HOM05D007350 ORTHO05D009323 1.1e-26 123.2 97 71.1
Hma1.2p1_0032F.1_g019200 Hydrangea macrophylla HOM05D007350 ORTHO05D009323 1.4e-26 122.9 91 71.4
Manes.04G071000 Manihot esculenta HOM05D007350 ORTHO05D009323 1.4e-26 122.9 95 67.4
Cc09_g10330 Coffea canephora HOM05D007350 ORTHO05D009323 1.9e-26 122.5 93 68.8
FAN15G0854 Fragaria x ananassa HOM05D007350 ORTHO05D009323 2.5e-26 122.1 99 70.7
Oeu025102.1 Olea europaea HOM05D007350 ORTHO05D009323 2.5e-26 122.1 91 72.5
Lalb_Chr02g0159761 Lupinus albus HOM05D007350 ORTHO05D009323 4.2e-26 121.3 95 70.5
GSVIVG01023973001 Vitis vinifera HOM05D007350 ORTHO05D009323 4.2e-26 121.3 94 69.1
Sc08g0002720 Simmondsia chinensis HOM05D007350 ORTHO05D009323 7.2e-26 120.6 93 69.9
PSO063G0872 Papaver somniferum HOM05D007350 ORTHO05D009323 9.4e-26 120.2 95 66.3
PSO782G4816 Papaver somniferum HOM05D007350 ORTHO05D009323 9.4e-26 120.2 95 66.3
COL.COLO4_17379 Corchorus olitorius HOM05D007350 ORTHO05D009323 1.2e-25 119.8 98 66.3
Migut.B01238 Erythranthe guttata HOM05D007350 ORTHO05D009323 1.6e-25 119.4 95 68.4
arahy.Tifrunner.gnm1.ann1.7M0RFB Arachis hypogaea HOM05D007350 ORTHO05D009323 3.6e-25 118.2 81 77.8
MSTRG.20506 Avicennia marina HOM05D007350 ORTHO05D009323 3.6e-25 118.2 96 70.8
Sabra04G0119700 Salix brachista HOM05D007350 ORTHO05D009323 4.6e-25 117.9 92 68.5
Potri.004G177800 Populus trichocarpa HOM05D007350 ORTHO05D009323 1.0e-24 116.7 92 68.5
Glyma.13G070400 Glycine max HOM05D007350 ORTHO05D009323 1.4e-24 116.3 92 64.1
TAR374G1157 Trochodendron aralioides HOM05D007350 ORTHO05D009323 1.4e-24 116.3 85 69.4
Actinidia18040 Actinidia chinensis HOM05D007350 ORTHO05D009323 1.8e-24 115.9 93 64.5
CiPaw.05G085400 Carya illinoinensis HOM05D007350 ORTHO05D009323 1.8e-24 115.9 93 68.8
Ca_04216_v3 Cicer arietinum L. HOM05D007350 ORTHO05D009323 1.8e-24 115.9 100 62.0
Medtr6g007793 Medicago truncatula HOM05D007350 ORTHO05D009323 2.3e-24 115.5 99 61.6
Psat1g060320 Pisum sativum HOM05D007350 ORTHO05D009323 3.0e-24 115.2 95 63.2
Glyma.19G012500 Glycine max HOM05D007350 ORTHO05D009323 3.9e-24 114.8 92 63.0
Lj2g0024385 Lotus japonicus HOM05D007350 ORTHO05D009323 3.9e-24 114.8 81 71.6
QL11p052353 Quercus lobata HOM05D007350 ORTHO05D009323 3.9e-24 114.8 77 76.6
VMungo0464G1538 Vigna mungo HOM05D007350 ORTHO05D009323 3.9e-24 114.8 96 64.6
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 5.1e-24 114.4 99 61.6
Thhalv10026464m.g Eutrema salsugineum HOM05D007350 ORTHO05D009323 6.7e-24 114.0 97 61.9
TPR.G2262 Trifolium pratense HOM05D007350 ORTHO05D009323 6.7e-24 114.0 81 70.4
CANSAT78G0569 Cannabis sativa HOM05D007350 ORTHO05D009323 8.8e-24 113.6 94 69.1
Cpa.g.sc20.115 Carica papaya HOM05D007350 ORTHO05D009323 8.8e-24 113.6 91 64.8
Actinidia20526 Actinidia chinensis HOM05D007350 ORTHO05D009323 1.1e-23 113.2 93 62.4
CAN.G112.14 Capsicum annuum HOM05D007350 ORTHO05D009323 1.1e-23 113.2 97 66.0
Phvul.004G019500 Phaseolus vulgaris HOM05D007350 ORTHO05D009323 4.3e-23 111.3 80 72.5
Eucgr.G01372 Eucalyptus grandis HOM05D007350 ORTHO05D009323 5.7e-23 110.9 99 64.6
Sp7g37290 Schrenkiella parvula HOM05D007350 ORTHO05D009323 5.7e-23 110.9 97 59.8
THA.LOC104807801 Tarenaya hassleriana HOM05D007350 ORTHO05D009323 7.4e-23 110.5 90 65.6
Nitab4.5_0005221g0020 Nicotiana tabacum HOM05D007350 ORTHO05D009323 1.3e-22 109.8 92 65.2
PGR042G2321 Punica granatum HOM05D007350 ORTHO05D009323 1.3e-22 109.8 96 66.7
ATR0598G093 Amborella trichopoda HOM05D007350 ORTHO05D009323 1.7e-22 109.4 94 62.8
AUR62013001 Chenopodium quinoa HOM05D007350 ORTHO05D009323 8.2e-22 107.1 85 68.2
SGA_v2.0_scaffold124G33608 Striga asiatica HOM05D007350 ORTHO05D009323 1.8e-21 105.9 92 67.4
Nitab4.5_0002598g0070 Nicotiana tabacum HOM05D007350 ORTHO05D009323 2.4e-21 105.5 92 65.2
Rhsim03G0180300 Rhododendron simsii HOM05D007350 ORTHO05D009323 2.4e-21 105.5 85 68.2
Hund16245 Selenicereus undatus HOM05D007350 ORTHO05D009323 4.1e-21 104.8 96 59.4
AUR62010011 Chenopodium quinoa HOM05D007350 ORTHO05D009323 1.2e-20 103.2 85 65.9
BcaC01g00233 Brassica carinata HOM05D007350 ORTHO05D009323 2.0e-20 102.4 98 57.1
CARHR294210 Cardamine hirsuta HOM05D007350 ORTHO05D009323 1.0e-19 100.1 98 57.1
AT4G38490 Arabidopsis thaliana HOM05D007350 ORTHO05D009323 1.3e-19 99.8 76 67.1
Carub.0007s0037 Capsella rubella HOM05D007350 ORTHO05D009323 1.3e-19 99.8 85 62.4
AL7G10350 Arabidopsis lyrata HOM05D007350 ORTHO05D009323 1.7e-19 99.4 83 63.9
Atru.chr5.3441 Acer truncatum HOM05D007350 ORTHO05D009323 2.9e-19 98.6 75 70.7
Solyc05g050720.4 Solanum lycopersicum HOM05D007350 ORTHO05D009323 3.8e-19 98.2 92 62.0
Sopen05g029130 Solanum pennellii HOM05D007350 ORTHO05D009323 3.8e-19 98.2 92 62.0
BolC3t19964H Brassica oleracea HOM05D007350 ORTHO05D009323 5.0e-19 97.8 87 62.1
A08p24200 Brassica napus HOM05D007350 ORTHO05D009323 8.5e-19 97.1 87 62.1
CDE05G3477 Ceratophyllum demersum HOM05D007350 ORTHO05D009323 8.5e-19 97.1 83 65.1
C03p77120 Brassica napus HOM05D007350 ORTHO05D009323 1.4e-18 96.3 87 60.9
Hma1.2p1_0032F.1_g019210 Hydrangea macrophylla HOM05D007350 ORTHO05D009323 1.4e-18 96.3 65 83.1
BraA08t34374Z Brassica rapa HOM05D007350 ORTHO05D009323 3.6e-17 91.7 87 59.8
unitig_749.g14334 Utricularia gibba HOM05D000730 ORTHO05D000578 6.1e-17 90.9 86 60.5
BcaC01g00225 Brassica carinata HOM05D007350 ORTHO05D009323 7.9e-17 90.5 87 58.6
Lsat_1_v5_gn_4_72021 Lactuca sativa HOM05D007350 ORTHO05D009323 7.9e-17 90.5 78 65.4
Os09g0450200 Oryza sativa ssp. japonica HOM05D007350 ORTHO05D009323 1.0e-16 90.1 70 61.4
Dinv09314 Davidia involucrata HOM05D007350 ORTHO05D009323 3.0e-16 88.6 60 63.3
HanXRQChr10g0298081 Helianthus annuus HOM05D007350 ORTHO05D009323 5.1e-16 87.8 92 55.4
CDE11G0403 Ceratophyllum demersum HOM05D007350 ORTHO05D009323 8.8e-16 87.0 67 71.6
ECA234G1892 Erigeron canadensis HOM05D007350 ORTHO05D009323 8.8e-16 87.0 83 59.0
RcHm_v2.0_Chr6g0278961 Rosa chinensis HOM05D007350 ORTHO05D009323 3.3e-15 85.1 64 65.6
Atru.chr6.83 Acer truncatum HOM05D007350 ORTHO05D009323 5.7e-15 84.3 84 58.3
MD10G1128000 Malus domestica HOM05D007350 ORTHO05D009323 1.1e-13 80.1 64 71.9
CSS0005535 Camellia sinensis var. sinensis HOM05D007350 ORTHO05D009323 4.1e-13 78.2 56 60.7
SalBow5G3345 Salvia bowleyana HOM05D007350 ORTHO05D009323 3.5e-12 75.1 63 55.6
HPP92_012658 Vanilla planifolia HOM05D007350 ORTHO05D009323 2.1e-09 65.9 59 55.9
Pp3c6_16710 Physcomitrium patens HOM05D007350 ORTHO05D009323 1.0e-08 63.5 88 42.0
Mapoly0060s0112 Marchantia polymorpha HOM05D007350 ORTHO05D009323 8.8e-08 60.5 95 38.9
PGSC0003DMG400006999 Solanum tuberosum HOM05D007350 ORTHO05D009323 1.1e-07 60.1 54 55.6
DCAR_004401 Daucus carota HOM05D000250 ORTHO05D000625 2.6e-07 58.9 56 51.8
SEGI_00987 Sequoiadendron giganteum HOM05D007350 ORTHO05D009323 5.7e-07 57.8 80 41.2


User provided reference genes

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