Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C013256.2 Cucumis melo HOM05D007101 ORTHO05D008632 2.1e-251 872.8 874 100.0
CsaV3_7G001820 Cucumis sativus L. HOM05D007101 ORTHO05D008632 5.8e-233 811.6 874 96.2
ClCG02G003480 Citrullus lanatus HOM05D007101 ORTHO05D008632 7.7e-201 704.9 875 90.2
Sed0027220 Sechium edule HOM05D007101 ORTHO05D008632 3.8e-176 622.9 876 79.7
COL.COLO4_17930 Corchorus olitorius HOM05D007101 ORTHO05D008632 2.8e-110 404.1 907 69.3
CiPaw.06G116300 Carya illinoinensis HOM05D007101 ORTHO05D008632 1.4e-106 391.7 869 74.1
Duzib132G1059 Durio zibethinus HOM05D007101 ORTHO05D008632 6.7e-104 382.9 870 72.2
CSS0049741 Camellia sinensis var. sinensis HOM05D007101 ORTHO05D008632 2.5e-98 364.4 876 71.2
GSVIVG01023885001 Vitis vinifera HOM05D007101 ORTHO05D008632 3.2e-98 364.0 876 71.7
Sc14g0002450 Simmondsia chinensis HOM05D007101 ORTHO05D008632 3.6e-97 360.5 881 71.6
Cpa.g.sc20.207 Carica papaya HOM05D007101 ORTHO05D008632 1.4e-93 348.6 911 66.6
RcHm_v2.0_Chr6g0280761 Rosa chinensis HOM05D007101 ORTHO05D008632 5.3e-93 346.7 867 66.7
Prupe.8G178500 Prunus persica HOM05D007101 ORTHO05D008632 4.5e-92 343.6 868 72.5
QL11p055950 Quercus lobata HOM05D007101 ORTHO05D008632 1.0e-91 342.4 874 72.2
Potri.004G205600 Populus trichocarpa HOM05D007101 ORTHO05D008632 1.1e-87 328.9 875 71.0
FAN15G1235 Fragaria x ananassa HOM05D007101 ORTHO05D008632 3.3e-87 327.4 861 71.4
Dinv41876 Davidia involucrata HOM05D007101 ORTHO05D008632 7.4e-87 326.2 880 59.9
Sabra04G0138800 Salix brachista HOM05D007101 ORTHO05D008632 7.4e-87 326.2 879 70.3
THA.LOC104819686 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 2.2e-86 324.7 882 69.7
TWI15G0633 Tripterygium wilfordii HOM05D007101 ORTHO05D008632 2.8e-86 324.3 901 65.5
Cfa005353 Carpinus fangiana HOM05D007101 ORTHO05D008632 2.4e-85 321.2 874 64.5
TAR376G1071 Trochodendron aralioides HOM05D007101 ORTHO05D008632 7.0e-85 319.7 869 67.7
FvH4_2g16640 Fragaria vesca HOM05D007101 ORTHO05D008632 9.1e-85 319.3 861 71.3
MD10G1139700 Malus domestica HOM05D007101 ORTHO05D008632 9.1e-85 319.3 867 70.8
Haze_02013 Corylus avellana HOM05D007101 ORTHO05D008632 1.7e-83 315.1 873 70.3
Actinidia17999 Actinidia chinensis HOM05D007101 ORTHO05D008632 3.8e-83 313.9 878 67.7
Aqoxy6G01656 Aquilegia oxysepala HOM05D007101 ORTHO05D008632 3.2e-82 310.8 877 65.1
Thecc.02G044400 Theobroma cacao HOM05D007101 ORTHO05D008632 5.5e-82 310.1 876 69.7
Lalb_Chr05g0218081 Lupinus albus HOM05D007101 ORTHO05D008632 1.2e-81 308.9 872 61.7
Rhsim01G0003500 Rhododendron simsii HOM05D007101 ORTHO05D008632 2.1e-81 308.1 879 68.7
Lj4g0005302 Lotus japonicus HOM05D007101 ORTHO05D008632 8.0e-81 306.2 881 63.5
Manes.11G110800 Manihot esculenta HOM05D007101 ORTHO05D008632 1.4e-80 305.4 877 69.4
Gohir.D04G170700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 1.5e-79 302.0 871 69.1
Gorai.012G159300 Gossypium raimondii HOM05D007101 ORTHO05D008632 4.4e-79 300.4 871 69.3
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 9.7e-79 299.3 885 56.6
Gohir.A04G125700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 7.0e-77 293.1 871 69.0
SGA_v2.0_scaffold32G13346 Striga asiatica HOM05D007101 ORTHO05D008632 3.8e-75 287.3 876 67.8
Glyma.08G060600 Glycine max HOM05D007101 ORTHO05D008632 3.2e-74 284.3 881 59.7
PGR142G0716 Punica granatum HOM05D007101 ORTHO05D008632 5.5e-74 283.5 877 64.4
Phvul.002G220400 Phaseolus vulgaris HOM05D007101 ORTHO05D008632 1.2e-71 275.8 889 57.4
Eucgr.I01520 Eucalyptus grandis HOM05D007101 ORTHO05D008632 3.4e-71 274.2 861 65.6
Ciclev10027787m.g Citrus clementina HOM05D007101 ORTHO05D008632 2.8e-70 271.2 874 66.2
Ca_18469_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 8.3e-70 269.6 876 60.4
Ca_30070_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 8.3e-70 269.6 876 60.4
Peaxi162Scf00818g00019 Petunia axillaris HOM05D007101 ORTHO05D008632 8.3e-70 269.6 869 68.9
SalBow1G7566 Salvia bowleyana HOM05D007101 ORTHO05D008632 9.1e-69 266.2 869 64.1
Ah.01g023750 Amaranthus hybridus HOM05D000564 ORTHO05D002780 2.0e-68 265.0 856 63.6
arahy.Tifrunner.gnm1.ann1.RGU3X9 Arachis hypogaea HOM05D007101 ORTHO05D008632 3.5e-68 264.2 875 59.5
C07p06350 Brassica napus HOM05D007101 ORTHO05D008632 3.5e-68 264.2 878 66.4
arahy.Tifrunner.gnm1.ann1.RR3D2P Arachis hypogaea HOM05D007101 ORTHO05D008632 5.9e-68 263.5 875 63.3
Aa31LG8G14540 Aethionema arabicum HOM05D007101 ORTHO05D008632 7.7e-68 263.1 880 66.7
EL10Ac9g21242 Beta vulgaris HOM05D007101 ORTHO05D008632 6.6e-67 260.0 865 67.3
AUR62027126 Chenopodium quinoa HOM05D007101 ORTHO05D008632 2.1e-65 255.0 798 71.2
Thhalv10022542m.g Eutrema salsugineum HOM05D007101 ORTHO05D008632 2.1e-65 255.0 876 66.9
Nn1g05331 Nelumbo nucifera HOM05D007101 ORTHO05D008632 8.0e-65 253.1 877 63.7
vmacro02332 Vaccinium macrocarpon HOM05D007101 ORTHO05D008632 1.0e-64 252.7 893 63.9
BcaB03g16462 Brassica carinata HOM05D007101 ORTHO05D008632 2.3e-64 251.5 875 66.1
AL3G49990 Arabidopsis lyrata HOM05D007101 ORTHO05D008632 5.2e-64 250.4 874 66.2
Migut.B00010 Erythranthe guttata HOM05D007101 ORTHO05D008632 2.0e-63 248.4 877 67.0
BcaC06g36224 Brassica carinata HOM05D007101 ORTHO05D008632 6.3e-62 243.4 878 65.8
Cc03_g11620 Coffea canephora HOM05D007101 ORTHO05D008632 1.8e-61 241.9 441 59.0
A07p03990 Brassica napus HOM05D007101 ORTHO05D008632 2.4e-61 241.5 878 65.5
BraA07t28190Z Brassica rapa HOM05D007101 ORTHO05D008632 2.4e-61 241.5 878 65.4
Hund06163 Selenicereus undatus HOM05D007101 ORTHO05D008632 7.0e-61 240.0 876 65.2
Nitab4.5_0000526g0060 Nicotiana tabacum HOM05D007101 ORTHO05D008632 3.5e-60 237.7 840 69.0
Nitab4.5_0006710g0010 Nicotiana tabacum HOM05D007101 ORTHO05D008632 3.5e-60 237.7 840 69.0
TPR.G15380 Trifolium pratense HOM05D007101 ORTHO05D008632 3.5e-60 237.7 864 59.1
AUR62012916 Chenopodium quinoa HOM05D007101 ORTHO05D008632 5.9e-60 236.9 813 67.5
CARHR293460 Cardamine hirsuta HOM05D007101 ORTHO05D008632 7.8e-60 236.5 874 65.8
BolC7t41051H Brassica oleracea HOM05D007101 ORTHO05D008632 1.5e-58 232.3 868 66.1
DCAR_015659 Daucus carota HOM05D000046 ORTHO05D008632 2.5e-58 231.5 873 65.8
Atru.chr5.3546 Acer truncatum HOM05D007101 ORTHO05D008632 6.1e-57 226.9 785 69.7
MSTRG.17820 Avicennia marina HOM05D007101 ORTHO05D008632 1.8e-56 225.3 383 65.8
Oeu059796.1 Olea europaea HOM05D007101 ORTHO05D008632 6.8e-56 223.4 881 66.7
CAN.G157.9 Capsicum annuum HOM05D007101 ORTHO05D008632 7.5e-55 219.9 865 66.6
arahy.Tifrunner.gnm1.ann1.X169V3 Arachis hypogaea HOM05D007101 ORTHO05D008632 9.8e-55 219.5 361 68.4
TAR629G2938 Trochodendron aralioides HOM05D007101 ORTHO05D008632 3.7e-54 217.6 202 56.9
AT2G17140 Arabidopsis thaliana HOM05D007101 ORTHO05D008632 4.1e-53 214.2 874 64.4
Lj9A406T59 Lonicera japonica HOM05D007101 ORTHO05D008632 9.2e-53 213.0 878 65.4
SHI10554 Sapria himalayana HOM05D007101 ORTHO05D008632 2.0e-52 211.8 827 63.1
PGSC0003DMG400019836 Solanum tuberosum HOM05D007101 ORTHO05D008632 1.0e-51 209.5 366 66.9
HanXRQChr12g0374451 Helianthus annuus HOM05D007101 ORTHO05D008632 2.1e-49 201.8 869 62.3
Solyc02g021020.4 Solanum lycopersicum HOM05D007101 ORTHO05D008632 5.2e-48 197.2 368 65.8
Sopen02g005320 Solanum pennellii HOM05D007101 ORTHO05D008632 2.6e-47 194.9 366 65.8
ECA233G4336 Erigeron canadensis HOM05D000046 ORTHO05D014757 3.2e-45 188.0 378 62.2
MBI06_g35039_MAGBIO Magnolia biondii HOM05D007101 ORTHO05D008632 1.7e-43 182.2 890 48.2
FAN24G2347 Fragaria x ananassa HOM05D007101 ORTHO05D008632 1.9e-42 178.7 861 65.2
Carub.0003s3107 Capsella rubella HOM05D007101 ORTHO05D008632 5.6e-42 177.2 885 61.8
Os02g0132100 Oryza sativa ssp. japonica HOM05D007101 ORTHO05D008632 6.8e-40 170.2 380 58.9
Rhsim11G0197400 Rhododendron simsii HOM05D007101 ORTHO05D008632 1.7e-38 165.6 845 53.8
Lsat_1_v5_gn_8_121281 Lactuca sativa HOM05D007101 ORTHO05D008632 7.1e-37 160.2 178 46.6
CDE04G2490 Ceratophyllum demersum HOM05D007101 ORTHO05D008632 6.0e-36 157.1 175 46.3
HPP92_025842 Vanilla planifolia HOM05D007101 ORTHO05D008632 6.0e-36 157.1 393 55.7
PSO675G0367 Papaver somniferum HOM05D007101 ORTHO05D008632 2.3e-35 155.2 380 58.9
Zm00001eb209030 Zea mays HOM05D007101 ORTHO05D008632 3.0e-35 154.8 362 60.2
Medtr4g091600 Medicago truncatula HOM05D007101 ORTHO05D008632 1.9e-34 152.1 868 54.5
Glyma.07G188700 Glycine max HOM05D007101 ORTHO05D008632 8.1e-33 146.7 875 34.6
TAR629G1847 Trochodendron aralioides HOM05D007101 ORTHO05D008632 5.2e-32 144.1 184 45.7
MD05G1134600 Malus domestica HOM05D007101 ORTHO05D008632 2.4e-29 135.2 315 67.0
Sp3g30480 Schrenkiella parvula HOM05D007101 ORTHO05D008632 2.4e-29 135.2 745 69.3
unitig_32.g11014 Utricularia gibba HOM05D007101 ORTHO05D008632 6.0e-28 130.6 190 41.1
ATR0618G240 Amborella trichopoda HOM05D007101 ORTHO05D008632 1.1e-24 119.8 396 52.5
MD05G1134700 Malus domestica HOM05D007101 ORTHO05D008632 2.2e-22 112.1 106 53.8
Gorai.008G096400 Gossypium raimondii HOM05D007101 ORTHO05D008632 7.8e-20 103.6 155 40.6
VMungo0251G1721 Vigna mungo HOM05D007101 ORTHO05D008632 2.4e-13 82.0 101 48.5
THA.LOC104807397 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 1.0e-11 76.6 112 44.6
Gohir.D06G112750 Gossypium hirsutum HOM05D007101 ORTHO05D019476 3.4e-07 61.6 61 49.2
FAN02G2736 Fragaria x ananassa HOM05D006888 ORTHO05D008371 1.7e-06 59.3 105 34.3
SGA_v2.0_scaffold60G20860 Striga asiatica HOM05D000104 ORTHO05D009920 2.2e-06 58.9 95 36.8
Migut.F00552 Erythranthe guttata HOM05D000104 ORTHO05D009920 3.8e-06 58.2 97 33.0
FvH4_6g07430 Fragaria vesca HOM05D006888 ORTHO05D008371 6.4e-06 57.4 54 44.4
FAN09G2872 Fragaria x ananassa HOM05D006888 ORTHO05D008371 6.4e-06 57.4 54 44.4
FAN14G0975 Fragaria x ananassa HOM05D006888 ORTHO05D008371 6.4e-06 57.4 54 44.4
Gorai.005G043000 Gossypium raimondii HOM05D063522 ORTHO05D019476 6.4e-06 57.4 36 72.2


User provided reference genes

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