Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 0.0e+00 1165.6 605 100.0
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 4.1e-312 1073.9 608 93.8
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 3.6e-282 974.5 615 85.5
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 6.4e-271 937.2 612 82.5
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 4.4e-203 711.8 617 62.7
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 7.0e-201 704.5 618 61.8
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 1.3e-199 700.3 593 63.9
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 5.0e-199 698.4 610 63.3
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 5.0e-199 698.4 629 62.8
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 5.5e-198 694.9 601 62.7
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 2.1e-197 693.0 590 63.9
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 2.7e-197 692.6 617 61.4
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 4.7e-197 691.8 579 63.9
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 4.7e-197 691.8 602 61.3
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 8.0e-197 691.0 602 63.5
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 8.0e-197 691.0 621 61.2
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 2.3e-196 689.5 626 61.0
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 8.8e-196 687.6 610 63.0
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 1.2e-195 687.2 610 62.8
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 2.0e-195 686.4 612 61.9
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 2.4e-193 679.5 603 60.9
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 3.1e-193 679.1 605 60.5
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.2e-192 677.2 632 61.1
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 2.7e-192 676.0 626 59.1
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 3.5e-192 675.6 614 60.4
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 7.7e-192 674.5 613 60.8
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 1.3e-191 673.7 615 61.0
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 1.7e-191 673.3 652 58.7
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 1.7e-191 673.3 600 60.7
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 3.8e-191 672.2 615 61.1
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 8.5e-191 671.0 589 63.0
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 4.2e-190 668.7 591 60.4
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 4.2e-190 668.7 610 61.1
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 1.0e-188 664.1 618 59.2
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 1.0e-188 664.1 600 61.5
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 4.0e-188 662.1 657 57.1
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 8.8e-188 661.0 622 59.0
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 1.2e-187 660.6 587 61.8
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 7.5e-187 657.9 598 60.7
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 2.8e-186 656.0 603 59.5
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.8e-185 653.3 623 58.3
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 2.4e-185 652.9 616 58.6
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 4.1e-185 652.1 585 59.7
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 1.2e-184 650.6 584 61.1
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 2.0e-184 649.8 606 59.6
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 1.3e-183 647.1 593 58.2
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 8.5e-183 644.4 590 58.6
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 1.1e-182 644.0 588 60.4
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 5.5e-182 641.7 611 57.3
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 1.2e-181 640.6 592 59.5
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 2.1e-181 639.8 626 57.0
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 2.1e-181 639.8 608 57.4
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 2.8e-181 639.4 609 59.6
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 1.0e-180 637.5 617 56.1
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 2.3e-180 636.3 594 58.6
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 9.8e-179 630.9 584 59.4
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 7.0e-177 624.8 609 58.0
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 4.5e-176 622.1 665 55.2
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 6.6e-175 618.2 578 58.5
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 1.9e-174 616.7 608 56.7
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 4.3e-174 615.5 613 55.6
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 9.5e-174 614.4 584 56.5
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 1.2e-173 614.0 591 56.3
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 2.8e-173 612.8 609 55.8
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 1.8e-172 610.1 625 56.2
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 3.0e-172 609.4 610 55.9
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 4.0e-172 609.0 626 55.0
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 5.2e-172 608.6 578 58.3
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 4.4e-171 605.5 602 56.5
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 5.7e-171 605.1 594 56.4
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 2.9e-170 602.8 569 58.2
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 1.1e-169 600.9 589 55.3
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 1.4e-169 600.5 588 56.6
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 7.0e-169 598.2 627 55.0
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 7.0e-169 598.2 587 55.7
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 7.0e-169 598.2 588 55.6
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 1.6e-168 597.0 609 53.5
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 1.5e-166 590.5 613 55.6
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 1.5e-166 590.5 616 55.2
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 2.5e-166 589.7 580 54.8
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 2.8e-165 586.3 593 54.0
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 2.8e-165 586.3 601 53.6
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 2.8e-165 586.3 601 53.6
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 8.0e-165 584.7 578 55.9
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 1.2e-163 580.9 587 53.7
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 2.6e-163 579.7 592 56.4
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 3.4e-163 579.3 594 53.5
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 3.4e-163 579.3 621 54.8
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 5.8e-163 578.6 579 55.8
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 3.7e-162 575.9 577 54.2
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 4.9e-162 575.5 577 54.1
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 4.9e-162 575.5 588 53.6
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 8.3e-162 574.7 588 53.1
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 4.1e-161 572.4 606 54.1
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 5.6e-158 562.0 609 53.0
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 2.6e-155 553.1 597 53.9
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 3.2e-153 546.2 614 52.3
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 5.4e-153 545.4 612 49.3
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 9.2e-153 544.7 496 61.1
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 4.6e-152 542.3 589 51.4
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.5e-150 537.3 629 53.4
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 1.6e-149 533.9 620 49.0
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 3.3e-142 509.6 495 56.8
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 2.0e-139 500.4 578 49.8
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 5.8e-139 498.8 552 51.4
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 1.7e-138 497.3 594 50.8
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 4.5e-131 472.6 577 47.7
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 1.1e-124 451.4 465 55.5
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 1.5e-123 447.6 584 45.2
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 2.3e-119 433.7 470 55.5
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 4.3e-118 429.5 587 45.8
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 2.5e-113 413.7 589 43.5
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 4.2e-113 412.9 616 42.0
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 6.3e-93 345.9 263 67.7
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 1.5e-91 341.3 382 53.7
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 6.5e-90 335.9 538 41.4
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 4.7e-88 329.7 436 46.3
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 3.7e-85 320.1 364 50.8
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 3.2e-73 280.4 364 45.3
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 3.2e-73 280.4 338 50.0
ECA246G3488 Erigeron canadensis HOM05D004142 ORTHO05D005411 3.5e-67 260.4 341 48.1
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 2.9e-66 257.3 310 49.7
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 9.2e-60 235.7 313 42.2
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 5.9e-59 233.0 286 45.5
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 6.1e-56 223.0 210 58.1
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 2.3e-55 221.1 196 59.7
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 2.9e-53 214.2 239 51.5
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 1.6e-51 208.4 197 55.3
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 8.6e-50 202.6 119 84.9
HPP92_025663 Vanilla planifolia HOM05D004142 ORTHO05D005411 2.4e-44 184.5 200 49.5
GSVIVG01004442001 Vitis vinifera HOM05D004142 ORTHO05D005411 5.4e-44 183.3 149 65.1
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 7.8e-43 179.5 226 43.4
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 1.5e-41 175.3 195 46.2
Hma1.2p1_0796F.1_g219330 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 4.3e-41 173.7 112 69.6
TAR318G0001 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.2e-38 165.6 148 59.5
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 1.5e-38 165.2 131 66.4
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 3.4e-38 164.1 481 28.1
SEGI_26341 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 3.0e-34 151.0 149 57.7
AagrBONN_evm.TU.Sc2ySwM_228.5299 Anthoceros agrestis HOM05D004142 ORTHO05D005411 7.3e-33 146.4 159 50.9
Zm00001eb152690 Zea mays HOM05D004142 ORTHO05D000502 1.4e-31 142.1 98 72.4
SEGI_03267 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 3.4e-30 137.5 115 60.0
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 4.4e-30 137.1 145 59.3
SEGI_12604 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 7.6e-30 136.3 115 59.1
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 8.4e-29 132.9 113 66.4
AagrBONN_evm.TU.Sc2ySwM_228.5300 Anthoceros agrestis HOM05D004142 ORTHO05D005411 1.1e-28 132.5 262 34.7
CSS0025136 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.3e-26 125.6 169 49.7
BcaB07g31739 Brassica carinata HOM05D004142 ORTHO05D005411 3.1e-23 114.4 117 46.2
Zm00001eb177550 Zea mays HOM05D004142 ORTHO05D005411 1.5e-22 112.1 87 67.8
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 3.4e-22 110.9 87 67.8
BcaB07g31742 Brassica carinata HOM05D004142 ORTHO05D005411 7.1e-20 103.2 163 39.9
SEGI_29991 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 4.6e-19 100.5 175 35.4
TPR.G40409 Trifolium pratense HOM05D004142 ORTHO05D005411 2.3e-18 98.2 65 75.4
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 5.1e-18 97.1 74 70.3
Eucgr.H04983 Eucalyptus grandis HOM05D004142 ORTHO05D005411 2.5e-17 94.7 70 67.1
Oeu003432.1 Olea europaea HOM05D004142 ORTHO05D005411 2.1e-16 91.7 112 41.1
MD11G1014300 Malus domestica HOM05D004142 ORTHO05D005411 3.6e-16 90.9 76 67.1
Lsat_1_v5_gn_5_140320 Lactuca sativa HOM05D004142 ORTHO05D036439 4.8e-16 90.5 146 41.1
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 1.4e-15 89.0 69 68.1
BcaC04g22984 Brassica carinata HOM05D004142 ORTHO05D005411 1.5e-14 85.5 73 63.0
Psat3g160080 Pisum sativum HOM05D004142 ORTHO05D005411 7.6e-14 83.2 101 46.5
TPR.G18886 Trifolium pratense HOM05D000005 ORTHO05D000012 5.6e-09 67.0 67 52.2
Zm00001eb028530 Zea mays HOM05D004142 ORTHO05D000502 2.8e-08 64.7 48 68.8
RcHm_v2.0_Chr1g0336401 Rosa chinensis HOM05D004142 ORTHO05D005411 1.4e-07 62.4 49 55.1
SEGI_00997 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 3.1e-07 61.2 120 36.7
RcHm_v2.0_Chr7g0239681 Rosa chinensis HOM05D004142 ORTHO05D005411 1.5e-06 58.9 48 54.2


User provided reference genes

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