Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C013247.2 Cucumis melo HOM05D006640 ORTHO05D008078 7.4e-107 390.6 201 100.0
CsaV3_7G001930 Cucumis sativus L. HOM05D006640 ORTHO05D008078 4.5e-104 381.3 201 96.5
ClCG02G003390 Citrullus lanatus HOM05D006640 ORTHO05D008078 1.9e-99 365.9 201 93.0
CiPaw.07G136100 Carya illinoinensis HOM05D006640 ORTHO05D008078 4.5e-64 248.4 199 65.3
Eucgr.F01788 Eucalyptus grandis HOM05D006640 ORTHO05D008078 1.2e-61 240.4 199 62.8
QL02p015123 Quercus lobata HOM05D006640 ORTHO05D008078 1.2e-61 240.4 199 64.8
MD15G1440200 Malus domestica HOM05D006640 ORTHO05D008078 3.6e-61 238.8 200 67.0
Migut.E01492 Erythranthe guttata HOM05D006640 ORTHO05D008078 5.2e-60 235.0 195 64.6
GSVIVG01013394001 Vitis vinifera HOM05D006640 ORTHO05D008078 6.8e-60 234.6 199 62.3
Cfa010319 Carpinus fangiana HOM05D006640 ORTHO05D008078 5.7e-59 231.5 187 63.6
Ciclev10002549m.g Citrus clementina HOM05D006640 ORTHO05D008078 7.5e-59 231.1 199 61.8
Atru.chr3.582 Acer truncatum HOM05D006640 ORTHO05D008078 9.8e-59 230.7 199 60.8
EL10Ac3g05131 Beta vulgaris HOM05D006640 ORTHO05D008078 9.8e-59 230.7 195 59.5
CAN.G1138.9 Capsicum annuum HOM05D006640 ORTHO05D008078 1.3e-58 230.3 199 60.8
TAR625G0363 Trochodendron aralioides HOM05D006640 ORTHO05D008078 2.2e-58 229.6 199 60.8
Haze_19181 Corylus avellana HOM05D006640 ORTHO05D008078 8.3e-58 227.6 199 60.3
Prupe.5G009200 Prunus persica HOM05D006640 ORTHO05D008078 1.1e-57 227.3 200 63.5
Manes.13G069100 Manihot esculenta HOM05D006640 ORTHO05D008078 1.8e-57 226.5 199 59.3
Cfa020797 Carpinus fangiana HOM05D006640 ORTHO05D008078 2.0e-56 223.0 187 63.1
Peaxi162Scf00680g00119 Petunia axillaris HOM05D006640 ORTHO05D008078 4.5e-56 221.9 199 59.3
FvH4_5g25620 Fragaria vesca HOM05D006640 ORTHO05D008078 5.9e-56 221.5 200 61.0
Thecc.03G029100 Theobroma cacao HOM05D006640 ORTHO05D008078 5.9e-56 221.5 199 59.3
FAN18G3620 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.3e-55 220.3 200 60.5
FAN04G1358 Fragaria x ananassa HOM05D006640 ORTHO05D008078 3.8e-55 218.8 200 60.0
Cc10_g14910 Coffea canephora HOM05D006640 ORTHO05D008078 5.0e-55 218.4 199 58.3
CSS0000785 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 6.6e-55 218.0 199 58.3
RcHm_v2.0_Chr7g0215911 Rosa chinensis HOM05D006640 ORTHO05D008078 8.6e-55 217.6 200 61.0
Lj6g0027905 Lotus japonicus HOM05D006640 ORTHO05D008078 1.1e-54 217.2 199 58.3
Sed0007887 Sechium edule HOM05D006640 ORTHO05D008078 1.1e-54 217.2 148 73.6
Potri.005G253200 Populus trichocarpa HOM05D006640 ORTHO05D008078 1.5e-54 216.9 201 56.7
Hund21079 Selenicereus undatus HOM05D006640 ORTHO05D008078 1.9e-54 216.5 196 59.7
COL.COLO4_22727 Corchorus olitorius HOM05D006640 ORTHO05D008078 2.5e-54 216.1 188 60.1
HanXRQChr05g0147651 Helianthus annuus HOM05D006640 ORTHO05D008078 4.3e-54 215.3 199 56.8
PGR083G0938 Punica granatum HOM05D006640 ORTHO05D008078 5.6e-54 214.9 195 56.9
SalBow1G3286 Salvia bowleyana HOM05D006640 ORTHO05D008078 5.6e-54 214.9 195 56.4
Lalb_Chr01g0007731 Lupinus albus HOM05D006640 ORTHO05D008078 1.2e-53 213.8 199 54.8
MSTRG.990 Avicennia marina HOM05D006640 ORTHO05D008078 2.1e-53 213.0 199 58.8
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 2.1e-53 213.0 199 55.8
Solyc08g069130.1 Solanum lycopersicum HOM05D006640 ORTHO05D008078 2.1e-53 213.0 199 55.8
Sopen04g036190 Solanum pennellii HOM05D006640 ORTHO05D008078 2.1e-53 213.0 199 55.3
vmacro05542 Vaccinium macrocarpon HOM05D006640 ORTHO05D008078 2.1e-53 213.0 190 60.5
Oeu011315.3 Olea europaea HOM05D006640 ORTHO05D008078 3.6e-53 212.2 201 57.2
SalBow7G4342 Salvia bowleyana HOM05D006640 ORTHO05D008078 4.7e-53 211.8 195 55.9
HanXRQChr02g0057271 Helianthus annuus HOM05D006640 ORTHO05D008078 1.4e-52 210.3 199 56.3
FAN08G2005 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.2e-51 207.2 188 60.6
DCAR_013930 Daucus carota HOM05D006640 ORTHO05D008078 2.6e-51 206.1 198 56.6
Duzib205G0266 Durio zibethinus HOM05D006640 ORTHO05D008078 2.6e-51 206.1 190 56.3
Gorai.006G062900 Gossypium raimondii HOM05D006640 ORTHO05D008078 7.5e-51 204.5 205 54.1
CANSAT54G1336 Cannabis sativa HOM05D006640 ORTHO05D008078 1.7e-50 203.4 195 54.9
Medtr4g032370 Medicago truncatula HOM05D006640 ORTHO05D008078 2.9e-50 202.6 195 55.9
Cpa.g.sc26.165 Carica papaya HOM05D006640 ORTHO05D008078 3.7e-50 202.2 201 53.7
ECA232G3411 Erigeron canadensis HOM05D006640 ORTHO05D008078 8.3e-50 201.1 199 54.8
SalBow6G0872 Salvia bowleyana HOM05D006640 ORTHO05D008078 8.3e-50 201.1 192 57.3
ATR0807G089 Amborella trichopoda HOM05D006640 ORTHO05D008078 9.2e-49 197.6 199 48.7
Gohir.A09G046800 Gossypium hirsutum HOM05D006640 ORTHO05D008078 1.2e-48 197.2 205 52.2
TPR.G34155 Trifolium pratense HOM05D006640 ORTHO05D008078 1.2e-48 197.2 200 55.5
CDE02G0900 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 1.6e-48 196.8 196 52.0
Psat7g226480 Pisum sativum HOM05D006640 ORTHO05D008078 2.0e-48 196.4 195 53.3
SGA_v2.0_scaffold184G39969 Striga asiatica HOM05D006640 ORTHO05D008078 2.0e-48 196.4 199 53.8
Aqoxy6G01598 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 3.5e-48 195.7 200 52.5
Ca_19713_v3 Cicer arietinum L. HOM05D006640 ORTHO05D008078 6.0e-48 194.9 238 47.5
Medtr1g103240 Medicago truncatula HOM05D006640 ORTHO05D008078 6.0e-48 194.9 199 53.8
MD08G1245100 Malus domestica HOM05D006640 ORTHO05D008078 1.3e-47 193.7 164 65.2
Dinv27390 Davidia involucrata HOM05D006640 ORTHO05D008078 2.3e-47 193.0 172 61.0
MBI06_g19633_MAGBIO Magnolia biondii HOM05D006640 ORTHO05D008078 2.3e-47 193.0 177 55.4
CSS0036253 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 2.5e-46 189.5 200 54.0
COL.COLO4_07395 Corchorus olitorius HOM05D006640 ORTHO05D008078 4.3e-46 188.7 199 51.3
Os10g0566900 Oryza sativa ssp. japonica HOM05D006640 ORTHO05D008078 4.3e-46 188.7 199 48.7
Rhsim08G0078300 Rhododendron simsii HOM05D006640 ORTHO05D008078 4.3e-46 188.7 187 56.7
AUR62005948 Chenopodium quinoa HOM05D006640 ORTHO05D008078 7.3e-46 188.0 187 52.4
Glyma.08G337400 Glycine max HOM05D001876 ORTHO05D002002 1.2e-45 187.2 199 51.3
THA.LOC104820569 Tarenaya hassleriana HOM05D006640 ORTHO05D008078 1.2e-45 187.2 199 50.8
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 3.6e-45 185.7 187 52.9
FAN13G1910 Fragaria x ananassa HOM05D006640 ORTHO05D008078 6.2e-45 184.9 235 48.5
PSO541G3394 Papaver somniferum HOM05D006640 ORTHO05D008078 6.2e-45 184.9 196 52.6
PSO675G3428 Papaver somniferum HOM05D006640 ORTHO05D008078 8.0e-45 184.5 196 53.1
Aa31LG9G12490 Aethionema arabicum HOM05D006640 ORTHO05D008078 1.4e-44 183.7 199 46.2
Lsat_1_v5_gn_9_28760 Lactuca sativa HOM05D006640 ORTHO05D008078 3.1e-44 182.6 187 52.9
CSS0028139 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 6.8e-44 181.4 199 50.8
unitig_46.g18025 Utricularia gibba HOM05D006640 ORTHO05D008078 2.9e-42 176.0 201 48.3
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 3.7e-42 175.6 163 56.4
Phvul.008G111000 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 4.9e-42 175.3 187 51.9
Hma1.2p1_0612F.1_g188900 Hydrangea macrophylla HOM05D006640 ORTHO05D008078 6.4e-42 174.9 156 60.3
Lsat_1_v5_gn_0_27580 Lactuca sativa HOM05D006640 ORTHO05D008078 2.4e-41 172.9 199 48.2
CARHR179670 Cardamine hirsuta HOM05D006640 ORTHO05D008078 7.0e-41 171.4 199 47.2
Carub.0008s0481 Capsella rubella HOM05D006640 ORTHO05D008078 9.2e-41 171.0 199 46.2
Mapoly0033s0101 Marchantia polymorpha HOM05D006640 ORTHO05D008078 1.6e-40 170.2 195 45.6
Thhalv10003275m.g Eutrema salsugineum HOM05D006640 ORTHO05D008078 2.7e-40 169.5 199 46.7
SHI14582 Sapria himalayana HOM05D006640 ORTHO05D008078 2.7e-40 169.5 158 58.2
AT5G43822 Arabidopsis thaliana HOM05D006640 ORTHO05D008078 6.0e-40 168.3 199 46.2
BcaC06g34624 Brassica carinata HOM05D006640 ORTHO05D008078 1.7e-39 166.8 199 45.7
BraA06t27635Z Brassica rapa HOM05D006640 ORTHO05D008078 5.1e-39 165.2 195 46.2
BcaC06g31675 Brassica carinata HOM05D006640 ORTHO05D008078 6.6e-39 164.9 199 45.2
AL8G16350 Arabidopsis lyrata HOM05D006640 ORTHO05D008078 8.6e-39 164.5 199 44.2
AUR62028117 Chenopodium quinoa HOM05D006640 ORTHO05D008078 2.8e-37 159.5 169 50.9
Nn5g31001 Nelumbo nucifera HOM05D006640 ORTHO05D008078 4.7e-37 158.7 146 58.2
HPP92_007449 Vanilla planifolia HOM05D006640 ORTHO05D008078 2.3e-36 156.4 188 46.3
Zm00001eb327920 Zea mays HOM05D006640 ORTHO05D008078 1.3e-34 150.6 161 47.8
Sp2g08620 Schrenkiella parvula HOM05D006218 ORTHO05D007338 3.2e-33 146.0 196 40.3
Pp3c20_21140 Physcomitrium patens HOM05D000227 ORTHO05D008078 5.4e-33 145.2 187 43.3
Sabra05G0196400 Salix brachista HOM05D006640 ORTHO05D008078 2.1e-32 143.3 189 46.0
Aqoxy2G03352 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 1.7e-31 140.2 127 55.9
VMungo0540G0999 Vigna mungo HOM05D006640 ORTHO05D008078 1.2e-29 134.0 145 51.0
Lj4C809G7 Lonicera japonica HOM05D006640 ORTHO05D008078 2.8e-29 132.9 145 51.7
Phvul.006G070300 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 6.2e-29 131.7 137 52.6
Nitab4.5_0001208g0130 Nicotiana tabacum HOM05D006640 ORTHO05D008078 4.0e-28 129.0 116 56.9
Sc24g0000300 Simmondsia chinensis HOM05D006640 ORTHO05D008078 2.6e-27 126.3 111 59.5
CBR_g30123 Chara braunii HOM05D006640 ORTHO05D008078 4.9e-26 122.1 193 35.2
Nitab4.5_0000383g0410 Nicotiana tabacum HOM05D006640 ORTHO05D008078 9.2e-25 117.9 112 55.4
CSS0011114 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 3.9e-23 112.5 151 42.4
AagrBONN_evm.TU.Sc2ySwM_362.2824 Anthoceros agrestis HOM05D006640 ORTHO05D008078 1.1e-22 110.9 154 40.3
Nitab4.5_0010095g0020 Nicotiana tabacum HOM05D006640 ORTHO05D008078 4.3e-22 109.0 89 60.7
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 4.7e-21 105.5 84 61.9
Cfa015562 Carpinus fangiana HOM05D006640 ORTHO05D008078 4.7e-21 105.5 189 32.3
Gohir.D09G047201 Gossypium hirsutum HOM05D006640 ORTHO05D008078 3.1e-20 102.8 108 50.0
RcHm_v2.0_Chr3g0481381 Rosa chinensis HOM05D006640 ORTHO05D008078 5.3e-20 102.1 107 51.4
RcHm_v2.0_Chr3g0481391 Rosa chinensis HOM05D006640 ORTHO05D008078 2.0e-19 100.1 84 63.1
Peaxi162Scf00139g00094 Petunia axillaris HOM05D006640 ORTHO05D008078 2.4e-17 93.2 101 48.5
Duzib205G1379 Durio zibethinus HOM05D006640 ORTHO05D008078 2.7e-16 89.7 103 48.5
Atru.chr3.42 Acer truncatum HOM05D006640 ORTHO05D008078 1.1e-14 84.3 69 55.1
CDE04G0756 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 8.4e-10 68.2 173 32.4
FvH4_6g22960 Fragaria vesca HOM05D006640 ORTHO05D008078 5.1e-07 58.9 78 43.6
Phvul.006G060400 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 8.7e-07 58.2 45 57.8
vmacro03672 Vaccinium macrocarpon HOM05D002991 ORTHO05D003480 1.5e-06 57.4 47 59.6


User provided reference genes

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