Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C013233.2 Cucumis melo HOM05D006489 ORTHO05D007556 1.2e-283 979.2 501 100.0
CsaV3_7G021220 Cucumis sativus L. HOM05D006489 ORTHO05D007556 3.1e-231 805.1 471 88.3
ClCG05G014300 Citrullus lanatus HOM05D006489 ORTHO05D007556 1.7e-224 782.7 493 83.2
Sed0018772 Sechium edule HOM05D006489 ORTHO05D007556 9.2e-191 670.6 513 71.2
Sed0021471 Sechium edule HOM05D006489 ORTHO05D007556 2.0e-140 503.4 401 68.8
Haze_09673 Corylus avellana HOM05D006489 ORTHO05D007556 4.5e-97 359.4 528 44.7
QL08p010454 Quercus lobata HOM05D006489 ORTHO05D007556 2.3e-88 330.5 520 44.2
CiPaw.12G129400 Carya illinoinensis HOM05D006489 ORTHO05D007556 2.5e-87 327.0 531 42.2
Dinv22265 Davidia involucrata HOM05D006489 ORTHO05D007556 7.1e-82 308.9 508 43.5
TWI15G0832 Tripterygium wilfordii HOM05D006489 ORTHO05D007556 1.0e-80 305.1 528 39.4
Cfa020351 Carpinus fangiana HOM05D006489 ORTHO05D007556 1.1e-79 301.6 563 40.9
Duzib213G0414 Durio zibethinus HOM05D006489 ORTHO05D007556 3.3e-79 300.1 519 38.5
Ciclev10008166m.g Citrus clementina HOM05D006489 ORTHO05D007556 4.3e-79 299.7 535 40.2
CSS0036232 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 7.3e-79 298.9 552 38.8
TAR627G0165 Trochodendron aralioides HOM05D006489 ORTHO05D007556 2.1e-78 297.4 522 40.0
CSS0017234 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 1.1e-77 295.0 552 38.6
vmacro09717 Vaccinium macrocarpon HOM05D006489 ORTHO05D007556 6.8e-77 292.4 522 38.7
Actinidia35341 Actinidia chinensis HOM05D006489 ORTHO05D007556 1.2e-76 291.6 522 41.0
Hma1.2p1_1162F.1_g262610 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 1.4e-74 284.6 531 39.7
Gorai.004G027700 Gossypium raimondii HOM05D006489 ORTHO05D007556 9.2e-74 282.0 520 39.4
Gohir.D08G030200 Gossypium hirsutum HOM05D006489 ORTHO05D007556 1.6e-73 281.2 520 39.4
TPR.G1166 Trifolium pratense HOM05D006489 ORTHO05D007556 1.3e-72 278.1 518 39.8
Sabra11G0125100 Salix brachista HOM05D006489 ORTHO05D007556 8.6e-72 275.4 543 39.8
COL.COLO4_19762 Corchorus olitorius HOM05D006489 ORTHO05D007556 9.6e-71 271.9 451 41.5
Potri.011G139200 Populus trichocarpa HOM05D006489 ORTHO05D007556 8.9e-69 265.4 542 39.7
Cpa.g.sc97.9 Carica papaya HOM05D006489 ORTHO05D007556 4.4e-68 263.1 517 40.0
Gohir.A08G019600 Gossypium hirsutum HOM05D006489 ORTHO05D007556 7.6e-68 262.3 519 38.7
Prupe.4G212300 Prunus persica HOM05D006489 ORTHO05D007556 8.4e-67 258.8 529 38.8
Manes.03G129000 Manihot esculenta HOM05D006489 ORTHO05D007556 2.7e-65 253.8 538 39.2
Ca_06317_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 3.5e-65 253.4 523 39.0
Peaxi162Scf00964g00023 Petunia axillaris HOM05D006489 ORTHO05D007556 5.1e-64 249.6 517 36.9
MBI02_g07154_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 2.5e-63 247.3 483 37.5
Cc09_g09720 Coffea canephora HOM05D006489 ORTHO05D007556 1.6e-62 244.6 528 34.8
Medtr5g092580 Medicago truncatula HOM05D006489 ORTHO05D007556 2.8e-62 243.8 602 35.2
Oeu062694.1 Olea europaea HOM05D006489 ORTHO05D007556 4.8e-62 243.0 505 36.8
Solyc07g064570.3 Solanum lycopersicum HOM05D006489 ORTHO05D007556 1.1e-61 241.9 522 36.4
Sopen07g032750 Solanum pennellii HOM05D006489 ORTHO05D007556 4.0e-61 240.0 527 36.1
GSVIVG01037644001 Vitis vinifera HOM05D006489 ORTHO05D007556 5.3e-61 239.6 518 36.5
CAN.G337.129 Capsicum annuum HOM05D006489 ORTHO05D007556 6.9e-61 239.2 583 35.2
LjContig00272g0011286 Lotus japonicus HOM05D006489 ORTHO05D007556 6.9e-61 239.2 525 37.7
PGSC0003DMG400022321 Solanum tuberosum HOM05D006489 ORTHO05D007556 9.0e-61 238.8 525 36.8
CANSAT11G2482 Cannabis sativa HOM05D006489 ORTHO05D007556 4.4e-60 236.5 559 34.7
VMungo0647G1504 Vigna mungo HOM05D006489 ORTHO05D007556 7.6e-60 235.7 563 37.1
Hma1.2p1_1162F.1_g262600 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 1.7e-59 234.6 423 41.8
arahy.Tifrunner.gnm1.ann1.I0Q6ZZ Arachis hypogaea HOM05D006489 ORTHO05D007556 3.8e-59 233.4 559 35.8
Glyma.02G290600 Glycine max HOM05D006489 ORTHO05D007556 3.8e-59 233.4 564 36.9
RhsimUnG0250900 Rhododendron simsii HOM05D006489 ORTHO05D007556 8.4e-59 232.3 650 31.5
DCAR_022559 Daucus carota HOM05D006489 ORTHO05D007556 4.2e-58 229.9 523 35.9
Phvul.008G267300 Phaseolus vulgaris HOM05D006489 ORTHO05D007556 7.8e-57 225.7 577 36.7
Nitab4.5_0011175g0010 Nicotiana tabacum HOM05D006489 ORTHO05D007556 1.3e-56 224.9 477 35.0
MBI18_g45561_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 3.0e-56 223.8 537 33.9
Ca_25386_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 4.3e-55 219.9 515 38.3
Atru.chr2.3342 Acer truncatum HOM05D006489 ORTHO05D007556 5.6e-55 219.5 359 40.7
Aqoxy1G03602 Aquilegia oxysepala HOM05D006489 ORTHO05D007556 7.3e-55 219.2 524 35.7
Migut.M01768 Erythranthe guttata HOM05D006489 ORTHO05D007556 1.6e-54 218.0 513 35.1
Nn1g03547 Nelumbo nucifera HOM05D006489 ORTHO05D007556 2.8e-54 217.2 531 34.3
PGR083G1541 Punica granatum HOM05D006489 ORTHO05D007556 1.8e-53 214.5 519 34.7
RcHm_v2.0_Chr5g0039401 Rosa chinensis HOM05D006489 ORTHO05D007556 3.1e-53 213.8 471 37.2
Psat2g011040 Pisum sativum HOM05D006489 ORTHO05D007556 9.0e-53 212.2 530 37.2
arahy.Tifrunner.gnm1.ann1.X6VDEX Arachis hypogaea HOM05D006489 ORTHO05D007556 1.5e-52 211.5 576 33.9
MD03G1201600 Malus domestica HOM05D006489 ORTHO05D007556 2.6e-52 210.7 529 36.1
Nitab4.5_0001913g0140 Nicotiana tabacum HOM05D006489 ORTHO05D007556 2.6e-52 210.7 477 34.0
CARHR096250 Cardamine hirsuta HOM05D006489 ORTHO05D007556 9.9e-52 208.8 524 35.7
Sc03g0008610 Simmondsia chinensis HOM05D006489 ORTHO05D007556 9.9e-52 208.8 409 36.9
Eucgr.F00766 Eucalyptus grandis HOM05D006489 ORTHO05D007556 2.9e-51 207.2 392 36.5
FvH4_3g22630 Fragaria vesca HOM05D006489 ORTHO05D007556 3.8e-51 206.8 417 39.8
FAN25G3282 Fragaria x ananassa HOM05D006489 ORTHO05D007556 6.4e-51 206.1 514 34.8
Lsat_1_v5_gn_9_94040 Lactuca sativa HOM05D006489 ORTHO05D007556 1.4e-50 204.9 529 36.9
AUR62015766 Chenopodium quinoa HOM05D006489 ORTHO05D007556 1.9e-50 204.5 618 32.8
FAN21G0022 Fragaria x ananassa HOM05D006489 ORTHO05D007556 1.9e-50 204.5 417 39.1
AT3G20490 Arabidopsis thaliana HOM05D006489 ORTHO05D007556 4.2e-50 203.4 515 34.4
Aa31LG8G7280 Aethionema arabicum HOM05D006489 ORTHO05D007556 9.3e-50 202.2 521 33.2
ATR0752G219 Amborella trichopoda HOM05D006489 ORTHO05D007556 1.2e-49 201.8 508 32.1
HanXRQChr08g0220561 Helianthus annuus HOM05D006489 ORTHO05D007556 2.7e-49 200.7 531 35.6
THA.LOC104817868 Tarenaya hassleriana HOM05D006489 ORTHO05D007556 4.6e-49 199.9 504 33.9
SGA_v2.0_scaffold80G25948 Striga asiatica HOM05D006489 ORTHO05D007556 7.9e-49 199.1 526 34.8
Atru.BG.151.p Acer truncatum HOM05D006489 ORTHO05D007556 1.0e-48 198.7 410 36.1
EL10Ac4g07823 Beta vulgaris HOM05D006489 ORTHO05D007556 1.3e-48 198.4 596 32.6
ECA240G0124 Erigeron canadensis HOM05D006489 ORTHO05D007556 1.8e-48 198.0 536 35.6
AL3G34270 Arabidopsis lyrata HOM05D006489 ORTHO05D007556 3.9e-48 196.8 516 34.7
Carub.0003s2045 Capsella rubella HOM05D006489 ORTHO05D007556 3.9e-48 196.8 506 35.4
TPR.G36685 Trifolium pratense HOM05D006489 ORTHO05D007556 6.7e-48 196.1 582 32.1
HanXRQChr03g0076541 Helianthus annuus HOM05D006489 ORTHO05D007556 8.7e-48 195.7 525 35.4
Lalb_Chr17g0348451 Lupinus albus HOM05D006489 ORTHO05D007556 3.3e-47 193.7 456 33.1
Hund23251 Selenicereus undatus HOM05D006489 ORTHO05D007556 4.3e-47 193.4 474 35.0
Lj1A872T56 Lonicera japonica HOM05D006489 ORTHO05D007556 4.8e-46 189.9 364 38.7
Glyma.14G024100 Glycine max HOM05D006489 ORTHO05D007556 1.4e-45 188.3 386 39.6
HPP92_013323 Vanilla planifolia HOM05D006489 ORTHO05D007556 1.2e-44 185.3 548 29.7
Thecc.07G037900 Theobroma cacao HOM05D006489 ORTHO05D007556 7.6e-44 182.6 358 38.8
CDE02G1695 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 9.3e-42 175.6 548 33.6
BcaB06g27045 Brassica carinata HOM05D006489 ORTHO05D007556 1.2e-41 175.3 551 31.2
AUR62020449 Chenopodium quinoa HOM05D006489 ORTHO05D007556 1.6e-41 174.9 577 31.4
PSO675G7358 Papaver somniferum HOM05D006489 ORTHO05D007556 3.5e-41 173.7 372 35.5
Lalb_Chr10g0106941 Lupinus albus HOM05D006489 ORTHO05D007556 7.9e-41 172.6 360 36.7
BraA04t16706Z Brassica rapa HOM05D006489 ORTHO05D007556 1.0e-40 172.2 516 32.6
PSO541G0970 Papaver somniferum HOM05D006489 ORTHO05D007556 1.0e-40 172.2 522 32.2
CDE05G3553 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 3.9e-40 170.2 547 33.3
Medtr6g033325 Medicago truncatula HOM05D006489 ORTHO05D007556 3.3e-39 167.2 605 29.6
FAN16G1490 Fragaria x ananassa HOM05D006489 ORTHO05D007556 2.9e-35 154.1 279 40.5
BcaC02g09533 Brassica carinata HOM05D006489 ORTHO05D007556 6.1e-33 146.4 617 28.4
BolC4t25966H Brassica oleracea HOM05D006489 ORTHO05D007556 6.1e-33 146.4 617 28.4
Psat1g097920 Pisum sativum HOM05D006489 ORTHO05D007556 6.1e-33 146.4 353 36.5
A04p10340 Brassica napus HOM05D006489 ORTHO05D007556 1.3e-32 145.2 619 28.8
C04p43850 Brassica napus HOM05D006489 ORTHO05D007556 7.4e-31 139.4 617 27.7
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 3.7e-30 137.1 484 30.6
Thhalv10028177m.g Eutrema salsugineum HOM05D006489 ORTHO05D007556 6.3e-30 136.3 518 29.7
Sp7g05570 Schrenkiella parvula HOM05D006489 ORTHO05D007556 1.2e-28 132.1 318 33.6
Zm00001eb431300 Zea mays HOM05D006489 ORTHO05D007556 2.0e-23 114.8 423 29.3
HanXRQChr11g0337701 Helianthus annuus HOM05D006489 ORTHO05D007556 1.3e-22 112.1 518 28.0
Lsat_1_v5_gn_7_108561 Lactuca sativa HOM05D006489 ORTHO05D007556 1.8e-21 108.2 234 37.6
Os04g0625100 Oryza sativa ssp. japonica HOM05D006489 ORTHO05D007556 3.4e-20 104.0 483 26.5
ECA236G1547 Erigeron canadensis HOM05D006489 ORTHO05D007556 1.9e-18 98.2 229 33.2
SEGI_05401 Sequoiadendron giganteum HOM05D006489 ORTHO05D007556 3.7e-14 84.0 547 26.5
Psat0s2568g0040 Pisum sativum HOM05D006489 ORTHO05D007556 1.5e-12 78.6 100 43.0
Lj8A169G92 Lonicera japonica HOM05D006489 ORTHO05D007556 4.5e-12 77.0 60 63.3
Actinidia10733 Actinidia chinensis HOM05D006489 ORTHO05D007556 2.2e-11 74.7 241 30.3


User provided reference genes

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