Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C013227.2 Cucumis melo HOM05D005664 ORTHO05D006509 0.0e+00 1434.5 732 100.0
CsaV3_7G021290 Cucumis sativus L. HOM05D005664 ORTHO05D006509 0.0e+00 1392.5 732 97.0
ClCG09G021770 Citrullus lanatus HOM05D005664 ORTHO05D006509 0.0e+00 1319.3 734 92.2
Sed0014853 Sechium edule HOM05D005664 ORTHO05D006509 0.0e+00 1100.9 735 79.7
Sed0021044 Sechium edule HOM05D005664 ORTHO05D006509 0.0e+00 1093.6 709 81.2
QL08p000429 Quercus lobata HOM05D005664 ORTHO05D006509 1.6e-162 577.4 746 47.9
Dinv40921 Davidia involucrata HOM05D005664 ORTHO05D006509 7.2e-160 568.5 749 48.5
Cfa016966 Carpinus fangiana HOM05D005664 ORTHO05D006509 2.0e-154 550.4 748 47.2
Haze_09920 Corylus avellana HOM05D005664 ORTHO05D006509 3.7e-148 529.6 763 45.2
Dinv19639 Davidia involucrata HOM05D005664 ORTHO05D006509 1.9e-144 517.3 725 46.1
Manes.01G007400 Manihot esculenta HOM05D005664 ORTHO05D006509 7.0e-139 498.8 734 45.2
CSS0022030 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 6.6e-137 492.3 799 42.7
CiPaw.12G143100 Carya illinoinensis HOM05D005664 ORTHO05D006509 2.1e-135 487.3 753 44.0
CSS0015837 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 6.1e-135 485.7 758 43.9
Potri.001G472600 Populus trichocarpa HOM05D005664 ORTHO05D006509 1.8e-134 484.2 735 43.0
Manes.01G007300 Manihot esculenta HOM05D005664 ORTHO05D006509 2.6e-133 480.3 735 44.6
Atru.chr2.3903 Acer truncatum HOM05D005664 ORTHO05D006509 9.8e-133 478.4 733 43.8
Sabra16G0320800 Salix brachista HOM05D005664 ORTHO05D006509 3.7e-132 476.5 733 43.1
Rhsim06G0235600 Rhododendron simsii HOM05D005664 ORTHO05D006509 6.4e-132 475.7 759 42.8
Potri.011G169200 Populus trichocarpa HOM05D005664 ORTHO05D006509 1.9e-131 474.2 738 42.8
TAR627G1206 Trochodendron aralioides HOM05D005664 ORTHO05D006509 1.6e-130 471.1 748 43.0
Ciclev10007600m.g Citrus clementina HOM05D005664 ORTHO05D006509 2.7e-130 470.3 735 44.5
Hma1.2p1_0193F.1_g084390 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 3.5e-130 469.9 752 44.0
Sabra11G0137600 Salix brachista HOM05D005664 ORTHO05D006509 7.8e-130 468.8 735 44.1
MD11G1047100 Malus domestica HOM05D005664 ORTHO05D006509 2.3e-129 467.2 749 44.2
TAR629G3046 Trochodendron aralioides HOM05D005664 ORTHO05D006509 5.0e-129 466.1 746 43.8
MD03G1043600 Malus domestica HOM05D005664 ORTHO05D006509 3.1e-126 456.8 754 43.0
vmacro11645 Vaccinium macrocarpon HOM05D005664 ORTHO05D006509 1.5e-125 454.5 768 42.2
Prupe.6G035900 Prunus persica HOM05D005664 ORTHO05D006509 2.1e-122 444.1 760 42.2
Nn1g09430 Nelumbo nucifera HOM05D005664 ORTHO05D006509 7.3e-120 435.6 872 37.3
Thecc.07G000900 Theobroma cacao HOM05D005664 ORTHO05D006509 1.4e-118 431.4 765 43.3
Actinidia30345 Actinidia chinensis HOM05D005664 ORTHO05D006509 1.8e-118 431.0 750 41.1
Cpa.g.sc12.60 Carica papaya HOM05D005664 ORTHO05D006509 1.2e-117 428.3 804 40.2
Duzib170G1037 Durio zibethinus HOM05D005664 ORTHO05D006509 1.5e-117 427.9 762 43.0
Eucgr.F01983 Eucalyptus grandis HOM05D005664 ORTHO05D006509 1.7e-116 424.5 758 38.4
TWI39G0285 Tripterygium wilfordii HOM05D005664 ORTHO05D006509 8.3e-116 422.2 767 40.3
Duzib268G0032 Durio zibethinus HOM05D005664 ORTHO05D006509 1.9e-115 421.0 755 42.8
Gorai.013G147600 Gossypium raimondii HOM05D005664 ORTHO05D006509 8.9e-110 402.1 759 41.5
Gohir.A13G128200 Gossypium hirsutum HOM05D005664 ORTHO05D006509 2.9e-108 397.1 759 41.2
Gohir.D13G131600 Gossypium hirsutum HOM05D005664 ORTHO05D006509 8.4e-108 395.6 759 41.1
COL.COLO4_30921 Corchorus olitorius HOM05D005664 ORTHO05D006509 1.9e-107 394.4 749 41.9
Cc05_g15770 Coffea canephora HOM05D005664 ORTHO05D006509 2.4e-107 394.0 752 41.1
Nn7g37452 Nelumbo nucifera HOM05D005664 ORTHO05D006509 5.4e-107 392.9 902 34.6
Oeu015275.1 Olea europaea HOM05D005664 ORTHO05D006509 7.3e-104 382.5 744 38.4
Oeu052022.1 Olea europaea HOM05D005664 ORTHO05D006509 1.4e-102 378.3 742 37.7
CSS0025023 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 6.4e-100 369.4 703 38.3
FvH4_3g41520 Fragaria vesca HOM05D005664 ORTHO05D006509 1.9e-99 367.9 756 38.4
RcHm_v2.0_Chr5g0074471 Rosa chinensis HOM05D005664 ORTHO05D006509 5.4e-99 366.3 748 39.6
FAN11G0133 Fragaria x ananassa HOM05D005664 ORTHO05D006509 7.9e-98 362.5 756 38.8
FAN21G3314 Fragaria x ananassa HOM05D005664 ORTHO05D006509 3.0e-97 360.5 763 38.7
FAN16G2562 Fragaria x ananassa HOM05D005664 ORTHO05D006509 3.9e-97 360.1 760 38.4
CAN.G492.59 Capsicum annuum HOM05D005664 ORTHO05D006509 6.6e-97 359.4 744 37.6
FAN25G3031 Fragaria x ananassa HOM05D005664 ORTHO05D006509 9.6e-96 355.5 754 38.2
PGSC0003DMG400011270 Solanum tuberosum HOM05D005664 ORTHO05D006509 1.1e-94 352.1 749 36.8
DCAR_016806 Daucus carota HOM05D005664 ORTHO05D006509 1.8e-94 351.3 753 38.4
THA.LOC104813471 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 6.9e-94 349.4 759 37.0
Solyc10g005700.3 Solanum lycopersicum HOM05D005664 ORTHO05D006509 4.2e-91 340.1 756 36.6
SalBow8G4453 Salvia bowleyana HOM05D005664 ORTHO05D006509 2.1e-90 337.8 733 38.7
Sopen10g001670 Solanum pennellii HOM05D005664 ORTHO05D006509 3.5e-90 337.0 755 36.6
Hma1.2p1_0321F.1_g124370 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 5.1e-89 333.2 748 37.3
MBI14_g10255_MAGBIO Magnolia biondii HOM05D005664 ORTHO05D006509 4.3e-88 330.1 751 36.4
MSTRG.16129 Avicennia marina HOM05D005664 ORTHO05D006509 5.6e-88 329.7 752 37.4
Nitab4.5_0000611g0180 Nicotiana tabacum HOM05D005664 ORTHO05D006509 9.6e-88 328.9 743 35.9
THA.LOC104813465 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 1.6e-87 328.2 757 35.8
Lj3g0022247 Lotus japonicus HOM05D005664 ORTHO05D006509 5.8e-85 319.7 744 35.8
arahy.Tifrunner.gnm1.ann1.C46LV5 Arachis hypogaea HOM05D005664 ORTHO05D006509 3.8e-84 317.0 741 35.8
Lalb_Chr18g0048701 Lupinus albus HOM05D005664 ORTHO05D006509 1.4e-83 315.1 745 35.8
arahy.Tifrunner.gnm1.ann1.GFW533 Arachis hypogaea HOM05D005664 ORTHO05D006509 9.3e-83 312.4 741 35.4
Nitab4.5_0001622g0140 Nicotiana tabacum HOM05D005664 ORTHO05D006509 1.2e-82 312.0 735 35.6
Peaxi162Scf00006g00092 Petunia axillaris HOM05D005664 ORTHO05D006509 1.2e-82 312.0 754 36.3
Aqoxy1G04294 Aquilegia oxysepala HOM05D005664 ORTHO05D006509 3.9e-81 307.0 761 35.9
PGSC0003DMG400002313 Solanum tuberosum HOM05D005664 ORTHO05D006509 3.3e-80 303.9 746 35.8
CAN.G8.46 Capsicum annuum HOM05D005664 ORTHO05D006509 3.7e-79 300.4 760 34.6
Glyma.06G321000 Glycine max HOM05D005664 ORTHO05D006509 9.0e-78 295.8 731 34.7
Migut.M01578 Erythranthe guttata HOM05D005664 ORTHO05D006509 4.5e-77 293.5 736 35.6
Glyma.04G114300 Glycine max HOM05D005664 ORTHO05D006509 1.3e-76 292.0 730 34.5
Sopen12g008050 Solanum pennellii HOM05D005664 ORTHO05D006509 9.3e-75 285.8 765 35.0
Solyc12g017230.2 Solanum lycopersicum HOM05D005664 ORTHO05D006509 2.7e-74 284.3 766 34.7
Carub.0007s1448 Capsella rubella HOM05D005664 ORTHO05D006509 6.1e-74 283.1 762 33.2
Aa31LG5G11790 Aethionema arabicum HOM05D005664 ORTHO05D006509 3.9e-73 280.4 771 33.1
Sp7g24360 Schrenkiella parvula HOM05D005664 ORTHO05D006509 5.1e-73 280.0 760 32.8
CARHR234010 Cardamine hirsuta HOM05D005664 ORTHO05D006509 1.5e-72 278.5 781 33.4
PSO063G4895 Papaver somniferum HOM05D005664 ORTHO05D006509 1.5e-72 278.5 743 33.2
TPR.G16700 Trifolium pratense HOM05D005664 ORTHO05D006509 7.4e-72 276.2 774 34.4
AL7G26500 Arabidopsis lyrata HOM05D005664 ORTHO05D006509 2.2e-71 274.6 772 32.5
PSO782G2174 Papaver somniferum HOM05D005664 ORTHO05D006509 4.8e-71 273.5 743 33.1
AT4G26450 Arabidopsis thaliana HOM05D005664 ORTHO05D006509 6.3e-71 273.1 763 32.8
Thhalv10024531m.g Eutrema salsugineum HOM05D005664 ORTHO05D006509 3.1e-70 270.8 788 32.2
Lalb_Chr15g0079911 Lupinus albus HOM05D005664 ORTHO05D006509 3.1e-70 270.8 710 33.0
Ca_14130_v3 Cicer arietinum L. HOM05D005664 ORTHO05D006509 9.0e-70 269.2 711 35.0
Phvul.005G005100 Phaseolus vulgaris HOM05D005664 ORTHO05D006509 1.4e-67 261.9 738 32.9
SGA_v2.0_scaffold186G40232 Striga asiatica HOM05D005664 ORTHO05D006509 3.2e-67 260.8 745 33.2
Psat5g231360 Pisum sativum HOM05D005664 ORTHO05D006509 4.2e-67 260.4 811 33.9
Medtr3g009540 Medicago truncatula HOM05D005664 ORTHO05D006509 1.6e-66 258.5 743 33.6
Lsat_1_v5_gn_7_115861 Lactuca sativa HOM05D005664 ORTHO05D006509 1.4e-65 255.4 731 33.2
Oeu062669.1 Olea europaea HOM05D005664 ORTHO05D006509 1.1e-64 252.3 742 34.9
VMungo1080G0452 Vigna mungo HOM05D005664 ORTHO05D006509 1.5e-64 251.9 738 33.1
HanXRQChr17g0546881 Helianthus annuus HOM05D005664 ORTHO05D006509 4.3e-64 250.4 733 32.6
AUR62015929 Chenopodium quinoa HOM05D005664 ORTHO05D006509 1.1e-62 245.7 710 34.9
AUR62040680 Chenopodium quinoa HOM05D005664 ORTHO05D006509 6.9e-62 243.0 708 33.5
unitig_37.g12212 Utricularia gibba HOM05D005664 ORTHO05D006509 1.5e-61 241.9 743 32.0
Hund01929 Selenicereus undatus HOM05D005664 ORTHO05D006509 3.4e-61 240.7 724 32.0
EL10Ac4g07635 Beta vulgaris HOM05D005664 ORTHO05D006509 1.1e-59 235.7 705 33.3
Hund01927 Selenicereus undatus HOM05D005664 ORTHO05D006509 3.6e-58 230.7 692 31.8
Sc03g0011800 Simmondsia chinensis HOM05D005664 ORTHO05D006509 5.1e-57 226.9 748 33.0
A03p56710 Brassica napus HOM05D005664 ORTHO05D006509 1.1e-56 225.7 785 31.2
BraA03t14741Z Brassica rapa HOM05D005664 ORTHO05D006509 1.1e-56 225.7 785 31.2
C07p54910 Brassica napus HOM05D005664 ORTHO05D006509 3.7e-55 220.7 776 30.7
BolC7t45979H Brassica oleracea HOM05D005664 ORTHO05D006509 3.7e-55 220.7 776 30.7
BcaC06g32747 Brassica carinata HOM05D005664 ORTHO05D006509 1.2e-53 215.7 783 30.1
CANSAT11G1251 Cannabis sativa HOM05D005664 ORTHO05D006509 2.9e-52 211.1 735 31.3
A01p17690 Brassica napus HOM05D005664 ORTHO05D006509 3.8e-52 210.7 763 30.3
Ah.04g166380 Amaranthus hybridus HOM05D005664 ORTHO05D006509 1.9e-51 208.4 720 31.5
BraA01t01725Z Brassica rapa HOM05D005664 ORTHO05D006509 1.6e-50 205.3 764 30.1
ECA236G2587 Erigeron canadensis HOM05D005664 ORTHO05D006509 4.7e-50 203.8 731 29.7
BcaC09g50709 Brassica carinata HOM05D005664 ORTHO05D006509 6.1e-50 203.4 759 29.9
C01p22360 Brassica napus HOM05D005664 ORTHO05D006509 6.1e-50 203.4 756 29.8
BolC1t02167H Brassica oleracea HOM05D005664 ORTHO05D006509 4.0e-49 200.7 765 30.1
Lj1A901T36 Lonicera japonica HOM05D005664 ORTHO05D006509 5.2e-49 200.3 285 48.4
GSVIVG01014850001 Vitis vinifera HOM05D005664 ORTHO05D006509 1.9e-43 181.8 157 61.1
CDE11G0421 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 2.6e-40 171.4 753 29.0
Ah.06g181030 Amaranthus hybridus HOM05D000037 ORTHO05D006509 9.8e-40 169.5 701 28.7
Lj1A901G38 Lonicera japonica HOM05D005664 ORTHO05D006509 2.7e-37 161.4 114 68.4
CDE05G2921 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 1.0e-33 149.4 749 27.2
unitig_46.g18526 Utricularia gibba HOM05D005664 ORTHO05D006509 4.0e-33 147.5 674 29.7
MSTRG.13052 Avicennia marina HOM05D005664 ORTHO05D006509 4.1e-30 137.5 567 28.7
ATR0021G035 Amborella trichopoda HOM05D005664 ORTHO05D006509 6.1e-26 123.6 856 27.1
Migut.H01706 Erythranthe guttata HOM05D005664 ORTHO05D006509 3.0e-25 121.3 173 43.9
HPP92_019365 Vanilla planifolia HOM05D005664 ORTHO05D006509 1.5e-24 119.0 702 28.5
Zm00001eb422560 Zea mays HOM05D019841 ORTHO05D006509 2.0e-16 92.0 778 23.8
MSTRG.7045 Avicennia marina HOM05D005664 ORTHO05D006509 2.0e-13 82.0 100 45.0
Zm00001eb082760 Zea mays HOM05D019841 ORTHO05D006509 2.3e-12 78.6 817 23.3
Os02g0550000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D037008 1.1e-11 76.3 754 22.4
SEGI_32826 Sequoiadendron giganteum HOM05D005664 ORTHO05D006509 1.2e-10 72.8 864 23.8
Os04g0431000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D006509 2.6e-08 65.1 215 29.8
Psat6g196680 Pisum sativum HOM05D005664 ORTHO05D006509 3.4e-08 64.7 112 37.5
AUR62017309 Chenopodium quinoa HOM05D005664 ORTHO05D006509 7.1e-06 57.0 90 40.0


User provided reference genes

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