Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 3.4e-220 768.1 402 100.0
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 1.3e-214 749.6 408 97.5
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 5.1e-208 727.6 430 91.2
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 2.8e-206 721.8 408 93.4
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 8.4e-203 710.3 408 91.9
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 9.4e-186 653.7 407 83.8
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 2.6e-180 635.6 407 82.1
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 3.4e-180 635.2 409 81.4
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 4.5e-180 634.8 409 82.4
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 1.3e-179 633.3 409 81.7
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 3.8e-179 631.7 409 80.7
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 3.8e-179 631.7 408 81.4
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 6.5e-179 630.9 408 80.6
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 5.5e-178 627.9 408 81.9
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 2.1e-177 625.9 408 80.1
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 4.7e-177 624.8 409 81.2
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 6.1e-177 624.4 414 79.7
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 5.1e-176 621.3 409 79.5
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 5.7e-175 617.8 408 79.4
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 7.4e-175 617.5 408 80.6
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 7.4e-175 617.5 410 80.0
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 9.7e-175 617.1 414 79.2
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 1.7e-174 616.3 407 79.6
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 1.7e-174 616.3 408 80.6
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 1.2e-172 610.1 408 79.7
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 4.5e-172 608.2 412 78.2
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 7.7e-172 607.4 422 76.8
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 1.7e-171 606.3 412 78.4
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 1.7e-171 606.3 408 78.4
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 5.0e-171 604.7 409 78.0
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 8.5e-171 604.0 408 77.9
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 1.9e-170 602.8 407 77.4
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 3.2e-170 602.1 416 77.4
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 4.2e-170 601.7 412 77.9
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 7.2e-170 600.9 412 77.7
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.2e-169 600.1 409 77.5
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 1.2e-169 600.1 409 76.3
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 1.6e-169 599.7 410 77.6
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 2.7e-169 599.0 408 76.5
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 4.7e-169 598.2 403 77.4
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 6.1e-169 597.8 423 76.4
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 1.0e-168 597.0 410 77.8
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 4.0e-168 595.1 407 75.9
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 5.2e-168 594.7 414 76.3
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 6.7e-168 594.3 410 75.9
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 1.1e-167 593.6 407 77.1
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 1.1e-167 593.6 409 76.5
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.1e-167 593.6 417 76.0
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 2.0e-167 592.8 446 73.8
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 2.6e-167 592.4 414 75.8
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 4.4e-167 591.7 412 76.5
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 9.7e-167 590.5 418 76.6
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.7e-166 589.7 408 76.0
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 2.2e-166 589.3 413 77.0
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 2.2e-166 589.3 415 77.8
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 3.7e-166 588.6 414 75.6
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 3.7e-166 588.6 408 75.7
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 6.3e-166 587.8 407 77.1
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 2.4e-165 585.9 411 76.4
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 2.4e-165 585.9 409 77.3
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 3.1e-165 585.5 413 76.3
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 4.1e-165 585.1 407 75.9
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 5.3e-165 584.7 409 75.8
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 5.3e-165 584.7 409 74.8
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 7.0e-165 584.3 407 74.4
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.6e-164 583.2 408 75.0
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 4.5e-164 581.6 414 74.6
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 7.7e-164 580.9 415 75.4
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.0e-163 580.5 418 74.2
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 1.0e-163 580.5 409 75.8
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 1.3e-163 580.1 409 75.6
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 3.8e-163 578.6 410 74.9
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 3.8e-163 578.6 410 75.9
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 5.0e-163 578.2 411 74.2
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 5.0e-163 578.2 418 73.9
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 5.0e-163 578.2 404 76.2
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 6.5e-163 577.8 411 74.2
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 3.2e-162 575.5 428 73.4
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 4.2e-162 575.1 419 73.0
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 9.4e-162 573.9 417 72.7
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 9.4e-162 573.9 414 75.1
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 9.4e-162 573.9 411 75.4
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 2.7e-161 572.4 413 75.1
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 3.6e-161 572.0 438 70.8
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 8.0e-161 570.9 438 70.5
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 8.8e-160 567.4 408 72.5
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.2e-159 567.0 425 71.5
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 1.5e-159 566.6 410 74.1
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 9.8e-159 563.9 341 85.3
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 1.3e-158 563.5 411 73.0
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 6.3e-158 561.2 412 72.8
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 9.1e-157 557.4 408 73.0
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.2e-156 557.0 407 73.0
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 1.6e-156 556.6 357 81.8
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 1.5e-154 550.1 414 70.8
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 9.5e-154 547.4 409 72.6
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 4.7e-153 545.0 410 69.8
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 6.8e-152 541.2 414 71.5
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 8.8e-152 540.8 385 73.0
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 8.3e-150 534.3 362 77.3
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 8.3e-150 534.3 362 77.3
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 1.3e-147 526.9 350 78.6
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 2.3e-147 526.2 403 71.0
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 1.1e-146 523.9 413 69.0
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 2.3e-144 516.2 470 63.4
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 2.3e-144 516.2 470 63.4
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 2.6e-143 512.7 412 68.4
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 3.3e-138 495.7 315 81.0
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 2.1e-137 493.0 353 74.8
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 1.6e-129 466.8 408 65.0
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 2.8e-129 466.1 415 59.0
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 8.3e-126 454.5 354 70.1
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 7.8e-124 448.0 427 56.0
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 1.6e-121 440.3 420 61.9
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 1.3e-115 420.6 271 79.7
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 1.2e-111 407.5 410 59.3
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 1.7e-107 393.7 383 54.6
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 9.9e-103 377.9 324 66.0
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 2.0e-95 353.6 357 60.5
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 1.2e-92 344.4 343 58.9
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 3.7e-81 306.2 315 53.0
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 2.6e-79 300.1 420 43.1
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 9.1e-72 275.0 424 41.0
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 2.6e-71 273.5 260 60.0
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.8e-64 250.8 319 44.8
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 9.1e-64 248.4 469 36.2
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 3.4e-63 246.5 463 36.5
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 4.7e-60 236.1 134 88.1
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 5.7e-58 229.2 309 42.7
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 8.0e-52 208.8 126 83.3
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 2.0e-47 194.1 332 37.0
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 8.3e-41 172.2 335 33.7
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 1.4e-40 171.4 131 69.5
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 7.7e-39 165.6 104 79.8
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.3e-38 164.1 104 78.8
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 3.8e-38 163.3 98 84.7
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 2.2e-33 147.5 112 69.6
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 2.3e-30 137.5 138 59.4
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 7.0e-24 115.9 65 87.7
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 1.7e-22 111.3 129 51.2
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.3e-22 110.9 59 83.1
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 5.8e-18 96.3 71 69.0
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 9.8e-18 95.5 102 52.9
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 1.3e-14 85.1 65 66.2
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 1.7e-14 84.7 132 44.7
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 3.9e-14 83.6 94 51.1
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 1.5e-13 81.6 101 42.6
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 5.2e-11 73.2 43 83.7
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 6.8e-11 72.8 52 73.1
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 1.5e-10 71.6 42 81.0
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 1.5e-10 71.6 41 82.9
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 9.9e-10 68.9 42 73.8
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 1.7e-09 68.2 64 57.8
QL05p082760 Quercus lobata HOM05D004608 ORTHO05D338097 2.9e-09 67.4 46 73.9
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 8.3e-09 65.9 36 86.1
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 8.3e-09 65.9 36 86.1
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 8.3e-09 65.9 36 86.1
CDE05G2773 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 2.4e-08 64.3 63 58.7
EL10Ac5g11554 Beta vulgaris HOM05D003131 ORTHO05D003761 7.1e-08 62.8 78 50.0
HanXRQChr16g0512931 Helianthus annuus HOM05D004608 ORTHO05D018951 1.6e-07 61.6 36 86.1
arahy.Tifrunner.gnm1.ann1.C1KQ7I Arachis hypogaea HOM05D004608 ORTHO05D006012 2.1e-07 61.2 67 49.3
MD05G1213500 Malus domestica HOM05D004608 ORTHO05D246297 1.7e-06 58.2 60 58.3
MD05G1213200 Malus domestica HOM05D004608 ORTHO05D006533 3.0e-06 57.4 64 56.2


User provided reference genes

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