Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C013197.2 Cucumis melo HOM05D006765 ORTHO05D008554 8.5e-185 650.2 330 100.0
CsaV3_7G021520 Cucumis sativus L. HOM05D006765 ORTHO05D008554 2.8e-159 565.5 331 89.4
ClCG09G021580 Citrullus lanatus HOM05D006765 ORTHO05D008554 7.8e-138 494.2 348 76.7
Sed0017860 Sechium edule HOM05D006765 ORTHO05D008554 5.1e-105 385.2 306 70.3
FAN11G3685 Fragaria x ananassa HOM05D006765 ORTHO05D008554 3.0e-73 279.6 330 51.8
RcHm_v2.0_Chr5g0075451 Rosa chinensis HOM05D006765 ORTHO05D008554 6.7e-73 278.5 338 48.5
FvH4_3g42180 Fragaria vesca HOM05D006765 ORTHO05D008554 8.8e-73 278.1 330 52.4
Sed0007098 Sechium edule HOM05D006765 ORTHO05D008554 1.7e-71 273.9 239 65.7
Prupe.6G029100 Prunus persica HOM05D006765 ORTHO05D008554 3.7e-71 272.7 343 47.5
FAN25G2031 Fragaria x ananassa HOM05D006765 ORTHO05D008554 1.8e-70 270.4 342 49.1
Cfa021898 Carpinus fangiana HOM05D006765 ORTHO05D008554 7.0e-70 268.5 326 49.4
TWI38G1422 Tripterygium wilfordii HOM05D006765 ORTHO05D008554 1.0e-68 264.6 324 48.5
QL08p002606 Quercus lobata HOM05D006765 ORTHO05D008554 1.3e-68 264.2 334 48.5
Manes.01G004100 Manihot esculenta HOM05D006765 ORTHO05D008554 5.0e-68 262.3 339 47.2
GSVIVG01014751001 Vitis vinifera HOM05D006765 ORTHO05D008554 5.0e-68 262.3 332 47.9
CSS0046328 Camellia sinensis var. sinensis HOM05D006765 ORTHO05D008554 6.5e-68 261.9 358 48.0
CSS0016155 Camellia sinensis var. sinensis HOM05D006765 ORTHO05D008554 8.5e-68 261.5 358 48.0
Actinidia03654 Actinidia chinensis HOM05D006765 ORTHO05D008554 6.7e-65 251.9 319 48.3
Dinv40889 Davidia involucrata HOM05D006765 ORTHO05D008554 2.0e-64 250.4 368 42.9
FAN21G2411 Fragaria x ananassa HOM05D006765 ORTHO05D008554 2.0e-64 250.4 323 49.2
Duzib213G0912 Durio zibethinus HOM05D006765 ORTHO05D008554 1.3e-63 247.7 333 45.9
Lj1A895T73 Lonicera japonica HOM05D006765 ORTHO05D008554 2.8e-63 246.5 328 44.8
Gohir.A04G004500 Gossypium hirsutum HOM05D006765 ORTHO05D008554 1.8e-62 243.8 332 46.4
FAN16G0764 Fragaria x ananassa HOM05D006765 ORTHO05D008554 9.1e-62 241.5 259 54.8
TAR629G2312 Trochodendron aralioides HOM05D006765 ORTHO05D008554 1.6e-61 240.7 337 47.2
COL.COLO4_07747 Corchorus olitorius HOM05D006765 ORTHO05D008554 3.5e-61 239.6 330 45.2
Gorai.009G452100 Gossypium raimondii HOM05D006765 ORTHO05D008554 7.7e-61 238.4 335 46.0
SGA_v2.0_scaffold168G38579 Striga asiatica HOM05D006765 ORTHO05D008554 2.9e-60 236.5 334 42.5
Peaxi162Scf00232g00025 Petunia axillaris HOM05D006765 ORTHO05D008554 5.0e-60 235.7 334 42.5
Sabra16G0317200 Salix brachista HOM05D006765 ORTHO05D008554 6.5e-60 235.3 375 39.5
Eucgr.F02021 Eucalyptus grandis HOM05D006765 ORTHO05D008554 1.1e-59 234.6 331 42.6
Ciclev10008671m.g Citrus clementina HOM05D006765 ORTHO05D008554 2.5e-59 233.4 378 38.4
Gohir.D05G385400 Gossypium hirsutum HOM05D006765 ORTHO05D008554 3.2e-59 233.0 332 45.2
MBI15_g19869_MAGBIO Magnolia biondii HOM05D006765 ORTHO05D008554 5.5e-59 232.3 329 44.1
Oeu005464.1 Olea europaea HOM05D006765 ORTHO05D008554 5.5e-59 232.3 326 43.3
Cpa.g.sc12.101 Carica papaya HOM05D006765 ORTHO05D008554 7.2e-59 231.9 328 42.7
CAN.G623.40 Capsicum annuum HOM05D006765 ORTHO05D008554 2.1e-58 230.3 329 41.9
Nn1g07719 Nelumbo nucifera HOM05D006765 ORTHO05D008554 2.7e-58 229.9 322 44.1
Nitab4.5_0003130g0010 Nicotiana tabacum HOM05D006765 ORTHO05D008554 4.7e-58 229.2 337 41.2
CiPaw.11G207500 Carya illinoinensis HOM05D006765 ORTHO05D008554 8.0e-58 228.4 300 46.0
PGSC0003DMG400022157 Solanum tuberosum HOM05D006765 ORTHO05D008554 8.0e-58 228.4 329 41.9
CANSAT11G0072 Cannabis sativa HOM05D006765 ORTHO05D008554 1.0e-57 228.0 331 45.3
Solyc07g065870.3 Solanum lycopersicum HOM05D006765 ORTHO05D008554 3.0e-57 226.5 336 42.0
Sopen07g034060 Solanum pennellii HOM05D006765 ORTHO05D008554 5.2e-57 225.7 334 41.6
Haze_09874 Corylus avellana HOM05D006765 ORTHO05D008554 2.0e-56 223.8 249 49.4
Potri.001G467400 Populus trichocarpa HOM05D006765 ORTHO05D008554 5.7e-56 222.2 375 38.7
PGR083G0751 Punica granatum HOM05D006765 ORTHO05D008554 1.4e-54 217.6 357 39.2
LjContig00081g0022778 Lotus japonicus HOM05D006765 ORTHO05D008554 7.0e-54 215.3 340 43.8
Migut.M01623 Erythranthe guttata HOM05D006765 ORTHO05D008554 3.5e-53 213.0 334 40.1
EL10Ac4g07518 Beta vulgaris HOM05D006765 ORTHO05D008554 4.5e-53 212.6 378 38.1
Glyma.02G302700 Glycine max HOM05D006765 ORTHO05D008554 7.7e-53 211.8 335 44.8
SalBow8G5524 Salvia bowleyana HOM05D006765 ORTHO05D008554 3.8e-52 209.5 345 40.6
Hma1.2p1_1094F.1_g256340 Hydrangea macrophylla HOM05D006765 ORTHO05D008554 5.0e-52 209.1 171 60.2
Nitab4.5_0000152g0290 Nicotiana tabacum HOM05D006765 ORTHO05D008554 5.0e-52 209.1 314 42.4
Rhsim04G0010100 Rhododendron simsii HOM05D006765 ORTHO05D008554 5.0e-52 209.1 211 53.6
THA.LOC104801913 Tarenaya hassleriana HOM05D006765 ORTHO05D008554 6.5e-52 208.8 352 41.2
ECA236G1773 Erigeron canadensis HOM05D006765 ORTHO05D008554 8.5e-52 208.4 320 43.1
Cc05_g15360 Coffea canephora HOM05D006765 ORTHO05D008554 1.1e-51 208.0 234 51.3
Lsat_1_v5_gn_7_114860 Lactuca sativa HOM05D006765 ORTHO05D008554 4.2e-51 206.1 349 39.5
Glyma.14G011300 Glycine max HOM05D006765 ORTHO05D008554 1.6e-50 204.1 335 42.7
CARHR087860 Cardamine hirsuta HOM05D006765 ORTHO05D008554 2.7e-50 203.4 341 38.4
Sc03g0011660 Simmondsia chinensis HOM05D006765 ORTHO05D008554 2.7e-50 203.4 215 49.8
TPR.G1253 Trifolium pratense HOM05D006765 ORTHO05D008554 8.0e-50 201.8 324 41.4
Ah.08g214160 Amaranthus hybridus HOM05D006765 ORTHO05D008554 4.0e-49 199.5 366 36.1
Ca_06420_v3 Cicer arietinum L. HOM05D006765 ORTHO05D008554 5.2e-49 199.1 170 59.4
Phvul.008G281600 Phaseolus vulgaris HOM05D006765 ORTHO05D008554 6.8e-49 198.7 335 42.1
Hund01854 Selenicereus undatus HOM05D006765 ORTHO05D008554 6.8e-49 198.7 169 55.6
HanXRQChr15g0488021 Helianthus annuus HOM05D006765 ORTHO05D008554 1.5e-48 197.6 367 39.2
Carub.0003s1262 Capsella rubella HOM05D006765 ORTHO05D008554 2.0e-48 197.2 326 38.3
Aa31LG8G470 Aethionema arabicum HOM05D006765 ORTHO05D008554 2.6e-48 196.8 338 36.1
Medtr5g096560 Medicago truncatula HOM05D006765 ORTHO05D008554 9.8e-48 194.9 161 57.8
AUR62017157 Chenopodium quinoa HOM05D006765 ORTHO05D008554 1.3e-47 194.5 229 46.3
BcaB04g21007 Brassica carinata HOM05D006765 ORTHO05D008554 3.7e-47 193.0 382 33.5
Lalb_Chr04g0247731 Lupinus albus HOM05D006765 ORTHO05D008554 6.3e-47 192.2 295 40.7
Aqoxy2G01345 Aquilegia oxysepala HOM05D006765 ORTHO05D008554 1.8e-46 190.7 324 39.5
AUR62035647 Chenopodium quinoa HOM05D006765 ORTHO05D008554 2.4e-46 190.3 229 45.9
Psat2g006160 Pisum sativum HOM05D006765 ORTHO05D008554 3.1e-46 189.9 165 55.2
BraA01t04065Z Brassica rapa HOM05D006765 ORTHO05D008554 3.5e-45 186.4 377 33.2
A01p40290 Brassica napus HOM05D006765 ORTHO05D008554 4.5e-45 186.0 377 33.4
PSO541G0333 Papaver somniferum HOM05D006765 ORTHO05D008554 7.7e-45 185.3 195 50.3
Prupe.6G082900 Prunus persica HOM05D006765 ORTHO05D008554 7.7e-45 185.3 172 57.6
AL3G25050 Arabidopsis lyrata HOM05D006765 ORTHO05D008554 1.3e-44 184.5 369 33.9
Sp3g11440 Schrenkiella parvula HOM05D006765 ORTHO05D008554 1.7e-44 184.1 364 35.4
PSO675G8178 Papaver somniferum HOM05D006765 ORTHO05D008554 2.9e-44 183.3 195 49.7
arahy.Tifrunner.gnm1.ann1.C7HE0M Arachis hypogaea HOM05D006765 ORTHO05D008554 3.8e-44 183.0 210 49.0
DCAR_013261 Daucus carota HOM05D006765 ORTHO05D008554 3.8e-44 183.0 343 37.0
AT3G13226 Arabidopsis thaliana HOM05D006765 ORTHO05D008554 8.6e-44 181.8 375 31.2
ATR0751G181 Amborella trichopoda HOM05D006765 ORTHO05D008554 5.5e-43 179.1 208 47.6
BolC1t05128H Brassica oleracea HOM05D006765 ORTHO05D008554 5.5e-43 179.1 356 35.4
C01p51810 Brassica napus HOM05D006765 ORTHO05D008554 1.2e-42 177.9 219 43.8
Thhalv10020892m.g Eutrema salsugineum HOM05D006765 ORTHO05D008554 1.6e-42 177.6 232 41.8
BcaC09g48297 Brassica carinata HOM05D006765 ORTHO05D008554 2.8e-42 176.8 236 42.8
VMungo0647G1474 Vigna mungo HOM05D006765 ORTHO05D008554 3.6e-42 176.4 395 37.0
Zm00001eb433160 Zea mays HOM05D006765 ORTHO05D008554 4.7e-42 176.0 166 50.6
Os04g0667900 Oryza sativa ssp. japonica HOM05D006765 ORTHO05D008554 5.2e-41 172.6 188 47.3
arahy.Tifrunner.gnm1.ann1.8KGR77 Arachis hypogaea HOM05D006765 ORTHO05D008554 2.4e-38 163.7 240 42.5
MD03G1037000 Malus domestica HOM05D006765 ORTHO05D008554 1.0e-36 158.3 119 65.5
Prupe.6G029900 Prunus persica HOM05D006765 ORTHO05D008554 6.6e-36 155.6 163 54.0
vmacro09619 Vaccinium macrocarpon HOM05D006765 ORTHO05D008554 1.1e-35 154.8 252 40.1
Thecc.07G007200 Theobroma cacao HOM05D006765 ORTHO05D008554 3.7e-31 139.8 234 42.7
CDE04G0216 Ceratophyllum demersum HOM05D006765 ORTHO05D008554 9.2e-30 135.2 139 47.5
Pp3c19_18350 Physcomitrium patens HOM05D006765 ORTHO05D008554 9.2e-30 135.2 264 35.2
SEGI_27535 Sequoiadendron giganteum HOM05D006765 ORTHO05D008554 4.4e-24 116.3 124 41.9
Mapoly0047s0103 Marchantia polymorpha HOM05D006765 ORTHO05D008554 1.2e-21 108.2 166 31.9
SMO115G0196 Selaginella moellendorffii HOM05D006765 ORTHO05D008554 3.9e-20 103.2 203 30.5
Psat2g006040 Pisum sativum HOM05D006765 ORTHO05D008554 6.2e-18 95.9 96 49.0
Hma1.2p1_1094F.1_g256330 Hydrangea macrophylla HOM05D006765 ORTHO05D008554 2.9e-15 87.0 206 33.5
Zm00001eb350950 Zea mays HOM05D004726 ORTHO05D005986 8.6e-12 75.5 59 52.5
MCO16G170 Micromonas commoda HOM05D006765 ORTHO05D008554 3.1e-09 67.0 182 27.5
MSTRG.15811 Avicennia marina HOM05D006765 ORTHO05D008554 1.4e-06 58.2 185 31.9
Manes.05G203050 Manihot esculenta HOM05D006765 ORTHO05D008554 3.2e-06 57.0 66 45.5


User provided reference genes

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