Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 1.6e-264 915.6 480 100.0
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 4.8e-213 744.6 440 90.7
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 9.4e-201 703.7 443 85.8
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 2.0e-195 686.0 477 81.1
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 4.1e-180 635.2 444 77.3
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 4.1e-180 635.2 444 76.8
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 2.7e-179 632.5 448 77.5
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 7.8e-179 630.9 446 77.1
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 9.5e-177 624.0 437 76.9
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 6.1e-176 621.3 438 77.4
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 5.2e-175 618.2 446 76.0
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 8.3e-173 610.9 446 74.2
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 5.4e-172 608.2 438 75.8
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 1.7e-170 603.2 444 75.2
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 1.7e-170 603.2 444 74.3
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 8.6e-170 600.9 437 75.3
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 2.8e-168 595.9 443 73.8
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 1.1e-167 594.0 444 73.0
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 1.4e-167 593.6 446 73.1
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 1.4e-167 593.6 437 75.7
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 3.1e-167 592.4 444 73.0
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.5e-166 590.1 444 72.7
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 4.4e-166 588.6 442 74.2
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 1.7e-165 586.6 442 74.0
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 3.7e-165 585.5 442 72.6
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 4.9e-165 585.1 437 73.9
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 6.4e-165 584.7 444 73.4
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 1.1e-164 583.9 436 74.1
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 1.1e-164 583.9 436 74.1
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 1.4e-164 583.6 436 73.9
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 1.4e-164 583.6 436 73.9
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 1.4e-164 583.6 436 73.9
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 2.4e-164 582.8 443 73.1
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 4.1e-164 582.0 445 72.6
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 4.1e-164 582.0 436 73.6
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 5.4e-164 581.6 436 73.9
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 1.2e-163 580.5 443 72.7
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 1.6e-163 580.1 436 73.4
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.6e-163 580.1 444 71.8
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 2.1e-163 579.7 436 73.2
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 3.5e-163 578.9 460 70.4
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 6.0e-163 578.2 445 72.1
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 1.0e-162 577.4 436 73.2
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 1.0e-162 577.4 441 72.8
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 2.3e-162 576.2 436 72.9
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 3.0e-162 575.9 432 72.2
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 5.1e-162 575.1 445 71.2
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 6.6e-162 574.7 435 71.0
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 1.1e-161 573.9 473 68.7
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 1.5e-161 573.5 435 71.7
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 3.3e-161 572.4 436 73.2
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 3.3e-161 572.4 454 70.7
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 9.5e-161 570.9 445 71.2
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 1.6e-160 570.1 445 70.8
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 2.8e-160 569.3 436 72.2
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 3.6e-160 568.9 436 71.6
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 1.1e-159 567.4 445 70.3
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 1.4e-159 567.0 436 70.0
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 3.1e-159 565.8 440 71.6
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 4.0e-159 565.5 431 71.7
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 8.9e-159 564.3 443 70.0
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 1.2e-158 563.9 434 72.4
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 2.0e-158 563.1 437 71.6
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 3.4e-158 562.4 440 69.8
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 4.4e-158 562.0 442 70.1
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 5.8e-158 561.6 445 70.1
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 7.6e-158 561.2 436 69.3
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 1.3e-157 560.5 446 71.1
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 1.7e-157 560.1 432 70.1
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.1e-156 557.4 444 69.1
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 1.2e-155 553.9 462 67.3
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 2.7e-155 552.7 432 69.9
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 3.5e-155 552.4 434 71.4
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 4.6e-155 552.0 434 69.1
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 6.0e-155 551.6 440 68.4
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 2.3e-154 549.7 448 68.8
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 3.0e-154 549.3 431 68.9
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 3.9e-154 548.9 465 68.0
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 1.1e-153 547.4 449 68.8
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 9.6e-153 544.3 438 68.3
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 8.1e-152 541.2 433 68.8
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 1.4e-151 540.4 443 67.0
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 1.8e-151 540.0 431 68.4
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 8.9e-151 537.7 469 65.9
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 1.2e-150 537.3 438 70.1
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 1.5e-150 537.0 442 70.4
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 7.6e-150 534.6 444 68.0
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 9.9e-150 534.3 463 66.1
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 1.3e-149 533.9 442 65.8
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 6.4e-149 531.6 431 68.4
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 1.1e-148 530.8 438 70.1
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 3.2e-148 529.3 432 67.4
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 5.4e-148 528.5 447 67.6
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 1.6e-147 526.9 395 71.6
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 1.0e-146 524.2 434 68.9
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 2.5e-145 519.6 466 64.2
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 5.6e-145 518.5 414 71.0
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 2.1e-144 516.5 444 65.3
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 2.8e-144 516.2 413 68.8
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 3.6e-144 515.8 526 57.6
Gohir.D05G370300 Gossypium hirsutum HOM05D005555 ORTHO05D006923 1.3e-141 507.3 364 76.6
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 4.2e-140 502.3 430 64.0
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 9.3e-140 501.1 430 66.5
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 2.3e-138 496.5 439 62.6
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 2.5e-137 493.0 442 66.3
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 1.4e-135 487.3 400 67.5
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 2.4e-135 486.5 531 56.9
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 2.0e-134 483.4 397 70.8
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 5.4e-132 475.3 508 58.9
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 2.7e-131 473.0 442 60.6
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 2.3e-130 469.9 397 69.5
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 3.0e-130 469.5 404 70.0
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 4.3e-129 465.7 437 62.0
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 2.1e-128 463.4 438 62.1
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 6.9e-127 458.4 439 59.7
TPR.G5778 Trifolium pratense HOM05D005555 ORTHO05D006923 6.7e-122 441.8 357 68.9
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 1.1e-119 434.5 378 64.3
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 2.0e-118 430.3 421 59.6
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 8.4e-117 424.9 420 58.3
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 1.3e-114 417.5 333 70.0
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 5.7e-113 412.1 421 55.3
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 6.5e-109 398.7 432 55.8
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 1.4e-108 397.5 432 55.8
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 2.7e-107 393.3 456 51.1
FAN25G0297 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.9e-101 373.2 353 60.1
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 1.9e-100 370.5 423 51.5
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 7.2e-100 368.6 433 52.0
Medtr5g049150 Medicago truncatula HOM05D005555 ORTHO05D006923 7.5e-73 278.9 216 69.9
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 3.5e-54 216.9 387 36.4
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 1.7e-48 198.0 433 32.3
Os02g0119100 Oryza sativa ssp. japonica HOM05D005555 ORTHO05D006923 3.9e-37 160.2 208 50.5
TPR.G5733 Trifolium pratense HOM05D005555 ORTHO05D006923 3.0e-21 107.5 63 81.0
Hma1.2p1_0206F.1_g087650 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 7.6e-17 92.8 46 93.5
Hma1.2p1_0545F.1_g176020 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 7.6e-17 92.8 46 93.5
Actinidia13832 Actinidia chinensis HOM05D005555 ORTHO05D006923 2.7e-06 57.8 53 64.2
arahy.Tifrunner.gnm1.ann1.C7XXCR Arachis hypogaea HOM05D005555 ORTHO05D082991 6.0e-06 56.6 150 34.7


User provided reference genes

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