Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C013040.2 Cucumis melo HOM05D004845 ORTHO05D005957 0.0e+00 2253.8 1229 100.0
CsaV3_3G044010 Cucumis sativus L. HOM05D004845 ORTHO05D005957 0.0e+00 2143.6 1229 96.0
ClCG07G013620 Citrullus lanatus HOM05D004845 ORTHO05D005957 0.0e+00 1961.0 1232 89.1
Sed0014548 Sechium edule HOM05D004845 ORTHO05D005957 0.0e+00 1768.4 1237 82.3
Sed0023831 Sechium edule HOM05D004845 ORTHO05D005957 0.0e+00 1641.7 1237 77.8
QL05p015844 Quercus lobata HOM05D004845 ORTHO05D005957 1.2e-303 1047.0 1284 58.0
CiPaw.02G142000 Carya illinoinensis HOM05D004845 ORTHO05D005957 7.3e-282 974.5 1256 55.4
Cfa003605 Carpinus fangiana HOM05D004845 ORTHO05D005957 4.9e-278 961.8 1183 56.5
Dinv30397 Davidia involucrata HOM05D004845 ORTHO05D005957 2.3e-267 926.4 1257 52.6
RcHm_v2.0_Chr2g0142521 Rosa chinensis HOM05D004845 ORTHO05D005957 1.5e-266 923.7 1263 52.7
FvH4_6g32970 Fragaria vesca HOM05D004845 ORTHO05D005957 8.4e-262 907.9 1260 51.9
Dinv37932 Davidia involucrata HOM05D004845 ORTHO05D005957 5.5e-261 905.2 1262 52.5
FAN14G1946 Fragaria x ananassa HOM05D004845 ORTHO05D005957 4.6e-260 902.1 1259 51.8
Atru.chr1.3636 Acer truncatum HOM05D004845 ORTHO05D005957 2.6e-255 886.3 1211 51.4
FAN09G4600 Fragaria x ananassa HOM05D004845 ORTHO05D005957 4.5e-255 885.6 1263 51.1
FAN02G0586 Fragaria x ananassa HOM05D004845 ORTHO05D005957 7.6e-255 884.8 1260 50.7
Glyma.08G196100 Glycine max HOM05D004845 ORTHO05D005957 1.3e-254 884.0 1263 51.1
Glyma.07G012400 Glycine max HOM05D004845 ORTHO05D005957 1.3e-251 874.0 1262 50.7
Potri.003G033100 Populus trichocarpa HOM05D004845 ORTHO05D005957 6.7e-251 871.7 1252 50.3
Prupe.3G052500 Prunus persica HOM05D004845 ORTHO05D005957 6.7e-251 871.7 1258 50.1
arahy.Tifrunner.gnm1.ann1.JSQ5P9 Arachis hypogaea HOM05D004845 ORTHO05D005957 1.9e-250 870.2 1259 50.4
Thecc.06G108000 Theobroma cacao HOM05D004845 ORTHO05D005957 5.7e-250 868.6 1276 50.2
Duzib160G0801 Durio zibethinus HOM05D004845 ORTHO05D005957 3.1e-248 862.8 1259 49.6
Manes.04G137600 Manihot esculenta HOM05D004845 ORTHO05D005957 6.5e-246 855.1 1201 51.1
CANSAT56G3316 Cannabis sativa HOM05D004845 ORTHO05D005957 7.2e-245 851.7 1253 50.7
arahy.Tifrunner.gnm1.ann1.7F0ZFP Arachis hypogaea HOM05D004845 ORTHO05D005957 6.7e-243 845.1 1261 49.5
MD09G1196000 Malus domestica HOM05D004845 ORTHO05D005957 1.1e-242 844.3 1254 50.0
vmacro18819 Vaccinium macrocarpon HOM05D004845 ORTHO05D005957 1.7e-241 840.5 1261 50.6
Sabra03G0019000 Salix brachista HOM05D004845 ORTHO05D005957 1.3e-238 830.9 1242 49.6
Ciclev10024729m.g Citrus clementina HOM05D004845 ORTHO05D005957 1.1e-237 827.8 1234 50.1
Ca_23299_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 6.3e-233 812.0 1257 48.2
Medtr8g015620 Medicago truncatula HOM05D004845 ORTHO05D005957 5.3e-232 808.9 1252 47.7
Lj3g0006882 Lotus japonicus HOM05D004845 ORTHO05D005957 8.5e-230 801.6 1267 47.0
Gohir.A05G133700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 1.9e-229 800.4 1265 48.2
TAR629G3185 Trochodendron aralioides HOM05D004845 ORTHO05D005957 4.2e-229 799.3 1281 48.5
FAN05G2503 Fragaria x ananassa HOM05D004845 ORTHO05D005957 5.5e-229 798.9 1407 45.1
Rhsim08G0231600 Rhododendron simsii HOM05D004845 ORTHO05D005957 8.8e-227 791.6 1233 49.1
TWI31G1049 Tripterygium wilfordii HOM05D004845 ORTHO05D005957 7.0e-224 781.9 1307 47.2
Gorai.009G139700 Gossypium raimondii HOM05D004845 ORTHO05D005957 1.2e-223 781.2 1263 47.9
GSVIVG01016889001 Vitis vinifera HOM05D004845 ORTHO05D005957 3.5e-223 779.6 1247 45.5
VMungo0331G0639 Vigna mungo HOM05D004845 ORTHO05D005957 1.3e-222 777.7 1255 47.5
Duzib235G0635 Durio zibethinus HOM05D004845 ORTHO05D005957 2.2e-222 776.9 1252 48.0
Gohir.D05G135700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 2.9e-222 776.5 1267 47.5
MD17G1176700 Malus domestica HOM05D004845 ORTHO05D005957 3.8e-222 776.2 1255 48.2
Lj3g0020048 Lotus japonicus HOM05D004845 ORTHO05D005957 5.7e-218 762.3 1250 46.4
Phvul.010G141800 Phaseolus vulgaris HOM05D004845 ORTHO05D005957 4.1e-216 756.1 1257 46.6
Manes.11G028800 Manihot esculenta HOM05D004845 ORTHO05D005957 7.0e-216 755.4 1280 47.3
Nn1g08771 Nelumbo nucifera HOM05D004845 ORTHO05D005957 1.7e-214 750.7 1242 48.3
Cpa.g.sc131.35 Carica papaya HOM05D004845 ORTHO05D005957 1.9e-213 747.3 1165 49.4
Lalb_Chr04g0263091 Lupinus albus HOM05D004845 ORTHO05D005957 1.7e-209 734.2 1256 45.9
MSTRG.22604 Avicennia marina HOM05D004845 ORTHO05D005957 5.0e-206 722.6 1271 45.1
Cc04_g02180 Coffea canephora HOM05D004845 ORTHO05D005957 6.6e-206 722.2 1274 45.9
DCAR_026375 Daucus carota HOM05D004845 ORTHO05D005957 1.3e-201 708.0 1186 45.5
COL.COLO4_30609 Corchorus olitorius HOM05D004845 ORTHO05D005957 5.0e-190 669.5 1262 39.5
THA.LOC104817934 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 4.7e-188 662.9 1306 41.0
Migut.I01002 Erythranthe guttata HOM05D004845 ORTHO05D005957 3.1e-187 660.2 1259 44.2
Actinidia32134 Actinidia chinensis HOM05D004845 ORTHO05D005957 1.1e-184 651.7 1078 46.9
Sc12g0009860 Simmondsia chinensis HOM05D004845 ORTHO05D005957 5.6e-181 639.4 1260 44.2
Peaxi162Scf00038g01322 Petunia axillaris HOM05D004845 ORTHO05D005957 2.3e-179 634.0 1287 42.7
PGR102G0505 Punica granatum HOM05D004845 ORTHO05D005957 2.3e-179 634.0 1257 44.3
Hund07666 Selenicereus undatus HOM05D004845 ORTHO05D005957 1.7e-177 627.9 1212 44.6
Sopen03g040190 Solanum pennellii HOM05D004845 ORTHO05D005957 2.1e-175 620.9 1271 43.6
Solyc03g121380.3 Solanum lycopersicum HOM05D004845 ORTHO05D005957 4.3e-173 613.2 1278 43.2
Psat4g193760 Pisum sativum HOM05D004845 ORTHO05D005957 1.0e-166 592.0 1048 44.9
THA.LOC104810560 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 3.9e-166 590.1 1313 39.0
Oeu052809.1 Olea europaea HOM05D004845 ORTHO05D005957 1.3e-161 575.1 1106 42.3
Aqoxy7G00060 Aquilegia oxysepala HOM05D004845 ORTHO05D005957 2.9e-161 573.9 1244 42.0
CAN.G1668.10 Capsicum annuum HOM05D004845 ORTHO05D005957 3.2e-160 570.5 1181 43.1
EL10Ac9g21102 Beta vulgaris HOM05D004845 ORTHO05D005957 1.1e-157 562.0 1191 43.6
HanXRQChr09g0276331 Helianthus annuus HOM05D004845 ORTHO05D005957 1.1e-157 562.0 1259 41.2
PSO170G6909 Papaver somniferum HOM05D004845 ORTHO05D005957 2.5e-157 560.8 1274 42.4
Thhalv10019924m.g Eutrema salsugineum HOM05D004845 ORTHO05D005957 4.2e-152 543.5 1216 39.6
ECA232G1750 Erigeron canadensis HOM05D004845 ORTHO05D005957 9.3e-152 542.3 1246 40.4
TPR.G8763 Trifolium pratense HOM05D004845 ORTHO05D005957 6.7e-150 536.2 1229 40.0
AL3G35330 Arabidopsis lyrata HOM05D004845 ORTHO05D005957 5.6e-149 533.1 1295 39.1
Carub.0003s2130 Capsella rubella HOM05D004845 ORTHO05D005957 9.0e-147 525.8 1247 38.7
Sp3g19330 Schrenkiella parvula HOM05D004845 ORTHO05D005957 1.2e-143 515.4 1253 39.0
DCAR_007608 Daucus carota HOM05D004845 ORTHO05D005957 1.6e-143 515.0 1219 39.7
Lsat_1_v5_gn_4_95940 Lactuca sativa HOM05D004845 ORTHO05D005957 5.1e-142 510.0 1235 41.0
Oeu026736.3 Olea europaea HOM05D004845 ORTHO05D005957 6.7e-142 509.6 1224 37.4
Eucgr.J02886 Eucalyptus grandis HOM05D004845 ORTHO05D005957 6.2e-140 503.1 1034 44.3
AT3G21290 Arabidopsis thaliana HOM05D004845 ORTHO05D005957 5.5e-136 490.0 1295 38.3
ATR0730G184 Amborella trichopoda HOM05D004845 ORTHO05D005957 1.0e-134 485.7 1277 38.8
AUR62038325 Chenopodium quinoa HOM05D004845 ORTHO05D005957 2.5e-133 481.1 1207 36.7
SGA_v2.0_scaffold71G23747 Striga asiatica HOM05D004845 ORTHO05D005957 7.4e-133 479.6 1253 36.5
Aa31LG8G7990 Aethionema arabicum HOM05D004845 ORTHO05D005957 9.7e-133 479.2 1230 39.3
CSS0001379 Camellia sinensis var. sinensis HOM05D004845 ORTHO05D005957 1.3e-132 478.8 855 48.2
AUR62023919 Chenopodium quinoa HOM05D004845 ORTHO05D005957 1.1e-131 475.7 1226 35.8
BcaB06g26218 Brassica carinata HOM05D004845 ORTHO05D005957 1.2e-130 472.2 1269 37.0
C05p42240 Brassica napus HOM05D004845 ORTHO05D005957 7.2e-128 463.0 1265 36.4
Haze_15920 Corylus avellana HOM05D004845 ORTHO05D005957 6.1e-127 459.9 585 51.5
BcaC05g28184 Brassica carinata HOM05D004845 ORTHO05D005957 5.1e-126 456.8 1265 36.2
BolC5t32952H Brassica oleracea HOM05D004845 ORTHO05D005957 5.1e-126 456.8 1265 36.2
BraA05t21625Z Brassica rapa HOM05D004845 ORTHO05D005957 2.4e-123 448.0 1264 35.8
A05p27330 Brassica napus HOM05D004845 ORTHO05D005957 1.5e-122 445.3 1265 35.7
HanXRQChr05g0140141 Helianthus annuus HOM05D004845 ORTHO05D005957 5.5e-120 436.8 1233 36.3
Lj5C49T6 Lonicera japonica HOM05D004845 ORTHO05D005957 8.8e-118 429.5 1037 36.9
CDE10G0270 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 1.3e-116 425.6 1267 37.5
Ah.01g016900 Amaranthus hybridus HOM05D004845 ORTHO05D005957 4.1e-115 420.6 1148 39.0
Nitab4.5_0004848g0010 Nicotiana tabacum HOM05D004845 ORTHO05D005957 9.1e-107 392.9 1243 35.6
Zm00001eb006560 Zea mays HOM05D004845 ORTHO05D005957 1.7e-100 372.1 1291 33.8
Actinidia21742 Actinidia chinensis HOM05D004845 ORTHO05D005957 5.9e-98 363.6 910 34.9
SGA_v2.0_scaffold45G16992 Striga asiatica HOM05D004845 ORTHO05D005957 1.3e-97 362.5 425 51.8
Zm00001eb401540 Zea mays HOM05D004845 ORTHO05D005957 5.0e-97 360.5 1285 34.9
Medtr8g015610 Medicago truncatula HOM05D004845 ORTHO05D005957 9.4e-96 356.3 1064 31.9
CARHR097190 Cardamine hirsuta HOM05D004845 ORTHO05D005957 4.0e-86 324.3 1056 36.6
MBI01_g37799_MAGBIO Magnolia biondii HOM05D004845 ORTHO05D005957 3.4e-85 321.2 753 36.8
CDE10G0876 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 1.1e-83 316.2 437 49.2
Lalb_Chr15g0087461 Lupinus albus HOM05D004845 ORTHO05D005957 3.5e-82 311.2 1124 31.6
unitig_749.g14048 Utricularia gibba HOM05D004845 ORTHO05D005957 1.9e-80 305.4 1138 33.9
SEGI_05846 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 5.4e-75 287.3 1343 30.4
Actinidia21743 Actinidia chinensis HOM05D004845 ORTHO05D005957 8.1e-71 273.5 327 52.0
BcaC09g49066 Brassica carinata HOM05D004845 ORTHO05D005957 1.8e-70 272.3 1253 30.8
Atru.chr1.3631 Acer truncatum HOM05D001194 ORTHO05D005909 1.5e-64 252.7 312 50.6
SEGI_07021 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 1.2e-63 249.6 1313 29.8
Duzib192G0218 Durio zibethinus HOM05D004845 ORTHO05D005957 7.6e-61 240.4 274 52.9
Lalb_Chr14g0372881 Lupinus albus HOM05D004845 ORTHO05D005957 1.9e-59 235.7 1053 31.4
HPP92_028291 Vanilla planifolia HOM05D004845 ORTHO05D005957 1.5e-53 216.1 218 59.6
Lalb_Chr14g0372871 Lupinus albus HOM05D004845 ORTHO05D005957 4.9e-44 184.5 198 54.5
CDE10G0326 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 1.1e-43 183.3 702 29.2
Mapoly0021s0057 Marchantia polymorpha HOM05D004845 ORTHO05D005957 3.3e-40 171.8 503 34.2
Haze_15921 Corylus avellana HOM05D004845 ORTHO05D005957 2.1e-39 169.1 216 50.9
Pp3c12_1570 Physcomitrium patens HOM05D004845 ORTHO05D005957 6.2e-39 167.5 499 32.1
Os03g0187100 Oryza sativa ssp. japonica HOM05D004845 ORTHO05D005957 5.3e-38 164.5 360 38.6
C01p42960 Brassica napus HOM05D004845 ORTHO05D005957 1.2e-34 153.3 139 61.9
BolC1t04240H Brassica oleracea HOM05D004845 ORTHO05D005957 6.7e-33 147.5 155 56.8
SMO334G0114 Selaginella moellendorffii HOM05D004845 ORTHO05D005957 8.1e-31 140.6 383 31.3
Ca_23296_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 6.5e-28 131.0 240 41.7
unitig_749.g14049 Utricularia gibba HOM05D004845 ORTHO05D005957 1.2e-26 126.7 105 55.2
Ca_23298_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 8.7e-25 120.6 176 42.6
HPP92_028293 Vanilla planifolia HOM05D004845 ORTHO05D005957 9.6e-24 117.1 142 43.7
Actinidia32135 Actinidia chinensis HOM05D004845 ORTHO05D005957 6.9e-22 110.9 135 57.8
AagrBONN_evm.TU.Sc2ySwM_344.5033 Anthoceros agrestis HOM05D004845 ORTHO05D005957 6.9e-22 110.9 1370 25.1
Cpa.g.sc131.32 Carica papaya HOM05D004845 ORTHO05D005957 1.2e-21 110.2 131 55.0
SHI11164 Sapria himalayana HOM05D004845 ORTHO05D003034 4.2e-19 101.7 69 63.8
C01p42950 Brassica napus HOM05D004845 ORTHO05D005957 1.6e-18 99.8 162 39.5
CBR_g20996 Chara braunii HOM05D004845 ORTHO05D005957 2.3e-17 95.9 193 35.8
PGSC0003DMG400002508 Solanum tuberosum HOM05D004845 ORTHO05D005957 2.3e-17 95.9 129 53.5
SHI11167 Sapria himalayana HOM05D004845 ORTHO05D005957 5.7e-16 91.3 218 31.7
HPP92_028292 Vanilla planifolia HOM05D004845 ORTHO05D005957 5.7e-16 91.3 651 33.8
Medtr1g021875 Medicago truncatula HOM05D004845 ORTHO05D005957 5.3e-14 84.7 152 41.4
CBR_g20995 Chara braunii HOM05D004845 ORTHO05D005957 1.1e-11 77.0 212 31.1
Zm00001eb424050 Zea mays HOM05D002942 ORTHO05D003270 7.9e-10 70.9 169 35.5
SHI11163 Sapria himalayana HOM05D004845 ORTHO05D005957 2.3e-09 69.3 100 41.0
SHI11166 Sapria himalayana HOM05D004845 ORTHO05D005957 3.9e-09 68.6 47 72.3


User provided reference genes

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