Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C013011.2 Cucumis melo HOM05D001329 ORTHO05D004946 0.0e+00 1226.5 625 100.0
CsaV3_3G023430 Cucumis sativus L. HOM05D001329 ORTHO05D004946 0.0e+00 1082.0 624 89.4
ClCG07G013420 Citrullus lanatus HOM05D001329 ORTHO05D004946 1.5e-286 989.2 642 81.3
ClCG07G013460 Citrullus lanatus HOM05D001329 ORTHO05D004946 4.3e-286 987.6 642 81.2
Sed0006591 Sechium edule HOM05D001329 ORTHO05D004946 9.0e-252 873.6 646 73.7
GSVIVG01016954001 Vitis vinifera HOM05D001329 ORTHO05D004946 1.8e-188 663.3 636 59.6
Thecc.06G102200 Theobroma cacao HOM05D001329 ORTHO05D004946 1.9e-185 653.3 656 57.3
Ciclev10025165m.g Citrus clementina HOM05D001329 ORTHO05D004946 4.2e-185 652.1 630 59.0
TWI18G0587 Tripterygium wilfordii HOM05D001329 ORTHO05D004946 1.6e-184 650.2 493 69.4
Potri.001G191200 Populus trichocarpa HOM05D001329 ORTHO05D004946 4.7e-184 648.7 665 57.1
Duzib235G0146 Durio zibethinus HOM05D001329 ORTHO05D004946 2.0e-182 643.3 652 56.1
Eucgr.J02926 Eucalyptus grandis HOM05D001329 ORTHO05D004946 5.7e-182 641.7 487 68.4
Manes.11G031600 Manihot esculenta HOM05D001329 ORTHO05D004946 1.3e-181 640.6 712 53.7
QL05p019057 Quercus lobata HOM05D001329 ORTHO05D004946 2.8e-181 639.4 493 68.0
CANSAT56G2668 Cannabis sativa HOM05D001329 ORTHO05D004946 4.8e-181 638.6 642 56.7
Eucgr.J02692 Eucalyptus grandis HOM05D001329 ORTHO05D004946 1.4e-180 637.1 637 57.8
TAR626G1659 Trochodendron aralioides HOM05D001329 ORTHO05D004946 2.4e-180 636.3 682 54.8
Gorai.011G070300 Gossypium raimondii HOM05D001329 ORTHO05D004946 1.6e-179 633.6 655 54.5
TAR626G1508 Trochodendron aralioides HOM05D001329 ORTHO05D004946 2.3e-178 629.8 689 54.3
THA.LOC104803142 Tarenaya hassleriana HOM05D001329 ORTHO05D004946 2.9e-178 629.4 640 55.3
Aa31LG3G5830 Aethionema arabicum HOM05D001329 ORTHO05D004946 3.3e-177 625.9 565 59.8
PGR102G1644 Punica granatum HOM05D001329 ORTHO05D004946 4.2e-177 625.5 665 54.7
PGSC0003DMG400002521 Solanum tuberosum HOM05D001329 ORTHO05D004946 2.1e-176 623.2 489 65.4
Peaxi162Scf00038g01146 Petunia axillaris HOM05D001329 ORTHO05D004946 6.1e-176 621.7 532 62.0
VMungo0331G1514 Vigna mungo HOM05D001329 ORTHO05D004946 1.0e-175 620.9 482 66.6
Lalb_Chr04g0263001 Lupinus albus HOM05D001329 ORTHO05D004946 1.4e-175 620.5 485 65.4
Sopen03g039950 Solanum pennellii HOM05D001329 ORTHO05D004946 1.8e-175 620.2 518 62.2
Lsat_1_v5_gn_4_98041 Lactuca sativa HOM05D001329 ORTHO05D004946 2.3e-175 619.8 476 67.2
arahy.Tifrunner.gnm1.ann1.KL0FMA Arachis hypogaea HOM05D001329 ORTHO05D002618 3.0e-175 619.4 483 67.1
MD17G1180500 Malus domestica HOM05D001329 ORTHO05D004946 3.0e-175 619.4 490 67.3
Phvul.010G143800 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 3.0e-175 619.4 513 64.7
Nitab4.5_0004969g0080 Nicotiana tabacum HOM05D001329 ORTHO05D004946 4.0e-175 619.0 636 55.2
Cc04_g02430 Coffea canephora HOM05D001329 ORTHO05D004946 1.2e-174 617.5 635 55.4
TPR.G15143 Trifolium pratense HOM05D001329 ORTHO05D004946 1.5e-174 617.1 525 63.0
Nitab4.5_0005085g0040 Nicotiana tabacum HOM05D001329 ORTHO05D004946 2.0e-174 616.7 479 66.4
HanXRQChr05g0139791 Helianthus annuus HOM05D001329 ORTHO05D004946 7.5e-174 614.8 539 61.0
Solyc03g121120.4 Solanum lycopersicum HOM05D001329 ORTHO05D004946 7.5e-174 614.8 631 55.2
Sc12g0010100 Simmondsia chinensis HOM05D001329 ORTHO05D004946 1.3e-173 614.0 568 57.7
Medtr8g014670 Medicago truncatula HOM05D001329 ORTHO05D004946 2.2e-173 613.2 519 62.0
MBI02_g35318_MAGBIO Magnolia biondii HOM05D001329 ORTHO05D004946 2.8e-173 612.8 549 60.5
CAN.G1143.24 Capsicum annuum HOM05D001329 ORTHO05D004946 4.9e-173 612.1 473 66.0
Glyma.08G199700 Glycine max HOM05D001329 ORTHO05D004946 4.9e-173 612.1 550 61.8
Aqoxy7G03959 Aquilegia oxysepala HOM05D001329 ORTHO05D004946 6.3e-173 611.7 685 52.6
Psat4g196800 Pisum sativum HOM05D001329 ORTHO05D004946 6.3e-173 611.7 526 62.0
AT5G50340 Arabidopsis thaliana HOM05D001329 ORTHO05D004946 1.4e-172 610.5 561 58.8
Nn8g39015 Nelumbo nucifera HOM05D001329 ORTHO05D004946 3.1e-172 609.4 578 58.7
AL8G24420 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 7.0e-172 608.2 518 61.6
Carub.0008s1040 Capsella rubella HOM05D001329 ORTHO05D004946 9.2e-172 607.8 491 64.0
RcHm_v2.0_Chr2g0141101 Rosa chinensis HOM05D001329 ORTHO05D004946 2.7e-171 606.3 641 56.8
FvH4_6g32620 Fragaria vesca HOM05D001329 ORTHO05D004946 4.5e-171 605.5 631 55.8
Rhsim08G0228700 Rhododendron simsii HOM05D001329 ORTHO05D004946 2.3e-170 603.2 743 50.5
Ah.01g017270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 2.9e-170 602.8 486 64.6
PSO782G0993 Papaver somniferum HOM05D001329 ORTHO05D004946 2.9e-170 602.8 483 64.8
CiPaw.01G230000 Carya illinoinensis HOM05D001329 ORTHO05D004946 1.1e-169 600.9 476 66.6
Gohir.A10G064700 Gossypium hirsutum HOM05D001329 ORTHO05D004946 1.9e-169 600.1 655 52.2
BcaC01g04813 Brassica carinata HOM05D001329 ORTHO05D004946 3.3e-169 599.4 549 58.8
Thhalv10013055m.g Eutrema salsugineum HOM05D001329 ORTHO05D004946 3.3e-169 599.4 557 57.5
PSO478G0947 Papaver somniferum HOM05D001329 ORTHO05D004946 3.3e-169 599.4 508 61.8
A03p27790 Brassica napus HOM05D001329 ORTHO05D004946 7.3e-169 598.2 553 58.0
Sp6g12440 Schrenkiella parvula HOM05D001329 ORTHO05D004946 7.3e-169 598.2 640 52.8
BolC3t15673H Brassica oleracea HOM05D001329 ORTHO05D004946 2.1e-168 596.7 555 58.2
C03p33520 Brassica napus HOM05D001329 ORTHO05D004946 2.8e-168 596.3 555 58.2
BraA03t11990Z Brassica rapa HOM05D001329 ORTHO05D004946 3.6e-168 595.9 553 57.9
EL10Ac9g21183 Beta vulgaris HOM05D001329 ORTHO05D004946 1.0e-167 594.3 541 59.5
vmacro18841 Vaccinium macrocarpon HOM05D001329 ORTHO05D004946 5.2e-167 592.0 712 50.8
arahy.Tifrunner.gnm1.ann1.B6KHKZ Arachis hypogaea HOM05D001329 ORTHO05D002618 8.9e-167 591.3 460 67.4
Migut.I00963 Erythranthe guttata HOM05D001329 ORTHO05D004946 1.5e-166 590.5 642 54.2
Ca_23279_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 3.4e-166 589.3 496 63.1
Sabra01G0150400 Salix brachista HOM05D001329 ORTHO05D004946 1.7e-165 587.0 729 50.9
unitig_88.g27600 Utricularia gibba HOM05D001329 ORTHO05D004946 1.4e-164 583.9 481 62.6
Os06g0151600 Oryza sativa ssp. japonica HOM05D001329 ORTHO05D004946 1.9e-164 583.6 561 55.1
Lalb_Chr24g0396201 Lupinus albus HOM05D001329 ORTHO05D004946 5.4e-164 582.0 509 60.9
COL.COLO4_30535 Corchorus olitorius HOM05D001329 ORTHO05D004946 1.6e-163 580.5 647 52.6
ATR0705G162 Amborella trichopoda HOM05D001329 ORTHO05D004946 2.0e-163 580.1 516 58.5
AUR62031953 Chenopodium quinoa HOM05D001329 ORTHO05D004946 7.8e-163 578.2 664 49.8
BcaB01g02899 Brassica carinata HOM05D001329 ORTHO05D004946 5.6e-161 572.0 479 61.4
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 1.6e-160 570.5 530 57.7
Hund07630 Selenicereus undatus HOM05D001329 ORTHO05D004946 3.6e-160 569.3 636 52.7
Glyma.15G021000 Glycine max HOM05D001329 ORTHO05D004946 8.0e-160 568.2 554 56.0
arahy.Tifrunner.gnm1.ann1.V5Z0HR Arachis hypogaea HOM05D001329 ORTHO05D004946 2.3e-159 566.6 622 51.4
FAN05G0851 Fragaria x ananassa HOM05D001329 ORTHO05D004946 3.1e-159 566.2 632 52.8
Dinv30424 Davidia involucrata HOM05D001329 ORTHO05D004946 1.2e-158 564.3 494 63.0
Prupe.3G056500 Prunus persica HOM05D001329 ORTHO05D004946 1.3e-157 560.8 601 55.4
Phvul.005G165000 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 8.3e-157 558.1 587 53.0
Lj3g0004043 Lotus japonicus HOM05D001329 ORTHO05D004946 1.4e-156 557.4 632 51.9
VMungo1080G1498 Vigna mungo HOM05D001329 ORTHO05D004946 1.6e-155 553.9 579 53.5
TPR.G6578 Trifolium pratense HOM05D001329 ORTHO05D004946 6.0e-155 552.0 639 50.4
SalBow2G1072 Salvia bowleyana HOM05D001329 ORTHO05D004946 1.7e-154 550.4 652 50.8
Medtr2g100640 Medicago truncatula HOM05D001329 ORTHO05D004946 3.0e-154 549.7 645 50.1
GSVIVG01016953001 Vitis vinifera HOM05D001329 ORTHO05D004946 1.1e-151 541.2 546 56.6
SGA_v2.0_scaffold45G16999 Striga asiatica HOM05D001329 ORTHO05D004946 6.8e-151 538.5 554 55.8
DCAR_007591 Daucus carota HOM05D001329 ORTHO05D004946 4.1e-148 529.3 550 55.1
Lj3g0020598 Lotus japonicus HOM05D001329 ORTHO05D004946 2.7e-147 526.6 394 70.8
SGA_v2.0_scaffold265G46056 Striga asiatica HOM05D001329 ORTHO05D004946 2.5e-145 520.0 577 52.3
Ca_01173_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 1.9e-140 503.8 640 48.3
Gohir.D10G066200 Gossypium hirsutum HOM05D001329 ORTHO05D004946 7.3e-137 491.9 393 65.9
AUR62022239 Chenopodium quinoa HOM05D001329 ORTHO05D004946 2.4e-135 486.9 560 48.8
FAN14G3013 Fragaria x ananassa HOM05D001329 ORTHO05D004946 7.6e-134 481.9 519 55.1
Mapoly0008s0091 Marchantia polymorpha HOM05D001329 ORTHO05D004946 1.4e-132 477.6 543 49.5
Pp3c1_36770 Physcomitrium patens HOM05D001329 ORTHO05D004946 1.3e-130 471.1 501 50.3
Lj9C514G19 Lonicera japonica HOM05D001329 ORTHO05D004946 1.6e-128 464.2 413 63.2
SEGI_18109 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 8.4e-125 451.8 385 60.8
Psat5g295200 Pisum sativum HOM05D001329 ORTHO05D004946 2.4e-119 433.7 584 47.4
SMO146G0024 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.9e-116 424.1 485 47.8
Zm00001eb270700 Zea mays HOM05D001329 ORTHO05D004946 1.9e-116 424.1 508 48.4
Atru.chr1.3485 Acer truncatum HOM05D001329 ORTHO05D004946 9.0e-111 405.2 313 68.4
Actinidia32112 Actinidia chinensis HOM05D001329 ORTHO05D004946 2.6e-110 403.7 296 71.3
VMungo1080G0220 Vigna mungo HOM05D001329 ORTHO05D004946 2.6e-110 403.7 482 49.6
CBR_g52747 Chara braunii HOM05D001329 ORTHO05D004946 8.7e-106 388.7 564 41.8
AUR62022260 Chenopodium quinoa HOM05D001329 ORTHO05D004946 2.5e-100 370.5 405 52.8
arahy.Tifrunner.gnm1.ann1.VU8J7C Arachis hypogaea HOM05D001329 ORTHO05D004946 1.2e-94 351.7 463 44.7
AagrBONN_evm.TU.Sc2ySwM_340.358 Anthoceros agrestis HOM05D001329 ORTHO05D004946 1.5e-94 351.3 375 50.4
MCO02G474 Micromonas commoda HOM05D001329 ORTHO05D004946 1.3e-88 331.6 487 39.6
CDE02G2442 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 8.2e-88 328.9 269 62.1
CSS0007570 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 4.1e-87 326.6 387 51.7
Haze_15874 Corylus avellana HOM05D001329 ORTHO05D004946 2.1e-83 314.3 363 51.5
PRCOL_00001245 Prasinoderma coloniale HOM05D001329 ORTHO05D004946 2.7e-83 313.9 535 37.2
Haze_15870 Corylus avellana HOM05D001329 ORTHO05D004946 1.4e-82 311.6 359 51.3
CSS0047870 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 3.7e-80 303.5 370 51.1
CSS0049032 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 1.4e-79 301.6 287 59.2
Ah.16g103270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 1.8e-79 301.2 272 59.6
CARHR258160 Cardamine hirsuta HOM05D001329 ORTHO05D004946 1.2e-78 298.5 391 47.8
Psat5g239480 Pisum sativum HOM05D001329 ORTHO05D004946 3.2e-76 290.4 326 53.7
Cpa.g.sc25.37 Carica papaya HOM05D001329 ORTHO05D004946 1.6e-75 288.1 195 77.4
HPP92_003950 Vanilla planifolia HOM05D001329 ORTHO05D004946 1.3e-69 268.5 259 57.9
Actinidia21724 Actinidia chinensis HOM05D001329 ORTHO05D004946 8.3e-64 249.2 341 45.5
SHI11143 Sapria himalayana HOM05D000023 ORTHO05D000014 1.0e-58 232.3 352 40.9
CANSAT56G4024 Cannabis sativa HOM05D001329 ORTHO05D004946 1.2e-57 228.8 192 65.1
AL58U10020 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 1.3e-56 225.3 193 61.1
RcHm_v2.0_Chr2g0141091 Rosa chinensis HOM05D001329 ORTHO05D004946 6.3e-56 223.0 231 54.5
Cre07.g317908 Chlamydomonas reinhardtii HOM05D001329 ORTHO05D004946 7.0e-55 219.5 671 28.6
CDE02G0018 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 2.1e-51 208.0 180 61.7
SMO173G0075 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 4.0e-50 203.8 268 44.0
SMO173G0029 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 2.4e-47 194.5 247 45.7
SMO173G0086 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.2e-46 192.2 268 43.3
CANSAT56G3773 Cannabis sativa HOM05D001329 ORTHO05D004946 2.3e-45 188.0 154 69.5
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 8.6e-45 186.0 147 71.4
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 2.8e-43 181.0 152 65.1
CsaV3_5G013640 Cucumis sativus L. HOM05D001329 ORTHO05D004946 1.3e-37 162.2 98 78.6
SMO146G0193 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.1e-34 152.5 228 41.2
SMO173G0090 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.8e-34 151.8 225 41.3
Oeu063750.1 Olea europaea HOM05D001329 ORTHO05D004946 2.3e-34 151.4 117 66.7
Haze_15873 Corylus avellana HOM05D001329 ORTHO05D004946 3.1e-34 151.0 159 57.2
SEGI_08653 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 7.5e-33 146.4 165 49.7
Psat5g295400 Pisum sativum HOM05D001329 ORTHO05D004946 7.3e-28 129.8 138 47.8
Glyma.13G353300 Glycine max HOM05D001329 ORTHO05D004946 1.4e-26 125.6 99 59.6
Haze_15869 Corylus avellana HOM05D001329 ORTHO05D004946 5.8e-25 120.2 152 50.0
Hma1.2p1_0430F.1_g151230 Hydrangea macrophylla HOM05D001329 ORTHO05D004946 1.3e-24 119.0 247 34.8
PSO675G5297 Papaver somniferum HOM05D001329 ORTHO05D004946 4.9e-24 117.1 254 33.5
Cpa.g.sc25.35 Carica papaya HOM05D001329 ORTHO05D004946 1.1e-23 115.9 163 39.9
Gohir.A05G129875 Gossypium hirsutum HOM05D001329 ORTHO05D004946 2.4e-18 98.2 70 68.6
SHI11148 Sapria himalayana HOM05D000105 ORTHO05D000023 3.1e-18 97.8 132 43.9
arahy.Tifrunner.gnm1.ann1.3W2ZUL Arachis hypogaea HOM05D001329 ORTHO05D010271 1.7e-16 92.0 74 58.1
Cfa015409 Carpinus fangiana HOM05D007753 ORTHO05D009385 2.2e-16 91.7 72 61.1
Eucgr.G00548 Eucalyptus grandis HOM05D001329 ORTHO05D004946 4.6e-14 84.0 59 72.9
Cpa.g.sc2949.1 Carica papaya HOM05D001329 ORTHO05D004946 1.5e-12 79.0 52 78.8
PGR102G0501 Punica granatum HOM05D001329 ORTHO05D004946 3.6e-11 74.3 65 60.0
Cpa.g.c44864 Carica papaya HOM05D001329 ORTHO05D004946 8.1e-11 73.2 56 57.1
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 2.4e-10 71.6 147 33.3
BcaB01g06145 Brassica carinata HOM05D001329 ORTHO05D004946 4.0e-10 70.9 40 67.5
SMO173G0016 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 4.0e-10 70.9 70 45.7
BcaC02g08434 Brassica carinata HOM05D001329 ORTHO05D004946 6.9e-10 70.1 40 67.5
C04p54240 Brassica napus HOM05D001329 ORTHO05D004946 1.2e-09 69.3 103 41.7
arahy.Tifrunner.gnm1.ann1.R9IHKK Arachis hypogaea HOM05D001329 ORTHO05D010271 2.0e-09 68.6 52 63.5
RcHm_v2.0_Chr2g0141071 Rosa chinensis HOM05D001329 ORTHO05D004946 7.6e-09 66.6 51 62.7
arahy.Tifrunner.gnm1.ann1.H8VH8W Arachis hypogaea HOM05D008137 ORTHO05D010271 3.8e-08 64.3 51 56.9
Oeu043914.1 Olea europaea HOM05D001329 ORTHO05D004946 3.8e-08 64.3 54 53.7
SMO173G0061 Selaginella moellendorffii HOM05D001549 ORTHO05D003098 6.4e-08 63.5 71 49.3
arahy.Tifrunner.gnm1.ann1.6Z8QT9 Arachis hypogaea HOM05D001329 ORTHO05D010271 1.4e-07 62.4 52 53.8
SHI11147 Sapria himalayana HOM05D000105 ORTHO05D000023 7.9e-06 56.6 83 39.8


User provided reference genes

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